Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <-----------HVH21   <---------ARR14(2)   --------->ARR14(2)                    --------->ZAT18 ----HVH21                     --------->ANAC46    ---------->DOF2                --------->LBD16   - >bZIP60(2)                  <---------ALFIN1 <---------ZAT14                 <-----------GT1       <   caacaggtccgagacatcgagacacaactctccacataaaaactggactaaactaaagtgttcgacttcaaactcaaaataaaccggactaagtgtttga  12224800                 ------------>MYB.PH3(1)     --------->AHL20(2)     <---------AHL20(2)                                   ------->GAMYB                            --    <---------AHL20(2)                                    --------->YAB1                          ---    --------->AHL20(2)               ---------->DOF2     --------->MYB46(3)                       <-- <---------AHL20(2)             --------->LBD16   <----------DOF2         <---------ATHB12       <--- --------->AHL20(1)         <-----------GT1       <---------DAG2    <-----------GT1  --------->AHL20(2) --------->AHL20(2)   <---------MYB52(1)       <-----------GT1   <---------ICU4     <---------AHL20(2) -------->AHL20(2)   --------->At5g28300      <-----------GT1--------->ZAT6         --------->AHL20(2) ---------AHL20(2)  ----------->GT1  <---------ZAT14   <-----------GT1  --------->WOX13(1)      -----   aattaaattaataaaccaaaaaccgttaataaaccggactaaagtgttttaactttttaaccatcactaattaccaattatccaaaataaataaaccaga  12224900                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                             ----------->GT1 --------         --------->YAB1                                                  <-----------GT1     <-------    --------->LBD16                                                  <----------DOF2    <---------ANAC58 ------->KAN4(2)                                                   <XXXXXXXXXXXXXXXXXXXXMIR857<------ ------>KAN4(1)                                  <-----------HVH21 ------->TEIL  --------->AHL20(2) -------KAN4(1)                             --------->MYB52(1) <---------------AtSPL8   <---------ANAC58 ------KAN4(2)  >>>>>>>>>>GT-3b             <-----------GT1    --------------->AtSPL8 --------->ARR11(3) ---->YAB1  --------->YAB1             ---------->DOF2         <---------------AtSPL3 <-----------GT1   ataatccgaaataataagaaaaataggttttagaatacctagaaagtaactggtcgcatgagataaatgtacttttaacatgaaaaaataacttgccgtc  12225000                                               --------->YAB1                                               <---------ICU4                                               <---------AHL20(2)                                               -------->ATHB1                                               -------->HAHB4                                              <---------ATHB51                                              <---------YAB1                                              --------->ICU4                                            <--------ATHB1                                            --------->YAB1                                            <---------ICU4                                            --------->ATHB51                                            -------->HAHB4                                            <--------HAHB4                                           <---------YAB1                                           <---------ATHB51                                           --------->AHL20(2)                                           --------->ICU4                                         --------->YAB1                                    ----------->GT1                                    <------MYB83                  <---------WOX13(1)                                    <---------ANAC55(2)          <------------CBF                                    <------MYB46(1)             <---------AHL20(2)                                   --------->MYB59              --------->ATHB12                                   <---------TOE2(3)          <---------AHL20(2)                              <---------AHL20(2)       <-----------GT1        <------------CBF                              --------->AHL20(2)      --------->AHL20(2)    <---------AHL20(2) -NtERF2---------->DOF2       <---------AHL20(1)  --------->AHL20(2)        --------->AHL20(2) ---RAP2.6(3)                 --------->AHL20(1) <---------YAB1<---------AHL20(2)         <---------ARR11(3) ->ATERF1(2)                 --------->AHL20(2)<--------HAHB4--------->YAB1 --------->AHL20(1) --ATERF1(2)                 <---------AHL20(2)--------->ATHB51--------->AHL20(2)         --------->ARR11(3) -----HVH21           ----------->GT1   <---------YAB1<---------AHL20(2)   --------->AHL20(2)   aaaacaaaaaaaaagaacatgaaaatgaaaaataaattaggtataataattattatttaactatattaattgacaaaaaaaattgaatttgacatctttg  12225100           <------------CBF        <<<<<<<<<<<<<<<<<LFY                                        --------->ARR14(2)        ------>MYB83                                                <---------ARR14(2)             --        ------>MYB46(1)                                     *TSS   <---------GLK1(1)              <--       --------->ANAC58                                   <-----------ARR10                       <--       --------->ANAC46           ----------->RAV1(1)    <---------CCA1(2)                        ---       --------->ANAC58---------->DOF2                ------>ZmHOX2a(1) ------>ZmHOX2a(1)         ---      --------->MYB46(3) --------->DAG2         <-----------GT1    --------->GLK1(1) <---------GLK1(2)   aaaaaacaccagccattggcagaacaaaaggtttagccacagtttttttttttctcctcgtctcttcgcaaatcctcttcttccttcgattctctctgaa  12225200                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  ---             ------>ZmHOX2a(1)                                                                   <---            --------->TOE2(3)                                                                    ----         ------>ZmHOX2a(1)                                                                      <---- ------->RVE1(1)                                            --------->ANAC46                  ------- ---------ARR10                                             --------->ANAC58                  <------ -------ARR11(3)       <---------GLK1(2)                    --------->ANAC58               --------->TOE1(3) ------>GLK1(2)        --------->ARR14(2)           <---------CCA1(2)                      --------->TOE2(3) ------>ARR11(3)       <---------ARR14(2)         <---------CCA1(2)             <----------DOF2 <----   aatctcttctccttcctcaaaaaccgatactctcttcttcaatctccctctcttatctctccaagctaattctccaaaccgtcttttctcaaaccctaac  12225300       <---------TOE2(3)       <---------TOE1(3) -------->ANAC58 -------->ANAC58 ------TEIL ----->TEIL ------->SPL7 ------>MYB52(1)                                                     <---------TOE1(3) ------>SPL1(1)                                                    ---------->DOF2 ------SPL7                                               <---------ARR14(2)       <-----------GT1 ----->TOE2(2)                                            <---------GLK1(2)    --------->GLK1(1) -----ANAC58        <---------MYB52(1)                    --------->ARR14(2)  --------->ARR11(3) -->MYB52(1)       <-------GAMYB                         ------>MYB46(1)      <---------ARR11(3) ------------SPL14--------->MYB52(2)                  --------->ANAC46    ---------->DOF2 <----------DOF2 -----ANAC58      <---------MYB46(3)    <----------DOF2  ------>MYB83<---------TOE2(3)<----------DOF2   gtacggattagggtttttgttcgttgattccaaaggttacgactttcaatttctccaccaaattctctgtaaaggttaaagatttctactttcttttgag  12225400                                                              --------->YAB1                                                             --------->ICU4                                                           --------->YAB1                                                      ---------->DOF2                                                     <---------WRKY38(1)                   <----------DOF2                   <---------WRKY45                              <-                  <---------DAG2                     <---------WRKY12  <-----------GT1             --               <-----------GT1                      --------->WRKY18(1)--------->YAB1              <-            <----------DOF2 <---------YAB1       <---------AtMYB61<----------DOF2              ------        <---------GLK1(2)  <-----------HVH21     --------->ALFIN1<---------ICU4    <----------DOF2 <-    ----------->RAV1(2) <-------GAMYB          <---------ANAC46--------->GLK1(2)   <---------DAG2<---   ttcttagcctgattctttaaccttttcgttgtcattcgtcggaattttggagtggtcaaagtaataatctttatcacaattcaagctttttgagagttga  12225500    <---------YAB1 --------MYB46(3) --------->GT1                  <---------AHL20(2)    <---------ZAT14 -----MYB83               <---------ANAC58            --------->ZAT14 --->ATHB12               <---------ANAC46            <---------REM1(2) -----MYB46(1)<----------DOF2   --------->AHL20(2) ---------->ID1       --------->ATHB12            - ------WOX13(1)           <---------ANAC58  <---------TOE2(3)          <---------YAB1   >>>>>>>>>>>>>   ttggttaaaattgtttctttttgtttttgcgagtttaatttagtttgagatttgtcttcactggtttctggttttgattagaagttgtttctccattgtt  12225600                                                                                           --------->ATHB51                                                                                           <--------ATHB1                                                                                           <---------ICU4                                                                                           --------->AHL20(2)                                                                                           <---------AHL20(2)                                                                                          --------->ICU4                                                                                        --------->YAB1                                                                                  <---------WOX13(1)                                                                                <---------ICU4                                                                                -------->HAHB4                                                                                <--------ATHB1                                                                                --------->ATHB12                                                                                --------->YAB1                                                                               --------->ICU4              <---------ANAC46                --------->ATHB51                 <---------ATHB12 --------->DAG2                              <---------AHL20(2)                <---------YAB1      <- --------->DOF2                              <---------YAB1                   <---------TOE2(3)    -- >>>>LFY<------ZmHOX2a(1)                  --------->YAB1             <---------YAB1   <---------AHL20(2)   taaaaagtaaggagtaatgtgtagttgcagtagttttttttttttttataattgagaattgtggattatgttctgattctaatgattgtttaataatttg  12225700  Previous    Next  AGI:  At2g28540.1    Description:  nucleic acid binding / nucleotide binding / protein binding / zinc ion binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G45630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21772.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 12225160    to: 12230905    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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