Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->ANAC58           --------->ANAC58         <---------ALFIN1         ----------->RAV1(1)         --------->AtMYB61        --------->ANAC46        --------->MYB46(3)      --------->ANAC46 <---------GLK1(1)        <-----------GT1       --------->At4g35610                           <------ZmHOX2a(2) --------->GLK1(1)     --------->At4g35610      <---------At4g35610                          -------- ------>DAG2   --------->ANAC58              <------ZmHOX2a(1)                               <------- ----->DOF2--------->ANAC46     <-----------HVH21                                          --------->ICU4 -->AtMYB61--------->ANAC58-------->P   --------->ALFIN1         <-------TEIL            ---------->DOF2   aaggtatcccaccacacaaggtatcatctaaccccttcaaatgtgtaggaagatgacctgataaatgttcgttttcgaccttcttctccagtaaagatcg  12245800                                                             ----------->GT1                                                            --------->DAG2     --------->At4g35610                            --------->ZAT18           --------->YAB1          <---------ARR11(3)                        --------->DAG2             --------->WOX13(1)         --------->ARR11(3) ->ARR11(3)            ---------->DOF2   ---------->DOF2   ---------->DOF2---------->DOF2        <--- --ARR11(3)   <---------ANAC55(2)      <---------YAB1<---------ATHB12--------->AHL20(2) <---------WOX13(1)   agcctttgaacacattacatgaacaaaaagtactctagattataaaagcatatcaatcatataaagcaaaaaaaaataaagagcttacagattgacatgg  12245900                                                                                                -----                                                                                        --------->YAB1                                                                    <---------MYB52(1)<---------WOX13(1)                                          <----------DOF2     <---------At4g35610   --------->ATHB12                                      <---------CCA1(2)       --------->At4g35610  <---------MYB52(1)                                    <---------CCA1(2)       --------->MYB46(3)    --------->LBD16                                  ------>ZmHOX2a(2)       --------->MYB52(1)      <-----------TGA1       --------->At4g35610      <-----------ARR10        ----------->HVH21        <-----------HVH21   <---------REM1(1)            <---------ARR11(3)    <---------ARR11(3)         --------->ANAC55(2) ------ANAC46    <---------YAB1 --------->ARR11(3)  XXXXXXXXXXXXXXXXXXX>MIR775   <---------ANAC55(2)-   tggagaagtagcttcactgatgaatgaaattgctgatcttatctctttcattccaacatctaacagctccattagttcaaattccgtcattgataatgca  12246000                                                                                               <-----                                                       --------->At4g35610                     <-----                                               <---------WOX13(1)                         <---------YAB1                         <<<<<<<<<SARD1      --------->ATHB12                          --------->ICU4                --------->YAB1              --------->ICU4                       <---------DREB2C(2)               <---------YAB1       --------->TOE2(3)  <---------------------WRI1<---------DEAR3(1)      <---------AHL20(2) <<<<<<<<<CBP60g    <---------YAB1        ---------->DOF2<---------ANAC46 -->TEIL    <---------YAB1          --------->TOE2(2)--------->YAB1 ----------->GT1<------NtERF2 ----->ZmHOX2a(1)   --------->ANAC46--------->TOE1(2)--------->ATHB12       --------->TOE2(3)  <-----   tcctatattcaattactattatacccaaatttcgaaaacctaagacatgattgaatcatcggagaatataaagaaaaaccttggcggtgatgatgtttct  12246100                                                                                 <------NtERF2                                                                                <-----------HVH21                                                                                ------>NtERF2                                                                               --------->DEAR3(1)                                                                             <---------ATERF1(1)                                                                             ------>NtERF2                 --------->GLK1(2)                                           --------->LBD16       --------->ARR11(3)                                                   --------->ANAC46       <---------ARR11(3)                                                   <---------DEAR3(1) <---------At4g35610      --------->REM1(2)                                <---------LBD16 --------->At4g35610   <---------ANAC46                  --------------->AGL15 <---------ANAC46 ----ANAC58     <---------ARR11(3)                       <---------------AGL15 <---------DEAR3(1)   - ----ANAC58     --------->ARR11(3)                  <---------ANAC58  <---------ANAC58             <- ----ANAC46   <---------TOE2(3)    <---------CCA1(2)<---------ANAC58  <---------ANAC58 <---------KAN4(2)   tgcagcgaagatgtttgagattttggtgtgaagacccatttctccgatgagtttgtttgccattttttgttttcgtctccggcgtcggaaatattcttta  12246200                                      >>>>>>>>>E2Fd                                      >>>>>>>>>E2Fc                  <---------HSFB2a(1)--------->LBD16                  --------->HSFC1(2)--------->ANAC46                                    --------->ATHB12                  --------->HSFB2a(1)------>NtERF2                                     --------->ICU4                  <---------HSFC1(2)--------->ANAC58     --------->TOE2(3)           --------->CCA1(2) --------->At5g28300     <----------DOF2  <------------CBF------>ZmHOX2a(1)     ---------->DOF2  ---- ---------->GT1  <-----------ARR10  --------->ANAC58 ------>ZmHOX2a(1)       <----------DOF2--------- --------DEAR3(1)----------->ARR10 <---------LBD16   <----------DOF2  <------------CBF <---------YAB1   gacggtgaagagattagagaagcttctctttctctctcccgccaaattgagagtcctttccttactaaaccatattgggccttaaagagatgattaggcc  12246300                                                                                          --------->ARR11(3)                                                   <---------DAG2                         --------->AHL20(1)                                      <---------GLK1(2)                                   <---------AHL20(1)                                      --------->ARR11(1)                                  <---------AHL20(2)                                    <---------TOE1(3)                                  --------->AHL20(2)                          --------->SPL7<-------TEIL<----------DOF2                --------->AHL20(2)                        --------->LBD16--------->ARR14(1)                         --------->AHL20(2)                   <---------WRKY18(1)--------->ARR14(2)           <---------MYB52(1)  --------->YAB1    <---------MYB52(1)<---------LBD16 <---------ARR14(2)        ---------->ID1    <---------AHL20(2) ------->HVH21    ----------->HVH21 <---------TOE2(3)         <-----------GT1--------->YAB1 >MYB59       <---------YAB1        <---------YAB1 <----------DOF2<---------RAP2.6(3) <---------AHL20(2)   tgacccgttttgtattatccatgacccggaccatatttaagattcgttttgggccttttgggttttgccgttttggctatcaaaataaataatattttgg  12246400                                     <---------AHL20(2)                                 <---------ICU4                             ----------->GT1                                           --------->ICU4                            --------->DAG2                                <---------AHL20(2)                           ---------->DOF2                               --------->AHL20(2)       <--      <---------AHL20(2)--------->YAB1       ----------->GT1       <-----------GT1     <---------YAB1     --------->AHL20(2)<-------TEIL<---------AHL20(2)     <---------AHL20(2)          <---------TOE2(3)   cgaaaaatttaaaatgaataccacattcataaagtatatttttttgtttgtaaaatcgattttttttttttacaattttatgccaaataatgtttactaa  12246500          <---------YAB1          <---------AHL20(2)       <---------AHL20(1)       --------->AHL20(1)       --------->AHL20(2)       <---------ARR11(3)       --------->ARR11(3)       <---------AHL20(2)    --------->AHL20(2)                                                        ----------->GT1    --------->YAB1                   <---------MYB52(1)                       --------->YAB1   <---------YAB1                   ------>ZmHOX2a(1)           <---------AHL20(2)  --------->AHL20(1)                <----------DOF2            --------->AHL20(1)  --------->AHL20(2)               --------->TOE2(3)           <---------AHL20(1)  <---------AHL20(2)       ------>ZmHOX2a(1)                   --------->AHL20(2) --------->YAB1        <-----------GT1                         <---------AHL20(2)<---------DOF5.7(2) -------ICU4     <----------DOF2<---------ARR14(2)      ----------->GT1<---------ANAC46          <---   aaattataatatattatagcttttgtttcctgactatcctttatgtgaaaatttgaaatagtaaataaaatttgagtgaatggtaacgacataaactcaa  12246600                                                                 ----------->GT1                                                         --------->TOE2(3)                     ------                                           ----------->GT1     <---------ICU4                  ------                             <---------AHL20(2)          --------->YAB1                        ------                             --------->AHL20(2)        --------->ARR11(3)                  <---------YAB1                ------->TEIL<---------AHL20(2)      <---------AHL20(2)                  <---------YAB1        ------->TEIL    <---------YAB1------>ZmHOX2a(2)<---------ARR11(3)        --------->TOE2(3) ------DAG2  <---------YAB1 --------->AHL20(2)      --------->AHL20(2)         <---------TOE2(3)<----   tttttgtttgaatctatgaatgcattataaaaaaatttgatcgaatagaaaaatataaatcttaataatgtataaacaataaacgttgatatcattgttg  12246700  Previous    Next  AGI:  At2g28560.1    Description:  ATRAD51B/RAD51B; recombinase. Identical to DNA repair protein RAD51 homolog 2 (RAD51B) [Arabidopsis Thaliana] (GB:Q9SK02;GB:Q5H793;GB:Q5H794;GB:Q5K4Q0); similar to ATRAD51C (Arabidopsis thaliana Ras Associated with Diabetes protein 51C), ATP binding / damaged DNA binding [Arabidopsis thaliana] (TAIR:AT2G45280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21769.1); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553); contains InterPro domain DNA repair and recombination, RecA-like (InterPro:IPR016467); contains InterPro domain Rad51, Range:  from: 12244129    to: 12246163    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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