Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->LBD16                                                                     <---------LBD16                                                                     <-----------RAV1(2)                                                                     --------->HSFB2a(2)                                                          <---------AHL20(2)                                 <------ZmHOX2a(1)    <---------CCA1(1) <-------GAMYB               <---------TOE1(1)        <---------RVE1(1) ---------ANAC58       --------->WRKY45              --------->ARR11(3) ---------ANAC46       --------->WRKY38(1)           <---------ARR11(3) <------ZmHOX2a(1) ---------ANAC58       --------->WRKY12           <------ZmHOX2a(1)  <---------HSFB2a(2)    --------- ->DOF2               --------->DOF5.7(2)    <----------DOF2 <---------GLK1(1)   <---------At4g35610   tggcgttgaagagagcatggagacgttgactacgaggatgtctatgtctttaggagatatttgatttctctccaggagttttccgatgctgtccacgtag  12283900                 ========================HOX2a_HOX2a                 ------>ZmHOX2a(2)                =========================HOX2a_HOX2a                <------ZmHOX2a(2)               <---------ARR14(2)                                             <---------MYB46(3)               <---------ARR11(3)                                         <------MYB83               --------->ARR11(3)                                         <------MYB46(1)               --------->ARR14(2)                                        <---------TOE2(2)              <---------GLK1(1)                                          <---------TOE1(2)     <-----              --------->GLK1(1)                                          <---------AtMYB61     ------         --------->HSFB2a(2)                <---------HSFB2a(2)       <---------ANAC58         ------         <---------LBD16                    --------->HSFB2a(2)       <---------ANAC46      --------- >ANAC46 <---------HSFB2a(2)      <------ZmHOX2a(1)  ---------->DOF2  <---------ANAC58    -----------   aactcttccatctcggagatcccatcttgtaacgaaggacgctcttctcgaccttcaaagacaagtcttggagcgtaggtttgttctccaatccctgagc  12284000                                                                                                    <                                                                                                   <-                                                                               <---------ZAT14     <-                                                                               <---------ZAT18     <-                                                                               --------->ZAT14   <---      <---------ANAC58                                                      <---------ANAC58     <---      <---------ANAC58                                                      <---------ANAC58     ----      <---------ANAC46                                              --------->ANAC46            <---- ----At4g35610                                                   <---------ZAT14                <---- --->ZAT2 --------->HSFB2a(2)                                    --------->ZAT14             ------>ZmHOX2a(2) --->At4g35610   --------->ARR11(3)   <---------TOE2(3)    --------->ARR11(3)  --------->ZAT18------- >LBD16<----------DOF2      ----------->GT1                <---------ARR11(3)  <---------At4g35610<-- >RAV1(2) <---------HSFB2a(2)<-------GAMYB  <---------AtMYB61------>ZmHOX2a(2) --------->At4g35610<--   ttactatggctttgagaaggaacttgtattcggttaaaccaaggttttggtttcgataaatgatctctccactgaattgagtgctcaccattcgatcgtc  12284100                                                                            --------->DAG2                                                                           ---------->DOF2                                                                     ------>ZmHOX2a(2)                                                                     ============================HOX2a_HOX2a                                                                    <------ZmHOX2a(2) <---------MYB46(3)                                                 =============================HOX2a_HOX2a <------MYB83                                                      <---------ARR14(3) <------MYB46(1)                                                   --------->ARR11(3) ---------AtMYB61                                                  <---------AGP1 -------P                                                          --------->ARR14(2) --------MYB55(1)                                                  <---------ARR11(3) --------MYB52(1)                                                  --------->AGP1 ------MYB46(3)                                                    <---------ARR14(2) ------DEAR3(2)                                                    --------->ARR14(3) ----->MYB55(2)                               <----------DOF2     <---------CCA1(2) -----TOE2(2)                                <---------ANAC58   <---------HSFB2a(2) -----DEAR3(1)                           <---------ANAC58       --------->HSFB2a(2) ----->AtMYB77                           <---------ANAC58       --------------->AGL15           ----- -------MYB52(1)          <---------REM1(1)  <---------ANAC58  ----------------->AGL1     =========== -----GAMYB        <---------ZAT6 <---------ATHB12             <-----------------AGL1     <------ZmHOX2a(1)   ggttggtttatgacattggtagtctaaaatgtagcaatctttgtcttgctttgagtctatgagtttccagatcttgaaaaagaggtaagagaggagaaga  12284200                   <-------TEIL                  <------ZmHOX2a(2)                 <---------ARR14(2)                 <---------ARR11(3)                 --------->ARR11(3)        ---------->DOF2       <---------AHL20(2)  ---------->DOF2--------->ARR14(2) ------>GT1    ----------->ARR10          <----------DOF2                                        ---- ========================HOX2a_HOX2a<-----------GT1                                            ------   gagaaaaagagaaagagaagatccatagttattttttttttcttctttgttttggtattttttgtttgtttgtttgtttgttttggggtttaagaagaga  12284300                                                                                       --------->ZAT2                                                                                       <---------ZAT2                                                                                       <---------At4g35610                                                                                       --------->At4g35610                                                                                      ------>NtERF2                                                                                  --------->ANAC58                             --------->ALFIN1                                     --------->ANAC58                      *TSS <---------ANAC46     --------->AHL20(2)                --------->ANAC46                <---------AtLEC2       ---------->DOF2        --------->CCA1(2)--------->ARR14(2) >>> ----->ICU4    <-------TEIL<---------bZIP60(2)  <-----------TBP                <---------ARR14(2) <<< --->CCA1(2)--------->At4g35610   <------------CBF         --------->GLK1(2)  <------ZmHOX2a(1)<-----   tgatgaagtgagtaagatgcatggaaatgaagtggagattgtaaaggggattatataagagaatatatgagaatggatgaggaaacgccagctctgaatt  12284400                                                                      --------->WRKY12                                                                      --------->WRKY38(1)                                                                     --------->DOF5.7(2)                                                            --------->AHL20(1)                                                            --------->AHL20(2)                                                            <---------AHL20(1)      <-----------GT1     <------MYB46(1)                                     --------->YAB1<---------DOF5.7(2)     <------MYB83<---------YAB1 --------->YAB1          <---------YAB1----------->HVH21       <------    <---------MYB46(3)     --------->AHL20(2)          <---------AHL20(2)       --------->ARR11(3) >>>>>>>>>>>>>>LFY <------------CBF                    --------->AHL20(2)  --------->At5g28300<------ <<<<<<<<<<<<<<LFY--------->ATHB12  <---------YAB1    --------->YAB1<-------GAMYB--------->CCA1(2) ----GLK1(1)--------->ANAC46<---------YAB1   ---------->DOF2<---------AHL20(2)  <---------ARR11(3)   tcccagtgggttctacataaccattgagttttaatagtatttttgaagaaagggaattttaataaattttcgttgacggtaagatataacaagtttaagg  12284500                                                                        --------->TOE1(2)                                                                   --------->AHL20(2)                                                                 <---------YAB1                                                                --------->TOE2(3)      ------>ZmHOX2a(1)                                                               --------->YAB1    --------->HSFC1(2)                                                               <--------HAHB4    <---------HSFB2a(1)    <-----------GT1                                           <---------YAB1     <---------HSFC1(2)-- ---TOE2(3)           --------->ALFIN1--------->ALFIN1        <---------ATHB12   --------->HSFB2a(1) ---TOE1(3)   <------ZmHOX2a(1)     <---------ANAC46  <---------TOE1(2) --------->TOE2(2)          <-   tgattttttctacttaggagataagtggggacatgttgatgtggaagaagacttcacatgttctatcattaaaacataagagaaacttccttacaaataa  12284600                               ------>ZmHOX2a(1)                           --------->ARR14(2)                           <---------ARR14(2)                         ------->TEIL                          ------>MYB83             --------->ZAT18 --------->ANAC55(2)                     <-----------GT1 --------------->AGL15      <---------MYB52(1)  <---------AHL20(2)         <---------TOE2(3)------>MYB46(1)          <---------ZAT18 <---------ANAC55(2)        <-----------GT1 <---------MYB59   ---------->DOF2   <---------At5g28300    --------->AHL20(2) ------->ZAT18 <---------At5g28300   <---------------AGL15 <-----------GT1    --------->YAB1 --------ZAT18<-----------GT1  <----------DOF2---------->DOF2<---------YAB1<----------DOF2   gtccaccatttaacatttaccatttaccaaatcctttttcaaaaaaaagaaagtccaccatttaccattatgtatttctttcatatttaatagcactctt  12284700                   <----------DOF2     --------->MYB46(3)             --------->REM1(1)   <---------At4g35610         ------>ZmHOX2a(1)       --------->At4g35610                                       <---------      ---------->ID1          ---------->DOF2                  ---------->DOF2    <----------DOF2   <   gattttttgtcctctacaactcttttacatttgaaagctgaaccaaagtttatatgcatatgaagaaaagagagtctctctctcctttatattatacgtt  12284800  Previous    Next  AGI:  At2g28630.1    Description:  beta-ketoacyl-CoA synthase family protein. Identical to 3-ketoacyl-CoA synthase 12 precursor (KCS12) [Arabidopsis Thaliana] (GB:Q9SIB2;GB:Q8LFQ0); similar to beta-ketoacyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT1G07720.1); similar to unknown [Populus trichocarpa] (GB:ABK95107.1); similar to 3-ketoacyl-CoA synthase 6 [Gossypium hirsutum] (GB:ABX10441.1); similar to 3-ketoacyl-CoA synthase 3 [Gossypium hirsutum] (GB:ABX10439.1); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392); contains InterPro domain Thiolase-like; (InterPro:IPR016039); contains InterPro domain FAE1/Type III polyketide Range:  from: 12282396    to: 12284322    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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