Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                 ----                                                                                                 ----                                            --------->MYB46(3)                                 <-----                                     <-----------GT1                                           ------                                 <---------AHL20(2)                                            <-----                                <---------AHL20(2)                                             <-----                                <---------AHL20(1)                                             <-----                             <---------AHL20(2)                                              -------- --------AHL20(2)           <---------AHL20(2)                                               ------>MYB83 ------>AHL20(2)       <---------ATHB12--------->TOE2(3)                                     ------>MYB46(1) -------AHL20(2) <-----------GT1--------->AHL20(2)                    <---------ARR11(3)    ------>ZmHOX2a(1) ->YAB1   ------>ZmHOX2a(2) --------->AHL20(2)             ----------->GT1              <-----------GT1   ataaatagatgatccattttctccaatctattaattttttttcttaacaactaattttaagaagaaaatcaagatgctacaaaactgttttttcctacca  12167900       <---------At4g35610 -------ATHB12 -->MYB46(1) -->MYB83 ----MYB46(2) --->MYB46(3)                                             --------->YAB1                            - ----MYB59                                               <---------ATHB12    <---------AHL20(2)    <- ----MYB111(2)                                        <---------AHL20(2)    --------->YAB1 --------->DAG2 ----MYB111(1)         <---------MYB46(3)            --------->AHL20(2)    --------->AHL20(2)  ------ >P    --------->At4g35610                        --------->ATHB12     --------->AHL20(2) ---------->DOF2   aacattttcagcacaaaaactacatttgttcggattgtatgtcatgacttcttgatttaatcaagagacaaaaaaaaataaaaatgtattcaaaaagttg  12168000               <---------WOX13(1)              <---------ANAC58              <---------ANAC58              <------------CBF         ----------->TBP                         ------->TEIL             --------->ATHB12          <---------YAB1                        <-------TEIL  --------->YAB1                  <---------ZAT6            ----------->GT1 --------->ANAC58 -------->ARR11(3)     --------->AHL20(2)                 ---------->DOF2   --------->ANAC58       -- --------CCA1(2)       <---------AHL20(2)      ---------->DOF2   ---------->DOF2                   <- ----->GT1  <---------YAB1        ----------->GT1    ---------->DOF2        --------->AtLEC2       <-   tatatcatgacttcttgattgccatttaaactacaagtgttataaatagaaaagaaaaagaaaagaaaaaagagagacatgcatccaagtttgaaatgtg  12168100                                                  ===================================================                                                  <---------------AGL15          <---------ANAC58              --------->YAB1          <---------ANAC58            <---------AHL20(2)  --------->At4g35610                 --------->AHL20(2)                             <---------At4g35610 ------->At4g35610         <------ZmHOX2a(2)      --------------->AGL15         <---------GLK1(2) --------ZAT2           <---------MYB46(3) <-----------GT1                  <------------CBF      <-- --------At4g35610     --------->ALFIN1<---------YAB1        <------------CBF --------->ICU4     ----   aagctgcttaatgcgttagacatgggtggatcaaacacattttaataacattctatatttgttaattgtcgaaacatgtattgattctgcttcttccatt  12168200                                              <------------CBF                                           ------------>CBF                                          --------------->AGL15                                          <---------------AGL15                                    --------->ARR14(2)                                    <---------ARR14(2)                                    <---------ARR11(3)          <<<<<<<<<GATA-1                                    --------->ARR11(3)          <<<<<<<<<GATA-3                                    <---------ARR14(3)          <<<<<<<<<GATA-2                 ----- =========================================================MADS_MADS                            ------ -------YAB1 <----------DOF2        --------->ARR14(3)          <<<<<<<<<GATA-4     --------->REM1(1) ----->AHL20(2)                   ----------->ARR10         ------------>CBF       <-------TEIL<<<<<<   tttattctctccctcctttgttcttcgtaacgagagaagatattccacaattggtgtcttaattcaatccacattaactcgaagctacattatcaaatca  12168300                                                                                            ---------                                                                           <---------GLK1(2)<--------                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                    <-----------RAV1(2)  --------->At4g35610                                                                    ================================RAV                                                                    <---------LBD16      --------->ZAT2                                                                 --------->At4g35610     <---------ZAT2                                                                 <---------ZAT14         <---------At4g35610                                                                 --------->ZAT18      <---------At4g35610                                                             --------->LBD16          ----------->RAV1(2)        --------->DAG2                                       <---------MYB46(3)   ------>ZmHOX2a(1)       ---------->DOF2                                      <---------ANAC46      <-----------HVH21   <----------ID1                                           <---------ANAC58 <---------HSFB2a(1)   --   <---------ANAC46                                         <---------ANAC58 --------->HSFB2a(1)   -- ------->CBF                                               <---------LBD16<------ZmHOX2a(1) --------- --->YAB1                        --------->YAB1         <----------DOF2<------ZmHOX2a(1)<-----------RAV1(1) <<<<<<<<<<<LFY            <---------YAB1    ------>ZmHOX2a(1)   <---------At4g35610<---------ALFIN1   caatggcgaaaaagctctgtttcattgttatgctatcaatatgtctcctaatttttgactttgcgggtgctcaggaggaatctccttcacctgctgctgt  12168400                                                                        <---------At5g28300                                                                       <-----------GT1                                                            --------->GLK1(2)                   -----                                                           --------->ARR11(3)                  ------              --------->TOE2(3)                            <---------ARR11(3)                  <-----         --------->DOF5.7(2)                               --------->ARR14(2)                  <-----         ----------->HVH21                                 <---------ARR14(2)                  <-----       <---------ANAC58               --------->DEAR3(1)   <---------GLK1(2)                   ------       <---------ANAC58             <---------At5g28300   <---------HSFC1(2)                  <------     <------ZmHOX2a(1) <---------ARR14(2)                 --------->HSFC1(2)                  <------ >ZAT2 <---------ANAC46--------->ARR14(2)                 --------->HSFB2a(1)                 ------- -At4g35610   --------->TOE1(3)    <-----------GT1        <---------HSFB2a(1)                 ------- ------->ANAC58        <---------GLK1(2)                 ----------->ARR10--------->DEAR3(1) -------- ------->ANAC58  <---------WRKY12<-----------HVH21 --------->LBD16   <-----------HVH21 --------->LBD16 >At4g35610 ------->TEIL      <----------DOF2    <---------LBD16  <----------DOF2    <---------LBD16   ctcgccaggacgtgaaccttcaacggattctcctttgtcaccgtcttcatcaccggaagaagattctcctttgtcaccgtcttcatcaccggaagaagat  12168500                                             --------->DEAR4(2)       --------->ANAC46                      <------NtERF2       <---------ALFIN1                     ------>NtERF2      --------->MYB46(3)        --------->GLK1(2)  ------>ZmHOX2a(1)            <---------ARR11(3) ---->GLK1(2)                  --------->ARR11(3) --->ARR14(2)                  <---------ARR14(2) ----ARR11(3)                  <---------GLK1(2)                                 --------->DEAR4(2) ----GLK1(2)                   --------->ARR14(2)                                <------NtERF2 ----ARR14(2)                 --------->HSFB2a(1)                               ------>NtERF2 --->ARR11(3)                 <---------HSFB2a(1)                  --------->ARR14(2) ---HSFB2a(1)                 <---------HSFC1(2)                   <---------GLK1(2) ---HSFC1(2)                  --------->HSFC1(2)                   <---------ARR14(2) -->HSFB2a(1)          --------->LBD16------>ZmHOX2a(1)    --------->LBD16------>ZmHOX2a(1) -->HSFC1(2)         <---------LBD16  ----------->RAV1(2)<---------LBD16  ----------->RAV1(2) --->ARR10<---------ALFIN1   ----------->ARR10--------->DEAR3(1) ----------->ARR10--------->DEAR3(1)   tctcctctcccaccatcttcatcaccggaagaagattctcctctggcaccgtcttcatcaccggaagtagattctcctctggcaccgtcttcttcaccag  12168600                  --------->DEAR3(1)                 <------NtERF2                ------>NtERF2               --------->DEAR3(1)                    <------NtERF2               <---------ALFIN1                     ------>NtERF2              --------->MYB46(3)                   <---------ALFIN1                       --------->DEAR3(1)              <---------MYB55(2)                 ------>NtERF2                           <---------LBD16             <---------At4g35610              --------->At4g35610                        <---------At4g35610             --------->At4g35610              ------>ZmHOX2a(1)                         --------->MYB52(1)            --------->ANAC46                  <---------At4g35610                      <---------WRKY38(1)         --------->ANAC46               --------->GLK1(2)                            <-----------HVH21    <---------GLK1(1)                  <---------ARR14(2)                  <---------ARR14(2)   --------->ARR14(2)                  --------->ARR14(2)                  <---------GLK1(1)   <---------GLK1(2)                   <---------GLK1(2)                   --------->GLK1(1)   <---------ARR14(2)                ----------->ARR10--------->DEAR3(1)   --------->ARR14(2)   -----   aagtagattcccctcagccaccgtcttcttcaccagaagcagattctcctctgccaccgtcttcttcaccagaagcgaattcccctcagtcaccggcttc  12168700                                                             <---------HSFB2a(1)                                                           <---------ARR14(2)                                                           <---------GLK1(2)                                                ------>ZmHOX2a(1)                                            <---------ALFIN1--------->ARR14(2)                                            --------->AtMYB61--------->HSFB2a(1)                                      --------->DEAR3(1)   --------->ARR14(2)                                     ------>MYB46(1)    --------->RAP2.6(2)                                     ------>MYB83     <---------ZAT2                                   --------->AtMYB61  --------->ZAT2                          -------                                   <---------ALFIN1 ---------->CDC5                     --------->MYB46(3)                                   --------->DEAR3(1) --------->At4g35610           ------>ZmHOX2a(1)        --------->TOE1(3)         --------->MYB46(3)<-----------RAV1(2)           ----------->RAV1(2)        --------->TOE2(3)       --------->REM1(1)  ------>ZmHOX2a(1)            <---------ARR14(2)       ----------->RAV1(2)    ------>ZmHOX2a(1)<---------ALFIN1   ------>ZmHOX2a(1)--------->TOE1(3)     --------->ARR14(2)<---------ARR14(2)  <---------ZAT2 <------NtERF2         --------->ARR14(2)     <---------ARR14(2)--------->ARR14(2) ------>NtERF2<---------LBD16          --------->ARR11(3)  --------->ANAC46     <---------GLK1(2) <---------ALFIN1--------->LBD16       <---------CCA1(2) ---->REM1(1)     --------->MYB52(1)--------->ABI4(1) <---------At4g35610    --------->YAB1 <--------   atcaccgaaacctgaatccctagcggattctccttcaccacccccacctcctcctcagccggaatctccttcttctccatcatatcctgaaccagcacct  12168800  Previous    Next  AGI:  At2g28440.1    Description:  proline-rich family protein. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G45230.1); similar to unknown [Populus trichocarpa] (GB:ABK92716.1); contains InterPro domain Cell surface antigen (InterPro:IPR004829) Range:  from: 12168303    to: 12169109    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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