Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ANAC46               --------->HSFB2a(2)                                                     <-----------GT1                <---------HSFB2a(2)                                         <---------YAB1              <---------WRKY12      ----------                                     <---------GLK1(2)       ---------->DOF2      -------->P -----DOF2     --------------->AGL15--------->At4g35610 ----------->RAV1(1)   --------->GLK1(2) ----DAG2      <---------------AGL15<---------At4g35610--------->MYB46(3)    <---------GLK1(2)   tttgagttgtttctccactataaatagtatatgtcttcagcttcttataagttataaaccacagaaagaagtcaactaagaatctaccagaaaaaaagga  12021200                                                                                    --------->AtLEC2                                                                                  <---------ANAC58    <---------AHL20(2)                       <-----------HVH21          <---------HSFB2a(2)    --------->AHL20(2)     <---------YAB1  <---------AtMYB61 <------ZmHOX2a(1)    <---------ANAC58  <----------DOF2    <----------DOF2     <----------DOF2  --------->CCA1(2)      <-------TEIL >DOF2     --------->At4g35610  --------->YAB1     --------->ANAC46     --------->HSFB2a(2)     -----   atttctttaaataagatgactgtctttctatgaatgaaaacagctttggtcacacataagataggaaactatttctagatagtttcatgccaagtttgtc  12021300                             <---------TOE2(3)              <---------AHL20(2)              --------->AHL20(2)              --------->ARR11(3)              <---------AHL20(1)                                                          ---------->DOF2              --------->AHL20(1)                                                        --------->YAB1              <---------ARR11(3)              --------->YAB1     --------->AHL20(2)    <---------ATHB12     ----------->GT1        <-----------GT1 --------->ARR11(3)   <---------AHL20(2)  --------->WOX13(1) ---->ZAT6   --------->AHL20(2)             <---------ARR11(3) <---------AHL20(2)<-----------GT1    <   actaaattggtcaaaatatattggcaagtttaacattttcgcataagataataacatatacttatatttttttaagaactaatttgccaatcaaaagtag  12021400                                      --------->WOX13(1)                                     <---------AHL20(2)              ---------->DOF2        --------->AHL20(2)               ----------->GT1              --        ----------->GT1     ----------->GT1                   ----------->GT1     --------->ANAC58 --  --------->DAG2            --------->ALFIN1            ---------->DOF2           --------->ANAC58 <- ---------->DOF2         --------->DAG2                ------>ZmHOX2a(1) ---------->DOF2          --- ---------ATHB12        ---------->DOF2  --------->YAB1<---------------AGL15  -----------------------   caataaagtgaagaaaaaaagtctaataaagtgtagaaattaatcaaattttaagtcctaaagttggaaaaatggtaaagaagcactcaaaaaaaaaaaa  12021500               ----------->TCP11(1)             --------->ALFIN1           <-----------RAV1(1)                     --------->TOE2(3)        ------->TEIL                            <-----------GT1     <---------ANAC46                        --------->YAB1 <------------CBF                            --------->AHL20(2)         --------->ANAC58 ------->AHL20(1)    <---------ARR14(2)     <---------ATHB12        --------->ANAC58 ------->AHL20(2)    --------->ARR14(2)     ----------->TBP         --------->ANAC46 --------AHL20(2)  <------NtERF2        ------------>CBF            --------->ANAC58 ------>AHL20(2)<---------PCF2        <---------bZIP60(1)  ------------>CBF*TSS                ------ ->ANAC81  --------->ALFIN1        ----------->HVH21     <----------DOF2--------->ANAC58<---------ICU4   aaaaattgtgtatgtgtgggccgaatttgagaaaccagtgacaccaataaaaacctcatctttcaatctcacacaagtatttgtgcctactcatttcctc  12021600                                 ----------->RAV1(1)               --------->ZAT2   --------->AtMYB61               <---------ZAT2   --------->MYB46(3)               --------->At4g35610------>MYB46(1)        --------->YAB1         <---------MYB52(2)  --------->TOE2(3)            --------->MYB46(3)  <-----------HVH21           ------>NtERF2                                              <---------ATHB12 --------->ANAC58          <---------ATERF1(1)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ------>ZmHOX2a(1) --------->ANAC58          ------>NtERF2   ------>ZmHOX2a(1)          <---------YAB1------>ZmHOX2a(1) --------->ANAC46--------->RAP2.6(2)   --------->ARR14(2)  ------>ZmHOX2a(1)    ------>ZmHOX2a(1) >ZmHOX2a(1)   <---------At4g35610------>MYB83        <---------At4g35610    ------>ZmHOX2a(1)   caaacgtcaaacatagcagcagccatggctgccaccaacacaatcctcgcattctcatctccttctcgtcttctcattcctccttcctccaatccttcaa  12021700                     <------NtERF2                     <---------CCA1(2)                    ------>NtERF2                   --------->DEAR3(1)                   <---------DEAR3(1)                   <---------ANAC46                   <---------ANAC58                   <---------ANAC58                  ------>NtERF2                  --------->RAP2.3(1)                  --------->ATERF1(1)                  <------NtERF2                 <---------ATERF1(1)                 ------>NtERF2                <---------DEAR3(1)                --------->ANAC46               <---------LBD16               --------->LBD16                                                    --------->LBD16               --------->At4g35610                                               <---------ANAC46  <-               <---------At4g35610                                        <---------DOF5.7(2)     <--             <---------LBD16                                              ---------->DOF2     -------          <----------DOF2                                               <---------MYB52(1)   --------        ------>ZmHOX2a(1)                      --------->DEAR3(1)       --------->DOF5.7(2)  --------    <---------MYB52(1)                      <---------ALFIN1           --------->At5g28300   --------    --------->ARR14(2)         --------->MYB46(3)                      <-------GAMYB  ---------->DOF2   ctctccgttcctctttccgcggcgtctctctcaacaacaacaatctccaccgtctccaatctgtttccttcgccgttaaagctccgtcgaaagcgttgac  12021800          ------>NtERF2         ------>NtERF2        <---------DEAR3(1)       --------->LBD16       --------->At4g35610       <---------At4g35610       <---------LBD16     <---------LBD16   --------->ARR14(2) --------->At4g35610                           --------->WRKY45 --------MYB52(1)     <-------GAMYB                                 --------->WRKY38(1) -----GAMYB<---------ANAC46         <---------TOE2(3)               --------->WRKY12       <---------CCA1(2) ----->AtMYB77       <---------MYB46(3)                           <----------DOF2       <-------TEIL ->WRKY12--------->LBD16          ---------->DOF2           <---------MYB46(3)        --------->ARR14(2) --->HVH21<------NtERF2         <----------DOF2             ----------->GT1           <---------ARR14(2) ->WRKY38(1)         <-----------RAV1(1)<-------TEIL    <------ZmHOX2a(1)          <-----------RAV1(2)   agttgtttccgcggcgaagaaggctgttgcagtgcttaaaggtacttctgatgtcgaaggagttgttactttgacccaagatgactcaggtccgtctctc  12021900                                                                                                  <--                                                                                            ---------                                                                                            <--------                                                                                           ------->TEIL                         ----------->RAV1(2)                    <---------ZAT18            <---------ARR11(1)                         <---------At4g35610                  <------MYB83                 <---------ARR14(2)                         --------->At4g35610             --------->ATHB12                  <---------          <---------ARR11(3)               --------->ATHB12   <------MYB46(1)              --------->ARR14(2)          --------->ARR11(3)             <---------WOX13(1)  --------->MYB59              <---------CCA1(2)          --------->GLK1(2)           <---------YAB1    --------->ICU4              --------->At4g35610         <---------GLK1(2)     <---------GLK1(1)        <---------YAB1    <---------ZAT6  <---------ARR14(1)   tcaattgctcaaaatctctaatttctcatctgggtttctgaagattgatttgatgggcatgattaggtcactctcagtgttcaatctgcttcgtatctga  12022000     <---------ARR11(3)     <---------ARR14(3)     --------->ARR14(3)     <---------ARR14(2)     --------->ARR14(2)                               <-----------GT1     --------->ARR11(3)                       --------->ARR14(2) --------DOF2                                 <---------ARR14(2) >At4g35610            <----------DOF2       <---------CCA1(2)    ---------->DOF2       <---------AHL20(2) -At4g35610            <---------DAG2  --------->At4g35610 <---------MYB52(1) <---------DAG2      --- --ARR10   ---------->DOF2       <---------AHL20(2) <----------DOF2           <----------DOF2  <-----   ctttcaatatcttcaaagtctcagactttttctgtttaatctgcttcatatctgattttcggtttcttcaaagtttcagactttttctgtttaatctgtt  12022100  Previous    Next  AGI:  At2g28190.1    Description:  CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); copper, zinc superoxide dismutase. Identical to Superoxide dismutase [Cu-Zn], chloroplast precursor (SODCP) [Arabidopsis Thaliana] (GB:O78310;GB:Q541D5;GB:Q9SUJ8); similar to CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) [Arabidopsis thaliana] (TAIR:AT1G08830.2); similar to CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT1G08830.1); similar to chloroplast Cu/ZnSOD [Gossypium hirsutum] (GB:ABA00454.1); similar to chloroplast Cu/Zn superoxide dismutase [Gossypium hirsutum] (GB:AAZ41971.1); contains InterPro domain Superoxide dismutase, copper/zin Range:  from: 12021575    to: 12023646    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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