Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------AHL20(2)            --------->AHL20(2)        --------->AHL20(2)       <---------AHL20(2)    --------->AHL20(1)    <---------AHL20(1)  <---------AHL20(2)               ---------->DOF2 --------->AHL20(2)             --------->AHL20(2)                                   <---------ANAC58 ---------YAB1           ----------->GT1                                             <---------ANAC58 ----->AHL20(1)      <---------AHL20(2)                                          <------MYB46(1) ------AHL20(2)      --------->AHL20(2)                                         --------->MYB59 ------AHL20(1)   --------->AHL20(2)         ---------->DOF2    --------->GLK1(2)<------MYB83 ----->AHL20(2)   <---------AHL20(2)   ----------->GT1     <---------TOE2(3)--------->MYB52(2)     --   ttattatatattatttatattaaaaaaatgaaaaataaaaagagttataaagtttgtgtttgagataatctctctggtttgtttggttcttgtttctgta  12121000                                                            <---------YAB1                                      <---------YAB1    <---------MYB59                                    <-----------GT1   ------->TEIL                                 <---------AHL20(2)   --------->SPL7             <----------ID1      <---------ICU4     <---------SPL7             ----------->GT1    <---------AHL20(2) <---------ANAC58         ---------->DOF2        --------->AHL20(2) <---------ANAC58                                 <    <---------YAB1           <---------AHL20(2)   --------------->AtSPL8                           <-  <---------ICU4        <---------ARR11(3)        --------------->AtSPL3                           -- ------->ANAC46         --------->ARR11(3) --------->ARR11(3)       <---------CCA1(2)     <<<<<<<<<TBF1   tacatcattactaaagagaaaaacaagatgtttatttattacgatggtcttgtccgtacctgattatagcatctctctctatctctctcttcttcttcta  12121100              ---------->DOF2 --------->ZAT14 ------>ZmHOX2a(2)      <-----------GT1      <----------DOF2        ---------->DOF2        ------>ZmHOX2a(1) ------ZmHOX2a(2)      <-----------GT1 <-----------GT1            <---------YAB1 <-----------GT1 --------ARR14(2)  <---------DAG2    --------->YAB1             --------->YAB1 <----------DOF2 ------->ARR14(2)  <----------DOF2  <---------YAB1            <---------ARR11(3)<---------ZAT14   cgatctgatcagccattaaagctttttcccccttcactattatacctcttttgaagtgaaacaaaatcataaaagtcgaaactttactgtttcctctgca  12121200                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                   <---------MYB52(1)                                                           --------->LBD16                                                         ----------->RAV1(2)                                            <----------DOF2----------->HVH21                                            <---------DAG2--------->LBD16<---------CCA1(2) <---------AHL20(2)              <----------DOF2         <---------LBD16 ---------->ID1       <xxxxxx   aatttaaactctaatctctctctctctctctatctctttcacttcgctttctctatttcccctgaaaccgttcttgtctctctctctctctctctctctc  12121300                  <---------ARR11(3)                            <----------DOF2                  --------->ARR11(3)                           --------------->AGL15                --------->ANAC58                              ----------------->AGL1                --------->ANAC58                           <----------DOF2           --------->ANAC58                               ------>ZmHOX2a(2)          <-------GAMYB           --------->ANAC58       <---------ANAC58      <---------ARR11(3)       <---------LBD16      --------->At4g35610         <---------ANAC58      --------->ARR11(3)   --------->GLK1(2)      <---------At4g35610         <---------ANAC46  <------------CBF    ---------->DOF2 xxxxxxxxxxxxxxsmallRNA(se3)<-------TEIL       ---------->DOF2----------------->AG  <---------MYB46(3)   ttcttctctgctcaagacaagaacttgatgttcatgtcttgaaacttaacaaagtattgatctttccttttaagtaaagaatttgggggttacacaactt  12121400                                                       <------ZmHOX2a(2)                                        <---------ANAC58                            ------>ZmHOX2a(2)         <---------ARR11(3)                            ================================HOX2a_HOX2a                           =================================HOX2a_HOX2a                           <------ZmHOX2a(2)         <------ZmHOX2a(1)   --------->ZAT14                 ---------->DOF2        <---------ANAC58   <---------ATHB12 <---------HSFB2a(2)      <---------ARR14(2)<---------ANAC58             <---------ZAT14      <------ --------->HSFB2a(2)      --------->ARR14(2)<---------ANAC58<---------MYB46(3)      --------->MYB52(1)   cgtctagatggagcaagagaaaagcttggatccacaactatggcatgcttgtgcaggatcaatggttcaaatcccttcactgaattcaacggttttttac  12121500                               <---------ALFIN1                               --------->DEAR3(1)                              <------NtERF2                              --------->ATERF1(1)  <---------ANAC46                              --------->DEAR4(2)  --------->LBD16                             <---------ATERF1(1)  ------>NtERF2                            --------->ANAC58      <------NtERF2                          --------->TGA1a        --------->DEAR3(1)                   <---------ANAC46                          --------->ANAC58      --------->ATERF1(1)               --------->ATERF1(1)                          --------->ANAC46      --------->DEAR4(2)              <---------ANAC58                          <---------TGA1a       <---------DEAR3(1)              <---------ANAC58                    --------->ANAC58            <------NtERF2                   <---------ANAC46                    --------->ANAC58           ------>NtERF2                  <-----------HVH21                   --------->ZAT18             <---------ATERF1(1)         <---------bZIP60(2)                   <---------ZAT18   <---------GLK1(2)                     <---------ANAC58         -                 --------->ZAT14   ------>ZmHOX2a(1)                       <---------TGA1a        ---                 <---------ZAT18 ----------->RAV1(2)                       <---------O2 <---------MYB52(1)                 <---------ZAT14------>NtERF2 --------->ANAC46             <---------ANAC46      ----             --------->ANAC46------>NtERF2  --------->ANAC58             <-----------HVH21   <-------           <---------ALFIN1 --------->ANAC46--------->ANAC46            <-----------RAV1(1)  --------      --------->ANAC46    --------->ANAC58<-----------GT1 <---------ALFIN1 <---------ANAC58---------- -----GT1----------->RAV1(1)--------->ANAC58--------->ANAC58          ------>ZmHOX2a(1)--------->LBD16   ttcgctcaaggccacacagagcacgctcacgcgcctcctgattttcacgcgccgcgcgttccacctcttatcctctgtcgtgtcgtctccgtgaagttcc  12121600                                                                                 <------NtERF2     --------->At4g35610                            --------->LBD16  <---------HSFB2a(2)   <------NtERF2                                    <---------HSFB2a(2)        --------->DEAR3(1)  ------>NtERF2                                     --------->HSFB2a(2)        <---------DEAR3(1)  <---------ATERF1(1)                              <---------ANAC46  --------->HSFB2a(2) --------->DEAR3(1)                                <---------LBD16   --------->HSFC1(1) <---------DEAR3(1)                                <---------HSFB2a(2)         --------->ANAC46 --------->At1g77200                               --------->HSFB2a(2)        xxxxxxxxxxxxxxxx>smallRNA(s) ----------->HVH21                           --------------->AGL15  ------>ZmHOX2a(2) -------->DEAR3(2)                           <---------------AGL15--------->ARR14(2) ------>ANAC46                              ----------------->AG  <---------ARR14(2) -->ZmHOX2a(1)                              ----------------->AGL1--------->ARR11(3) --ARR14(2)                                 <-----------------AGL1<---------AGP1------>NtERF2       - ->ARR14(2)                            <----------DOF2       <---------ANAC46xxxxxxxxxxxxxxxx>smallRNA(s) ->ARR10                          <-----------GT1 <---------LBD16<---------CCA1(2)  <---------MYB52(1)   tcgccgacgctgaaacagacgaagtttttgctaaaattacgcttttgccacttccgggaaacgacttggatctagaaaacgacgccgttttgggtctaac  12121700                                                                                          -----------                                                                                        --------->MYB55(2)                         ------->GAMYB                                                 --------->ALFIN1                      <---------DOF5.7(2)                                              <---------AtMYB61                      --------->MYB52(1)                                              <-------GAMYB                    --------->At5g28300                                             <---------DREB2C(2)                   ------->GAMYB                                                    <---------DEAR3(1)                <---------DOF5.7(2)                                     --------->ANAC58<---------MYB46(3)                --------->MYB52(1)   --------->DEAR3(2)                 --------->ANAC58--------->ABI4(2)              --------->DOF5.7(2)   --------->MYB52(1)               ----------->HVH21<------NtERF2              --------->At5g28300  --------->ARR14(2)                ----------->TGA1<---------MYB46(3)         ----------->TGA1----------->GT1                      --------->ANAC46      --------->ALFIN1         ----------->HVH21         <---------ARR14(2)       <---------DOF5.7(2)    <---------ABI4(1)       <---------At4g35610  ---------->DOF2<------NtERF2  --------->DOF5.7(2)     ------->GAMYB       --------->At4g35610--------->At5g28300<----------DOF2---------->DOF2     <---------At5g28300   ------>ZmHOX2a(1)--------->DOF5.7(2)   ------>NtERF2  --------->TOE2(3)     --------->MYB52(1)  -- ----->ZmHOX2a(1)<-----------------AGL1  <---------ANAC46--------->TOE1(3)     <---------ICU4<-------   tcctccttcttctgacggtaacggtaacggtaaagagaaaccggcgtctttcgctaaaacgttaacgcagtctgacgctaataacggcggtggtttctcc  12121800                                                      <------NtERF2                                                     --------->MYB52(1)                                                     ------>NtERF2                                                   <---------ABI4(2)                                    --------->ATHB12<---------ALFIN1                                 <---------ANAC58  --------->ATERF1(1)                                 <---------ANAC58  --------->MYB46(3)                                 <---------ANAC46 <---------ATERF1(1)                              <---------DEAR3(1)  ------>NtERF2                             <---------LBD16     --------->ARR14(2)               ------>NtERF2 --------->LBD16     <---------ARR14(2)              --------->DEAR3(1)<------NtERF2    --------->PCF2            <---------RAP2.3(1)------>NtERF2    --------->ATERF1(1)            ------>NtERF2   --------->ANAC46    <------NtERF2   --------->ANAC58       >>>>>>>>>>E2Fc        --------->RAP2.3(1)   --------->ANAC58       >>>>>>>>>>E2Fd       <---------RAP2.3(1)   --------->ANAC46       >>>>>>>>>>E2Fb       <---------ATERF1(1)                    --------->ANAC46   --------->bZIP60(2)    >>>>>>>>>>E2Fe      <---------DEAR3(1)                      <---------DEAR3(1) <---------ALFIN1         >>>>>>>>>>E2Fa     <---------LBD16               ---------->DOF2 ------------>TaNAC69(2)<XXXXXXXXXXXXXXXXXXXXMIR171A--------->DEAR3(1)<---------WOX13(1) ------->SPL7<------NtERF2>>>>>>>>>>E2Ff     <------NtERF2          --------->ATHB12 <---------LBD16 ----GT1   <---------ANAC46<---------LBD16 <---------DEAR3(1)      <---------YAB1   <---------ALFIN1<   gttccacgttattgcgccgagacgattttcccgcggcttgattactcggcggagccaccggttcaaaccgtgattgctaaagacatccacggcgagactt  12121900  Previous    Next  AGI:  At2g28350.1    Description:  ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor. Identical to Auxin response factor 10 (ARF10) [Arabidopsis Thaliana] (GB:Q9SKN5;GB:Q9SQ86); similar to ARF16 (AUXIN RESPONSE FACTOR 16), miRNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G30080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68941.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21854.1); similar to auxin response factor 3 [Gossypium hirsutum] (GB:ABO60876.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA-ARF-dimerisation; (InterPro:IPR011525); con Range:  from: 12121408    to: 12123925    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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