Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                            <--------                                                                                            ---------                                                    --------->MYB46(3)                     <---------YAB1              --------->YAB1                   --------->TOE1(3)                         <---------ICU4              --------->TOE1(3)                --------->TOE2(3)                      --------->TOE1(3)              --------->TOE2(3)       --------->ANAC46              >>>>>>>>>>>>>>>>>LFY --------->YAB1   <----------DOF2                 <---------ARR14(2)              <-----------GT1    --------->YAB1< >DOF2     --------->WOX13(1)      --------->ARR14(2)    --------->ZAT14              --------->TOE2(3)   caagtcttttcatcaatcttaacttcattgttcttcatatactcaaaaacctcaacaacttcactaaattttccattgtctgaataaaccataatcatcg  11946300               --------->MYB46(3)               <---------MYB111(2)          ------>MYB46(1)          ------>MYB83       <---------HSFB2a(1)       --------->HSFB2a(1)       --------->HSFC1(2)     <---------GLK1(2)                          --------->ANAC58     --------->ARR14(2)                --------->YAB1                        --------->TOE1(2) ---------->DOF2                 ------->GAMYB  --------->ANAC58            ----------->RAV1(2) -------->AHL20(2)               <---------ALFIN1                   ---------->DOF2 -ICU4 <---------HSFC1(2)       --------->MYB46(3)              <---------------AGL15 >YAB1------->TEIL           --------->MYB46(3) --------->ZAT6  --------------->AGL15              <- ---------AHL20(2) <----------DOF2    <-------TEIL              --------->TOE2(3)        <---------YAB1   aattaaagaacctcccaacaactttcttctcacaaccacattcatcaataacgctagagacgattacattaaaagggtacctgagaatgtcatcaatagc  11946400                                                    =======================bZIP_DOF                                                 --------->ANAC55(1)                                            --------->ANAC46                                            --------->ANAC58                                            --------->ANAC58     ============================MYC_MYB                                        ------>NtERF2--------->DAG2                                       --------->ANAC46          ====================================                             <---------ARR14(2)  --------->ANAC58<---------TGA1a                             --------->GLK1(2)   <---------ANAC55(2)                      -----------                             --------->ARR14(2)  --------->ANAC46--------->TGA1a      <------MYB83                             <-----------ARR10   --------->ANAC58<---------O2         <------MYB46(1)               <----------DOF2         <---------ETT(1)      --------->CCA1(2)      <--------P ------            --------->ARR11(3)         ----------->HVH21    <----------ARF1     <-----------RAV1(2)            <---------ARR11(3)     ------>ZmHOX2a(1)---------->DOF2            <------ZmHOX2a(2) ----------RAV1(2)          <---------GLK1(2)   <---------LBD16  --------->O2 --------->ARR11(3)    -   cacaggcttcaagagttctttcgcatatgagaatctcctctccgacaagacacggaaagtgagagacaagtgagttctgagatcaggttggaatgagaaa  11946500                                              <---------ARR14(2)                                              --------->ARR14(2)                                             <------ZmHOX2a(1)                                           --------->LBD16                                     ------->TEIL                                   <-------TEIL        <---------LBD16                                --------->At4g35610  <---------ARR14(2)                                <---------At4g35610  --------->ARR11(3) =====bZIP_DOF<------ZmHOX2a(1) --------->GLK1(1)   <---------GLK1(1)                            ---- >GT1       --------->LBD16--------->DAG2 --------->HSFB2a(2)                      <---------ZAT14 ---->DOF2 <---------LBD16--------->DAG2  <---------LBD16         --------->AHL20(2)            <---- -------->CCA1(2)        ---------->DOF2  <---------HSFB2a(2)  ----------->GT1    --------->ALFIN1   agagatgggttctccaggatgaaattgaaaagggagatgcatttccaggatttgatatctgggtctgataaaatacggcgaagagtggagagattgagat  11946600                   --------->ANAC58                   --------->ANAC58            <---------LBD16                               <---------ANAC58          <---------ARR14(2)                             <---------HSFC1(2)          --------->ARR14(2)  <------MYB46(1)            --------->HSFC1(2)    <---------AtMYB61         <------MYB83              --------->GLK1(2)    --------->ALFIN1          ----------->GT1       <------ZmHOX2a(1) -->ZmHOX2a(2)   ---------->DOF2         <------ZmHOX2a(1)<---------ANAC58               --------->At4g35610 --ZmHOX2a(2) --------->LBD16--------->MYB59      <---------TOE2(3)  <---------TOE2(3)   <---------At4g35610   cggagagtggtgtttccggtgaagcaagagtttggtttatagaggaagaattgaggagaagcttgtagattgagaatgtataagtttgtttagctgtctt  11946700                                               <----------DOF2                                             <------NtERF2                                            <---------RAP2.3(1)                                            ------>NtERF2                                           <---------RAP2.3(2)                                           <---------DEAR3(1)                                           <---------RAP2.6(2)                                          <------NtERF2                                          --------->ATERF1(1)                                          <---------At4g35610                                         <---------ORA47(2)                                         <---------DEAR3(2)                                         <---------RRTF1(1)                                         <---------RAP2.3(1)                                         <---------ERF1                                         <---------ATERF1(1)                                         ------>NtERF2                                        <---------At1g77200                                        <---------RAP2.3(3)                                        <---------DEAR3(1)                  --------->ARR14(2)                                        <---------DREB2C(2)              --------->YAB1          <---                                      <-----------HVH21                 <---------At4g35610      ----                              --------->ARR14(2)                        --------->At4g35610      <---                              <---------ARR14(2)             <---------ALFIN1                   -----                   --------->LBD16   --------->TGA1a         --------->AtMYB61              ---------                  <---------ANAC58   --------->O2           --------->MYB46(3)  ----------->GT1 <----                  <---------ANAC58   <---------O2         --------->ANAC46  <---------ARR14(2) ------                  <---------ANAC46   <---------TGA1a <---------ZAT18 <-------TEIL          --------->DEAR3(2)                 <---------LBD16     =====================bZIP_DOF  <---------MYB52(1)   <-----------GT1   cagggttttcaagaagcattgcggagtcatcgaatcgtctcgtcggcggctttggctcactcaccactccgttcatcagaactggaaatttgaaccggcc  11946800    --------->DAG2   ---------->DOF2                          --------->ATHB12 ---NtERF2                                 --------->ICU4 ----->At4g35610           <---------------AGL15                                  <---------AHL20(2) ------At4g35610           --------------->AGL15                                 <---------AHL20(2) ---->RAP2.6(2)     <------MYB46(1)        <---------YAB1                        --------->AHL20(2) >DEAR3(1)    <---------ARR11(3)      --------->ANAC58                       <---------AHL20(2) -----ATERF1(1)     <------MYB83      --------->ANAC58 <-----------GT1       <---------AHL20(1) --->SPL7     --------->ARR11(3)     --------->RAP2.6(3)                     --------->AHL20(2)   gctacaaaagtggcaagatgttcggttttctaatatgagaacggcatgatttgtttatcaccttcatgtctccgaacattttatttattatctaagttat  11946900                                                                      --------->AtLEC2                                                                 ------>ZmHOX2a(2)                                   ------------>CBF             <------ZmHOX2a(2)                                  --------->ANAC58              <---------GLK1(1)                                  --------->ANAC58              --------->GLK1(1)                                  --------->ANAC46             --------->ARR11(3)                              --------->YAB1                   --------->ARR14(2)                             <---------YAB1                    <---------ARR11(3)                            <-----------TBP                    --------->ARR14(3)               <----     --------->YAB1      <---------ANAC58                      <---------ARR14(2)            <-------TEIL    <---------YAB1       <---------ANAC58                     <---------GLK1(1)  <------------CBF   <-----------TBP       <---------ANAC46        ------->TEIL --------->GLK1(1)--------->ARR11(3)   -   aggcttattatagcttaagaaaaaatggcttattataggcaatctcatatggacctcttggaagagatctccatgtacaaagacattgttcgacatacat  11947000             <---------ATHB12            ------>MYB83            ------>MYB46(1)            <---------------AGL15           --------->WOX13(1)         ----------------->AGL2    ------->TEIL         ------------>CBF         <--------ATHB1       <<<<<<<ZML2            <---------ALFIN1    --------->At4g35610           <---------ICU4    <---------HSFB2a(2)    <---------ICU4  ------>ZmHOX2a(2)            --------->YAB1       --------->HSFB2a(2)    --------->YAB1    <------- -----At4g35610            ---------->DOF2     <---------At4g35610      --------->YAB1       <------- -------->AGP1          <----------DOF2--------------->AGL15   <---------CCA1(2)         <-----------RAV1(1)   ctgatctactgaccaatcacttctcgctataaagaataattcccattttagctactagaacaaatgtatctccataatcaacacattcagtctgtcggtt  11947100                                                                        --------->ATHB12                                                                       <-------TEIL                                                                   <---------AHL20(1)                                                                   --------->AHL20(2)                                                                   <---------ARR11(3)                                                                   --------->ARR11(3)        <---------TGA1a                                            --------->AHL20(1)          <-----        --------->TGA1a                                         --------->AHL20(2)        <----------DOF2        <---------O2                                            --------->YAB1  --------->ANAC58        --------->O2     --------->ARR11(3)                    <---------YAB1   --------->ANAC58    < --DEAR3(2)              <---------ARR11(3)               <-----------GT1       --------->ANAC46  <-- --MYB46(3)             <---------CCA1(2)        <------ZmHOX2a(2) <---------AHL20(2)    <---------DAG2   tctgagtgccacgagtctgggtttgtatatctcactctatggttccatgagatcagtattttactataatatattcatttgcacacaattgccttttttt  11947200  Previous    Next  AGI:  At2g28050.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G32630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18184.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11945342    to: 11946730    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g28053.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.6e-06 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 11946930    to: 11947316    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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