Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->GLK1(2)                                                           --------->WOX13(1) <---------GLK1(2)                                                <----------DOF2               --------->ARR14(2)                                                <---------DAG2         --------->ZAT6  --------->ANAC58                <---------YAB1             --------->HSFB2a(2)       <-----------GT1   --------->ANAC58         --------->ZAT14                   <---------HSFB2a(2)--------->YAB1  <---------ARR14(2)         <---------ZAT14       --------------->AtSPL3    <---------ATHB12   ----------->ARR10   cagttggatactacagttatgagggactctgaaaccgttctacttccagactttttcccatcaatcgaaatttacactcagattctgacaagtatggcta  12261600                   --------->ZAT14                   <---------ZAT14                --------->SPL7              <---------ZAT18              <---------SPL7             <---------ANAC46             <---------ANAC58             <---------ANAC58            --------------->AtSPL8          --------->ANAC46       ----------->HVH21     --------->At4g35610     <---------At4g35610                       <---------At4g35610               ------>ZmHOX2a(1)     --------->ZAT14                     <------ZmHOX2a(1)                       <---------HSFB2a(2)<     <---------ZAT18                 ---------->DOF2       --------->ZAT2       <---------LBD16     -     --------->ZAT18           --------->MYB52(1)          <---------ZAT2      <---------ANAC46    --     <---------ZAT14    --------->At4g35610 <---------At4g35610   --------->ATHB12           <-------   gagagagtgctcacggcgtacttcacagctatataacagaaaaggatgctgcttcttatcaagctggaccattggtgaatgtcctggagaattgtggtca  12261700            <---------MYB52(1)           <-------GAMYB       --------->MYB52(1)      ----------->HVH21     <---------MYB59    ----------->RAV1(2)   ------->TEIL   <------ZmHOX2a(1)                                                                 <   --------->MYB52(1)                                                                      --------->HSFB2a(2) ---------HSFB2a(1)                                                                        <---------HSFB2a(2) -------->HSFB2a(1)                       <---------WOX13(1)                            <----------DOF2 ------------->AtSPL3     ------->TEIL  --------->ATHB12                <----------DOF2<---------ANAC58 ----HVH21<---------MYB46(3)           <---------YAB1               <---------CCA1(2)  <---------ANAC58   gaacgtacctgaccgttggaggaatatggatgttgctatgtctgattgatgaaatgttgtctccaattccatctcttttagtaacaatggctttcagaag  12261800                                                                                          <---------MYB52(1)                                                                                    <----------DOF2                                                                              <--------ATHB1                                                                              -------->HAHB4                            <------ZmHOX2a(2)                                 --------->ATHB12                      --------->DAG2                                          <---------ICU4            --------->GLK1(2)   <---------ICU4                               <---------YAB1 <---------At5g28300 ---------->DOF2          <---------AHL20(2)             --------->ICU4        >> -----------GT1 <---------TOE2(3) <---------YAB1    <---------ANAC46         <---------ATHB12     <--   ttttaccatcagagaattttggttaaagcgatcattttgactgtgtattgaattgagtagaccatcaagttttgtgctaatgattcctttctgttttttt  12261900                                              --------->AHL20(2)                                              <---------AHL20(2)                                             --------->ICU4                                 <---------ARR11(3)                           --------->ANAC58   ----                                 --------->ARR11(3)                           --------->ANAC58   <---                               <---------AHL20(2)                        ---------->DOF2      ------- >>>>>>>>>>>>>>>LFY           --------->AHL20(2)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------GT1     --------->GLK1(2) <----------DOF2              *TSS <------ZmHOX2a(1)--------->ALFIN1   tttccagtggtatttttgagaatttgtccaaaataaatcttttagtaattaatatccaaaacttgttgataaggagaaagaagcaaaatgtggtcgcaaa  12262000            XXXXXXXXXXXXXXXXXXXX>MIR773                                       <---------At4g35610           --------->At4g35610                                     <-------TEIL       <---------ARR14(2)                                         <------ZmHOX2a(2)       --------->ARR14(2)                                        --------->ARR11(3)    <---------TOE2(3)                                   --------->YAB1 --------->AHL20(2)    <---------TOE1(2)                            <----------DOF2 <---------ARR11(3)    <---------TOE2(2)                         ------>ZmHOX2a(1)  --------->ARR14(2) ----->HSFC1(2)                  <------------------------ANAC81 --------->AGP1 ------HSFC1(2)      <---------ICU4           ===========================HOX2a_HOX2a            ----- --->DOF2  <---------At4g35610<------------------------ANAC81    <---------ARR14(2)<----------DOF2<--   gcttcttaggttctgctcccaaattatgtctcttctcatcttctcttcctcctttctctcatcacaagatccataaattcttctgctttgcccaaaatcc  12262100        <---------MYB52(1)    <---------ARR11(3)      <---------ZAT6          --------->ARR11(3)                                       <----------ID1  --------->MYB46(3)      ---------->DOF2                                            ---------->DOF2 >>>>>>>>>>>>>>>>>LFY  --------->At4g35610                                        --------->YAB1  --- ---->WOX13(1)         <---------At4g35610                              <---------ANAC58     -------- -------ATHB12  --------->WOX13(1)    ------->TEIL   <---------ALFIN1   <---------ANAC58     <-------   atcatccactgttagcatcaatctcagcaaaagacatttgaatctctcaattctcacactcttcttcaatgggttcttgttggataataaagccaaatcc  12262200                <-------TEIL               --------->CCA1(2)          ---------->DOF2    --------->ARR11(3)    <---------ARR11(3)    --------->ARR14(2)    <---------ARR14(2)     <<<<<<<<<<<<<<<<<LFY                                <-----------RAV1(2) ------>AtLEC2--------->ARR11(3)                                           ---------->DOF2 ->ARR14(2)   --------->ARR14(2)   <---------ANAC58                <---------TOE2(3) --ARR14(2)   <---------ARR14(2)   <---------ANAC58              ---------->DOF2  <------ZmHOX2a(1)   atggaagaacttcaaagatacactgattccaacaatggcttcactcttctcataccctcttcttatacaaaggtagagaaagcaggagctaatgctctgt  12262300                                                                          <------MYB83                                                                          <------MYB46(1)                                                                   ----------------->AGL1                                                                  <-----------------AG                       --------->YAB1                            <---------WRKY18(1)                    ----------->RAV1(1)                         ----------->HVH21 ------>ZmHOX2a(1)                 --------->ANAC58                  --------->LBD16<-----------------AGL1     <-------                 --------->ANAC58             ------>ZmHOX2a(1) --------->WRKY12 --------->TOE2(3)                 --------->ANAC46      <---------MYB52(1)       --------->WRKY38(1)         <--------        <<<<<<<<<<<<<<<<<LFY      <---------MYB46(3)   ---------->DOF2   --------->MYB59<-----------RAV1(1)   ttgaagaactaaacaatggaagcaacaatattggtgttgttgttagtcctgtccgtataaagagccttgaccaatttggttctcctcaatttgttgctga  12262400                            --------->ANAC58          <---------ARR14(3)                        ----------->GT1               <---------GLK1(2)                     ---------->DOF2                  <---------ARR11(3)                   --------->ANAC58                   --------->ARR14(3)              <---------ANAC58          ------->GAMYB--------->DAG2                 --------->ARR14(2)          <------MYB46(1) --ANAC46--------->ANAC46   --------->ANAC58          --------->ARR11(3)          <------MYB83<------ -At4g35610        --------->ANAC58   <---------MYB52(2) <-----------GT1 ------->TEIL <---------ANAC58   taagcttatcaacgcagagaaacgaaaggtaagaaaacaaacaaacccaaaaacaagattttctgtataaacatgtatgtgatttggttcttgttgttgt  12262500  Previous    Next  AGI:  At2g28600.1    Description:  ATP binding / ATP-dependent helicase/ nucleic acid binding. similar to ATP binding / ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT5G14610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46551.1); contains InterPro domain DNA/RNA helicase, DEAD/DEAH box type, N-terminal; (InterPro:IPR011545) Range:  from: 12258861    to: 12261900    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g28605.1    Description:  Identical to PsbP-related thylakoid lumenal protein 3, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8VY52;GB:P83050;GB:Q8S8B1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71682.1); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123) Range:  from: 12261965    to: 12262914    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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