Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------YAB1           <---------AHL20(2)         <---------RVE1(1)          <---------AHL20(2)          --------->GLK1(1)   --------->TOE2(3)                 --------->ARR11(3) --------->GLK1(2)                   --------->ARR14(2) ----->ANAC55(2)                     <---------ARR11(3)                                --------->ARR14(2) ------ANAC55(2)   <----------DOF2   <---------ARR14(2)                                <---------ARR14(2) --->AHL20(2)    XXXXXXXXXXXXXXXXXXXX>MIR859                                  <---------ATHB12 ------GT1--------->AHL20(2)         <---------GLK1(2) ----------->GT1    --------->MYB46(3)  -------   cataatctaaattttaattctcttttgtaaactcaaacagatattcaacctcgtttattgtaaaatataaactctaaccattcattctaaatccgaaccg  12216600                          <-----------GT1             --------->AHL20(2)                   --------->AHL20(2)                 <---------AHL20(2)    --------->TOE2(3)  <-----                --------->YAB1                       --------->AHL20(2)   <---------ARR11(3)  <------                --------->AHL20(2)       --------->TOE2(3)      --------->AHL20(2)        --------->AHL20(2)           <---------MYB52(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR11(3)  -------          <-------GAMYB  <-----------GT1 --------->TOE1(3)      <---------AHL20(2)        <---------AHL20(2)          --------->At5g28300     --------->YAB1  <---------RVE1(1) ----------->GT1    --------->YAB1  <---------AHL20(2)<---------AHL20(2)   <---------MYB59    <---------ANAC55(2)     <----------DOF2 -->MYB46(3)   <---------YAB1  <----------DOF2   <---------MYB52(1) --------->YAB1  ------>ZmHOX2a(1)   atatataatctcggttaattataaaatttaacccttttataaacctaaaccgatatttaatcacgtttaattgtaaaatctaaatccttttataaattaa  12216700                <---------MYB46(3)         <---------AHL20(2)                                  <---------YAB1    --------->TOE2(3)  <-- ----AHL20(2)   <---------DEAR3(2)               --------->AHL20(2)       --------->AHL20(2)   <----- ---AHL20(2)   <---------DREB2C(2)      <---------YAB1    <---------MYB52(1)  ----------->GT1-------- -->AHL20(2)<-----------RAV1(1)       --------->YAB1 --------->GLK1(2) --------->YAB1       <--------   atctaaactttttaatgtcggtttgaatttataaacgggattataactaaaaaaaattctgttatgtttttagtcataaaatgttaatttgtttatgatt  12216800                                                                              ---------->DOF2                                                                           --------->ANAC58        <-                                                                          --------->SPL7           -- -------YAB1                                                            <---------SPL7   --------->AHL20(2) ----YAB1        <---------ANAC46                                       --------->LBD16  <---------AHL20(2) ->YAB1<---------ATHB12  <---------YAB1------->GAMYB------->TEIL      <---------LBD16 <----------DOF2 -YAB1 --------->MYB46(3)<---------AHL20(2) --------->YAB1 --------->ANAC46--------->ANAC58   -------   atttttgcaaccatttgttttgtgtttataattgttttcaaccgaatgaaaatgaatttccaccagacttataccggacgaaaagagtcttttaatttca  12216900                                                                                   ----------->HVH21                                                                                 ------>ZmHOX2a(1)                                                                                 ====================                                                                               --------->HSFC1(2)                                                                               ------>ZmHOX2a(2)                                                                               <---------HSFB2a(1)                                              <---------LBD16                  <---------HSFC1(2)              <-------TEIL                  <---------ETT(2)                  <------ZmHOX2a(2)             --------->AtLEC2          <---------At4g35610                   --------->ARR14(2)   <--           <---------At4g35610     <-----------HVH21                         <---------ARR14(2)   <--     <------------CBF             ===============================================bZIP_DOF        <---    --------->ATHB12              =============MYC_MYB                   *TSS--------->ARR11(3)  <---   <---------AHL20(2)  ------>ZmHOX2a(1)    --------->ETT(2)          <----------DOF2<---------LBD16   <---------YAB1  --------->ARR14(2)  --------->At4g35610          <---------At4g35610      -------- --------AHL20(2)  <---------ARR11(3)  <-------GAMYB           --------->GLK1(1) ==================== ------->AHL20(2)  <---------ARR14(2) --------->MYB52(2)       <---------GLK1(1)--------->TOE1(2)---- ----->CBF --------->At4g35610    --------->TGA1a            --------->ZAT14 <---------ARR11(3)  ----   attttttaattggagatgcaaaatcctcgttttctcatgtcagttgtcgacgggaacaaaaactgaactccgcttctaagatccttcgacggagagaaag  12217000             ------>ZmHOX2a(2)         ----------->HVH21       <------ZmHOX2a(2)       --------->CCA1(2)      --------->ARR11(3)      --------->ARR14(2)      <---------ARR11(3)      <---------ARR14(2)      --------->AGP1      <-----------ARR10      <---------AGP1     <---------CCA1(2) =============HOX2a_HOX2a -------RVE1(1) -------CCA1(1)                                                                               <------ZmHOX2a(1) ------AHL20(1)                                                                              -------- ------ARR11(3)        --------->YAB1                               <---------ZAT14          <------- -->DOF2------>ZmHOX2a(2)                                 <---------HSFB2a(2)     --------->ANAC58 ==============HOX2a_HOX2a                                --------->HSFB2a(2)     --------->ANAC46 ----->AHL20(1)        <---------ICU4<-----------GT1  <----------DOF2             --------->ANAC58 ----->ARR11(3)      --------->GLK1(2)       <---------YAB1         --------->ZAT14         ---------   atatttcagatctgatcggagagaatcattctcaaaatttctccattctaatttctctttctcgagagagtgaagagagacaacaaggaaggaagaggaa  12217100                                     --------->At4g35610                                    ----------->HVH21                                   ------>ZmHOX2a(2)                                  <---------At4g35610                                 ------->TEIL                                 <---------AGP1                                 --------->ARR14(2)                                 <---------ARR14(2)                            --------->At4g35610                            <---------At4g35610                          <-----------RAV1(2)                          <------NtERF2                         <---------At4g35610          ----------->HVH21              <---------ARR14(2)     <------ZmHOX2a(1) <---------LBD16              --------->At4g35610              --------->ARR14(2)     =====================================HOX2a_HOX2a ----------->TGA1   --------->YAB1 --->GT1--------->ICU4 <---------RAP2.6(2)  --------->SPL7              <---------YAB1 ---ID1--------->GLK1(1) --------->LBD16 <---------ANAC58          <---------At4g35610   <---------At4g35610 -->GT1<---------GLK1(1) ------>NtERF2   <---------ANAC58          --------->At4g35610   --------->At4g35610   aaatggaggaattcttagataagttgccgcagatggatctgatgcgttcggagaagatgacgcttgttcagcttatcatccctgttgaatccgctcatcg  12217200                                          <---------bZIP60(1)                                          ================================================bZIP_DOF                                          <---------ANAC46                                          --------->TGA1a                                          --------->bZIP60(2)     <-------TEIL                 ------                                          --------->bZIP60(1)     ------>ZmHOX2a(2)            <-----                                          <---------O2           <------ZmHOX2a(2)             ------                                          <---------TGA1a       <---------GLK1(2)             <------                  <---------ZAT2          --------->O2          <---------ARR14(2)         <---------TOE2(3)                  --------->ZAT2       ----------->HVH21        --------->AGP1            --------->MYB52(1)              <------NtERF2           <---------HSFB2a(2)       --------->ARR14(2)    --------->GLK1(2)            <---------DEAR3(1)        --------->HSFB2a(2)      --------->At4g35610    <-----------ARR10     --------->ANAC55(2)          --------->ARR14(2)           <---------At4g35610    ------->TEIL     <---------ANAC55(2)          <---------ARR14(2)          ----------->ARR10<----------DOF2<------   ttccatcacttatctcggcgagctcggactcttgcagtttcgcgacgtgagtgtgttttaaactcagatccgtcttcttctctttacgaatctaacgaat  12217300                      --------->ATHB12                     <-------TEIL         --------->MYB52(1)                                    --------->YAB1 --->GLK1(2)     <---------TOE1(3)                     ------>ZmHOX2a(2) ------ARR10     --------->MYB59              <---------ARR11(3) ->TEIL<---------MYB52(2)                     --------->ARR11(3) ---GLK1(2)      <---------TOE2(3)           <---------At4g35610     ------>ZmHOX2a(2) ---ARR14(1)     <---------AtMYB61 <---------ZAT6     <---------At4g35610   ctcttcgtaactatcggtttaggttgattagaatttagtgagaagtgagatgtttgatctcacaatgttgatccgtctctattgatgtgttacttcgacc  12217400                      <----------DOF2                     ------>ZmHOX2a(2)                   <------MYB46(1)               --------->YAB1                            <------MYB83              <---------ZAT6                           <--------P                    <---------REM1(1)              --------->ICU4                          <---------ANAC46     --------->GLK1(1)          <---------ZAT14                            <---------MYB46(3)    <---------GLK1(1)          --------->ZAT14        <---------MYB46(3)  --------->ATHB12     --------->ARR14(2) <-------   <---------ZAT18 --------->ARR11(3)         --------->ANAC58            <---------ARR14(2) --------   --------->ZAT18 <---------ARR11(3)         --------->ANAC58        <---------LBD16<-----------RAV1(1)   acgagtggacattgtagtgatgatctttttgaaattggttgaactggaacgaaattggttggatttagcattagcggatttcaattggtgttgcaaattc  12217500  Previous    Next  AGI:  At2g28520.1    Description:  VHA-A1 (VACUOLAR PROTON ATPASE A 1); ATPase. similar to VHA-A2 (VACUOLAR PROTON ATPASE A2), ATPase [Arabidopsis thaliana] (TAIR:AT2G21410.1); similar to VHA-A3 (VACUOLAR PROTON ATPASE A3), ATPase [Arabidopsis thaliana] (TAIR:AT4G39080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21782.1); similar to putative vacuolar-type H(+)-ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD73785.1); similar to hypothetical protein OsJ_003881 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14056.1); contains InterPro domain ATPase, V0/A0 complex, 116-kDa subunit; (InterPro:IPR002490) Range:  from: 12216973    to: 12222972    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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