Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->O2                                                               <--                       <---------TGA1a                                                            <--                       --------->TGA1a                                                            ---                   <-----------TGA1                                                       --------->ARR11(3)               <---------TGA1a                                                            <---------ARR11(3)    <------MYB46(1)<-----------HVH21                                                      --------->ARR14(2)    <------MYB83  <---------bZIP60(1)                                                     <---------ARR14(2)    <---------MYB46(3) <---------ANAC55(2)                                                <---------AGP1   --------->MYB59--------->bZIP60(1)                                                     <----------   <---------AtMYB61   <---------O2                        --------->GLK1(2)             <---------CCA1(2) ---->DOF2     <---------O2                               --------->ARR14(2)   <----------DOF2<------ >ANAC58       --------->O2   --------->At4g35610         <---------GLK1(2)<---------ANAC58 ========= >ANAC58       --------->TGA1a<---------At4g35610       ----------->ARR10  <---------ANAC58 ------>ZmHOX2a(2)   agggtttggttagagagacgtcgtcacttgagagctctctcactcttgctaccaagaagagattctccagtctctgtgcgtctttctctgtggatcttac  11963100          --------->LBD16       <------ZmHOX2a(2)       --------->CCA1(2)      --------->AGP1      --------->ARR14(2)      <---------ARR14(2)      --------->ARR11(3)     --------->At4g35610                                                                        <---- -------ZAT14              <---------CCA1(2)                                                    ----- -------ZAT18         ------>ZmHOX2a(1)                                                         ----- ------>ZAT14    ---------->ID1          <---------ICU4                            --------->MYB52(2) -ARR10======================HOX2a_HOX2a --------->YAB1            ------>ZmHOX2a(1)    <---------ANAC46 -----GT1<-----------RAV1(2)          --------->YAB1             ----------->RAV1(2)   --------->At4g35610 ============================HOX2a_HOX2a<---------YAB1    <-----------ARR10     <---------MYB52(1)   ttcactcagatccaggtttgtctccttctctatcttgttctcatcataactcgaactgagtctcttctcctgcttagtcttcgtttagttgctgagaaaa  11963200                                                                                             <------ZmHOX2a(1)                                                                                           --------->MYB59                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                     <---------------AGL15                                          --------->ARR14(2)                         --------------->AGL15                                          <---------ARR14(2)                        <---------ANAC55(2)                                   --------->YAB1                                   <----------------                                   <--------ATHB1         <---------TOE1(3)         <----------------    ------->TEIL                   ---------->DOF2        <---------TOE2(3)         <---------------- -----ARR11(3)                    <---------ATHB51  --------->DAG2                  --------->ANAC55(2) ---->ARR11(3)                    <---------ATHB12 ---------->DOF2  --------->ATHB12================= ---->GLK1(2)<-----------GT1  ------------>CBF----------->GT1      <---------YAB1 <-----------GT1   tctatgaacttgaagttactctgtttcagtgtctcaataatgcagaaactgaaaaaagttagggtttttatgatttatactaagttacttaattaggaat  11963300                                           --------->DAG2                       <---------------AGL15                                     --------->HSFB2a(2)          <---------ZAT14 ----------->TBP                                     <---------HSFB2a(2)<---------AHL20(2)     ----------------->AGL3                                <---------At4g35610    --------->AHL20(2)      <-----------------AGL3                    --------->At5g28300   ---------->DOF2        <----------DOF2--------------->AGL15 -AG--------->ZAT6 ----------->GT1<----------DOF2  <---------ARR11(3)          ----------------->AGL2 -AGL1         --------->ZAT14--------->ZAT18      <---------GLK1(2)           <-----------------AGL2 -AGL3         <---------ZAT14<---------ZAT18      --------->ARR11(3)        ------>ZmHOX2a(1) ===============================================================================================MADS_MADS   cacttctcactagtcactaaactgtaatttagtgagcttttggaaaaagtttagatttttaatagtgcttcactgattcctactatatatagtagtctct  11963400                               <---------YAB1                             --------->YAB1                     <---------ANAC58                     <---------ANAC58                     <-------GAMYB<---------TOE2(3)  ----------->GT1          <----------DOF2   --------->ICU4         <------------CBF          <---------DAG2  <------------CBF       <---------AHL20(2)         <----------DOF2 <---------AtLEC2        --------->AHL20(2)   <------------CBF <---------MYB46(3)           <---------AHL20(1)                                 -  --------->ATHB12 <---------AtMYB61             --------->AHL20(1)    <----------DOF2           <---   tcacttattggcctttttgttttggttgcattgattatggaatctaaacattttattgtaaaatttgtagtttctttggaacattttgtgttcttgaggt  11963500                <-------TEIL              <---------ARR14(2)           <------ZmHOX2a(1)                           <---------HSFB2a(2)      --------->ALFIN1                               <---------At4g35610    <------ZmHOX2a(1)                    --------->SPL7--------->HSFB2a(2)                  <-------- --------->DOF2--------->CCA1(2)        <---------MYB52(1)         ------>ZmHOX2a(1)     <-----------GT1 --------HVH21--------->ARR14(2)   <-----------GT1   --------->At4g35610    <---------ZAT6  <--------   gtcaaaggatggaggagatacagtctcaatcggatttataccgttcgtcttcgtcttctgcaagtagtcctactagtagagttccatctagtcacttttt  11963600                                                                   ----------->RAV1(2)                                                                   <---------At4g35610                                    <----------DOF2              <---------ALFIN1                                 <---------ARR11(3)         --------->ANAC58                     <---                                 --------->ARR11(3)         --------->ANAC58                     <---                       --------->HSFB2a(2)         ------>ZmHOX2a(1)                            -----           --------------------->WRI1            ----------->RAV1(2) ----------->HVH21       <------- --DOF2   ----------->RAV1(2)   <---------CCA1(2)<-----------------AGL1                    --------->At4g35610 -DAG2   --------->GLK1(2)   --------->TOE2(3)   ----------------->AGL1           <---------TOE2(3)--   ctatgtaagaaaacctggttctcttcgacaacctatatcttttgaagactctcctgaatgggaagacacacctgatgttgatttaagaatggaagatgaa  11963700      <---------MYB46(3)     <---------AtMYB61     --------->ALFIN1                                                          <---------ANAC58     <---------ANAC46                                                   ========================HOX2a_HOX2a   <---------MYB46(3)                                                   =====================HOX2a_HOX2a  <---------AtMYB61         --------->REM1(1)                           <------ZmHOX2a(2)------>ZmHOX2a(1)  --------->ALFIN1     --------->ANAC58                                 ============================= ------ZAT2            --------->ANAC58               <---------HSFB2a(2)      <---------ANAC58     < ------At4g35610    ----------->TGA1           ================================HOX2a_HOX2a     ------ -->TEIL          <---------ICU4               ------>ZmHOX2a(1)        ============================= --REM1(1)        --------->YAB1    ----------->RAV1(2)           --------->MYB52(1)   ----------->RAV1(2) ------->ALFIN1 <---------YAB1 --------->MYB46(3)--------->MYB52(2)<---------LBD16    ------>ZmHOX2a(1)   gctggtggtggtgattctattaatgacgctacaacaacgcctgtttctccttcgttgtcgaagatgaatagcggatcaatggcttctcctcctgttcctg  11963800         ----------->HVH21     <---------ZAT2     --------->At4g35610     <---------At4g35610     --------->ZAT2                             <---------AtLEC2                        --------->AHL20(1)    <---------ARR14(2)                          <---------ANAC46                        <---------ARR11(3)    --------->ARR14(2)                          <---------ANAC58      --------------->AGL15        <-   <------ZmHOX2a(1)              <-----------RAV1(1)     --------->CCA1(2)             <---------AHL20(1) --------->ALFIN1                <---------ANAC58        --------->ARR11(1)        ----------->GT1 <- =HOX2a_HOX2a                    <---------ANAC58        <---------ARR11(3)      ----------->GT1   -- ------ZmHOX2a(1)                <---------ANAC46      ----------->ARR10<---------YAB1  --------->ARR11(3) >ZmHOX2a(1)                --------->ATHB12    <---------ANAC58      <---------------AGL15--------->GLK1(2) ======HOX2a_HOX2a <---------MYB46(3)          --------->ATHB12  <-------GAMYB ---------->DOF2<------   aaggaggagctgggactggtgttgttagaaagattgctggtgcttctattgcttggaaagatttgactgttactatgaagggaaagagaaaatattctga  11963900                                         <---------YAB1                                  --------->LBD16             ----------------->AGL1                                 <---------LBD16   <---------ICU4     --------->HSFB2a(2)                                 --------->HSFB2a(2)        --------->AtLEC2                                 --------->ANAC46  --------->ATHB12   --------->LBD16                                 --------->LBD16   -------->HAHB4    <---------LBD16      ---------->DOF2           <---------LBD16   <---------YAB1    <---------LBD16               <--   ----------->GT1           <---------ARR14(2)   --------->ICU4  --------->ARR14(2)              <-- --------TOE2(3)             --------->ARR14(2)   <---------ATHB51--------->GLK1(2)               <-- --------TOE1(3)          <---------ANAC58    --------->At5g28300 <---------ARR14(2)       --------->ZAT18 ------->DAG2             <---------ANAC58   ----------->GT1------>ZmHOX2a(1)              <---------ZAT18 ---YAB1            ----------------------->TaNAC69(2)  <---------PCF2<---------HSFB2a(2)<---------RAP2.3(3)   taaggttgtaaagagttcgaatggttatgcgtttcccgggactatgactgtaattatgggtcctgcaaaatccgggaagtctactctattgagggctctt  11964000  Previous    Next  AGI:  At2g28070.1    Description:  ABC transporter family protein. Identical to White-brown complex homolog protein 3 (WBC3) [Arabidopsis Thaliana] (GB:Q9ZUU9); similar to ABCG11/COF1/DSO/WBC11 (DESPERADO), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G17840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16784.1); similar to hypothetical protein OsI_013906 [Oryza sativa (indica cultivar-group)] (GB:EAY92673.1); similar to ABC transporter family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG00010.1); contains InterPro domain ABC-2 type transporter (InterPro:IPR013525); contains InterPro do Range:  from: 11963509    to: 11966859    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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