Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                            <--------                                                                                         <---------ICU4                                                                                 --------->AHL20(2)                                                                         --------->AHL20(2) <--------                                                                         <---------AHL20(2) ---------                                                                    <---------YAB1      --------->ICU4                                                                    --------->ICU4     <---------AHL20(2)                                                              <-------TEIL   --------->AHL20(2)   ---                                                          <---------ICU4--------->AHL20(2)  ---------        <---------YAB1                                   <---------YAB1 <---------AHL20(2) <---------AHL20(2) ----------DOF2              <---------ICU4            --------->YAB1<---------ICU4  <---------AHL20(2) ----->ARR11(3)             --------->AHL20(2)    <---------YAB1  --------->YAB1 <---------AHL20(2)-- ------ARR11(3)   <----------DOF2        <---------GLK1(2)<---------AHL20(2) <---------AHL20(2)<-----   atctttatttatgctacatgctttaatagaataaatacaaatagaatttgatatgaataataaatgcatcataatttaaaaaattatataaaaattattt  12126000                                    <---------AHL20(2)                                 --------->AHL20(1)                                 <---------AHL20(1)                                <---------AHL20(2)                              <---------AHL20(2)                            --------->AHL20(2)                        --------->AHL20(2)                        <---------AHL20(2)  --------->GLK1(1)   <---------AHL20(2) -------HSFB2a(2)   --------->AHL20(2)<---------AHL20(2)                            <----------DOF2 -ICU4 <---------YAB1 --------->AHL20(2)--------->AHL20(2)                        ---------->ID1    - -AHL20(2)      --------->AHL20(2)<---------AHL20(2)                             <-----------GT1    - >AHL20(2)  --------->ICU4--------->AHL20(2)                                 <---------AHL20(2)     < ------>HSFB2a(2)   <---------AHL20(2)--------->AHL20(2)                  <---------AHL20(1)        < >ATHB51    <---------YAB1<---------AHL20(2)                              --------->AHL20(1)       -- ------->LBD16 <---------YAB1 --------->AHL20(2)                       --------->AHL20(2)       ----- ------GT1--------->CCA1(2) <---------AHL20(2)                         --------->YAB1           <----   ccagatttcatgatatgattatatatatatatatatatatttttatatataagcatttttagtttccttcaaataatattttttttcttttttttcaaaa  12126100                                                                                     <---------AHL20(2)                                                                                     --------->AHL20(2)                                                                                   --------->AHL20(2)                                                                                 <---------AHL20(2)                                                                               <---------AHL20(2)                                                                             <---------AHL20(2)     <---------AHL20(2)                                                      --------->AHL20(2)    --------->AHL20(2)                                                     <---------AHL20(2)    <---------AHL20(2)                                                     --------->AHL20(2)    <---------AHL20(1)                                               <---------AHL20(2)--------->AHL20(2) <---------AHL20(2)                 --------->ZAT14              --------->AHL20(2)<---------AHL20(2) -------->AHL20(2)             <---------ARR14(2)              <---------GLK1(2) --------->AHL20(2) -------->AHL20(1)             --------->ARR14(2)        --------->YAB1  <---------AHL20(2) ---------AHL20(1)           <---------MYB46(3)         <-------TEIL --------->AHL20(2)<---------AHL20(2) ---------AHL20(2)        <---------MYB46(3)        --------->AHL20(1)   --------->AHL20(2) ------->AHL20(2)        <---------AtMYB61          <---------ARR11(3) --------->AHL20(2)--------->AHL20(2) ---->AHL20(2)   <----------DOF2    <---------ZAT14 --------->ARR11(3) <---------AHL20(2)<---------AHL20(2) -----AHL20(2)---------->ID1<---------ANAC46  <-------TEIL <---------At4g35610 --------->AHL20(2)   <   aattaattttttttttgttcttttccgatggtggatactatactcatatacatatatattcatcagattatatatatatatatatatatatatatataag  12126200                          --------->AHL20(2)                         <---------AHL20(1)                         --------->AHL20(1)                         --------->ARR11(3)                                                      <---               <---------AHL20(2)                                                          --------->AHL20(2)               --------->AHL20(2)                                              ======================              <---------AHL20(1)                                               <---------------AGL15              --------->AHL20(2)                                               --------->TOE2(3) <---              <---------AHL20(2)                       ----------->GT1         --------------->AGL15          <---------AHL20(2)                      <------ZmHOX2a(1)           ----------------->AG   <-------GAMYB         <---------ARR11(3)    <-----------RAV1(2)            ----------------->AGL3-  --------->ALFIN1 --------->AHL20(2)      ---------->DOF2           --------->ANAC46      --------->ICU4 ---------ANAC46   <---------AHL20(2)   <------ZmHOX2a(1)   ---------->DOF2   =======================   tagtgtgttgttttaatttaattaaaaaatatttatagtgaaggagaaagcaggagcgagtttaaagctctaagcctctaacctatataagaaatattta  12126300           ------>ZmHOX2a(2)          <------ZmHOX2a(2)                       <------------CBF         --------->ARR11(3)                    ------------>CBF         <---------ARR11(3)                --------->HSFC1(2)       <---------ALFIN1         --------->ARR14(2)                <---------HSFC1(2)    <-----------GT1         <---------ARR14(2)       --------->AHL20(2)           --------->ARR11(3) ------TOE2(3)                  <---------------AGL15         <---------ICU4 ===============================================MADS_MADS ----------->TBP                        *TSS ------TOE1(3)                  --------------->AGL15   --------->YAB1                          ----- -------->WRKY18(1)            <-----------------AGL3  <---------YAB1                         ------- ===============================================MADS_MADS <---------YAB1        ----------->GT1 <----   aggtcaaactagatccctaaattcagacatatagcttaaaatagaaacatccaattgattataaatatcaccacattttgttaagttaaaaaaactatat  12126400                                                                                                   --                                                                                                  <--                                                               --------->YAB1                     --- ------>TBP                                        <---------AHL20(2)                          <----- ---->TBP                   <---------TOE2(3)      --------->AHL20(2)                    --------->ZAT14 -----AHL20(2)         <----------DOF2 ----------->GT1        <---------YAB1             <---------ZAT14   aaaaaaaaaacttattttgttcattcttttaagtttaaaaacagtcaattcatttatatcatctatgatgaagaaactcattcaactctcgttcactgtt  12126500                                                 --------->TOE2(3)                                              --------->YAB1        <-----------GT1                      <---------YAB1   --------->ARR11(3)                --------->ARR11(3)                  <---------HSFC1(1)   <---------ARR11(3)             --------->AHL20(2)   <---------AHL20(1)--------->HSFC1(1) ------->YAB1                     <---------AHL20(2)   <---------ARR11(3)<---------HSFB2a(2) -------YAB1            <------MYB83<---------CCA1(2)  --------->ARR11(3)--------->HSFB2a(2) ------>ICU4            <------MYB46(1)     <-----------GT1    --------->ANAC46 ----MYB52(1)          <---------TOE1(2)   --------->YAB1    ------>ZmHOX2a(1)                <------   atgattatcttcaccattcttgtgctaggtttgtatttatatctattatcatcttaatatatcctacacaattttctagaagaaagaatgtcatattaac  12126600                                                                               --------->AHL20(2)                                                                          --------->MYB46(3)                                                                        ------>MYB46(1)                                                                        ------>MYB83                           --------->TOE2(3)                            --------->MYB52(1)                       <----------DOF2                                --------->AtMYB61          <---             --------->AHL20(2)                            ------>ZmHOX2a(2)   <---------AHL20(2)----             <---------AHL20(2)<---------AHL20(2)  <---------AHL20(2) <---------MYB46(2)  <---------- -----GT1 --------->WOX13(1)  --------->YAB1 --------->TOE2(3)        <---------MYB59----------->GT1   tctttgaaatatcaattaaactacgctttccataatattgaattcagccttatatatatgatccatattagacctaaccaaaaaattgagttaaactatt  12126700                                                         <---------YAB1                                                       --------->YAB1                                                      <---------YAB1                                                    <---------ICU4                                                   --------->AHL20(2)                                        <---------AHL20(1)                                        --------->AHL20(1)  <---------YAB1                                  --------->AHL20(2)--------->YAB1        --------->TOE2(3)         <---------AHL20(2)-------->ATHB1               --------->YAB1        --------->TOE1(3)       --------->AHL20(2) <---------AHL20(2)           --------->ICU4 ------------AtSPL8       <---------ZAT6<---------AHL20(2)--------->YAB1      --------->YAB1 ----------->AtSPL8       <---------ANAC46         --------->ICU4       <----------DOF2 -GT1   <----------DOF2   ----------->GT1          <---------ATHB51  <---------YAB1     <-----------RAV1(1)   ttgtactaaactttaaaaaatagtcgtggtgtaaatttatattatattttcaaattattatcatagttgttatgctttagtaataatcttatgttgtttg  12126800                                                        <---------ANAC46                                                        <---------ANAC58                                                        <---------ANAC58                                                   <------MYB46(1)                                                   <------MYB83                                  ----                                           <---------ARR14(2)                                   <----              ------->TEIL           ------->TEIL  <---------MYB46(3)                     <---------YAB1              <---------AGP1   <---------AHL20(2) <---------AtMYB61                    --------->AHL20(1)        <---------AHL20(2)  <---------AHL20(1)   <---------MYB52(1)                    --------->AHL20(2)       --------->AHL20(2)   --------->AHL20(1) <-----------RAV1(1)                     <---------AHL20(1)  --------->YAB1------>ZmHOX2a(2) <---------YAB1<-------GAMYB        <----------DOF2   <---------AHL20(2)   acaagaatatttaatggatctaaacacatatatattatgaatgcctattctgttggtcgcttggacaaagacttttatattttagacattttattagtat  12126900  Previous    Next  AGI:  At2g28355.1    Description:  LCR5 (Low-molecular-weight cysteine-rich 5). Identical to Low-molecular-weight cysteine-rich protein LCR5 precursor (LCR5) [Arabidopsis Thaliana] (GB:Q8S8H3;GB:P82720;GB:Q8LGD4); similar to LCR14 (Low-molecular-weight cysteine-rich 14) [Arabidopsis thaliana] (TAIR:AT2G25344.1); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); contains InterPro domain Knottin; (InterPro:IPR003614) Range:  from: 12126397    to: 12127356    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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