Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   <-                                                                      <-----------GT1         -------                                                                  --------->ICU4             <-------                                    ----------->GT1       --------->ANAC58         ---------->DOF2 <-                           <---------YAB1                 --------->ANAC58        --------->LBD16  --      ----------->GT1  --------->SPL7                    <---------GLK1(1)       --------->HSFB2a(2) --------------AGL15 --------->TOE2(2)                  ---------->DOF2<-----------GT1     <---------YAB1 ------>TOE2(3)      --------->TOE1(2)                 <------ZmHOX2a(1)         <---------HSFB2a(2)   tcttaaacatgtaaatctcttagcctacgatgattcaagggttatacagcgaatagaggaaagccctaatttttaacttacttccgaaagaatacgattc  11920000                                   <-------MYC2                                   ------->MYC2                                   <-------MYC3                          <---------------AtSPL8    ---------->DOF2      <------ZmHOX2a(1) --------TOE2(3)     --------->LBD16 --------TOE1(2)    --------->HSFB2a(2)                      --------->ANAC58 -->GLK1(2)         <---------HSFB2a(2)                      --------->ANAC46 --GLK1(2)          <---------ANAC46                         --------->ANAC58                 ------- --------TOE2(2)   <---------LBD16 ------->MYC3      ---------->DOF2                --------->TOE1(2) ------->MYB59    --------->MYB52(1) ------->TEIL   --------->AHL20(2)             <---------ANAC55(2)   ttaggtaaaagcttagcaacttccggaggaagtacaacgtgcctgagagaaaaataaaagaccacgcgattagactgaaactaaaacgtgagagagaact  11920100                                                                              ----------->HVH21                                                                             ------>ZmHOX2a(2)                                                                            <---------At4g35610                                                                            --------->At4g35610                                                                           --------->ARR14(2)                                                                           <---------ARR11(3)                                                                           <---------AGP1                                                                           <---------ARR14(2)                                                                           <-----------ARR10       <-                                                                    <---------ZAT14                --                --------->GLK1(2)                                   --------->ZAT14               ---  <---------AHL20(2)                            <---------YAB1    <------NtERF2                   ---  --------->AHL20(2)            ----------->RAV1(2)             --------->ETT(1)                  --- -->GLK1(1) <------ZmHOX2a(1)   --------->At4g35610          <-----------RAV1(1)                <----   ccattaaaatgggaggagaatcaaactgagaatcacctgtattcgaaagtatcatcgaaatatttgtcggagtactggatctgacccatcttcttaaatc  11920200     --------->MYB52(1)    ------->GAMYB   --------->MYB46(3)   <---------MYB52(2)   <---------MYB55(2) ------>MYB46(1) ------>MYB83 ----------->RAV1(1)         ---------->DOF2 --------MYB55(2)   <-----------GT1                                              --------->TOE2(3) ------->MYB46(3)  --------->AHL20(2)                                   ------->GAMYB          ------ ------>ANAC58 --------->AHL20(2)                             --------->TOE2(3)  <---------MYB59 ------>ANAC46 <---------AHL20(2)                       --------->TOE2(3)        --------->TOE1(3) ------>ANAC58 <---------AHL20(1)              <-----------HVH21     --------->MYB52(1)    --------->YAB1 -------GT1   --------->AHL20(2)          --------->WOX13(1)  --------->TOE1(3)--------->GLK1(2)   acccaacaaacgtctattaaatttactaaacaaaagaaatggagcaatctgtcagtaatctaaaccctaaacaacgacgagaacctaaacaaatcagaaa  11920300                            <---------At4g35610           --------->ANAC58                          --------->DAG2                  --------->ANAC58                  <---------HSFB2a(2)                  <---------ARR14(2)                 <---------LBD16<---------ARR11(3)     --------->ARR14(2)               <---------ARR14(2)              <---------ZAT18               --------->GLK1(2)--------->ARR11(3)  ------>ZmHOX2a(2)   --------->TOE2(3)     ---------->DOF2       --------->ZAT18    ------->TEIL             ---------- --->GLK1(1)  <---------GLK1(2) <---------ARR14(2) <------ZmHOX2a(2)      *TSS       ---------->DOF2-   tcgaaccctaatctaagaatcgggaagtaaagcagaccttgagaagaagtgcgatcggaaacgaaatgaattttaggggagaagagggaaagcgaaaggg  11920400                            -------->HAHB4                            --------->ATHB12                            <---------ICU4                           --------->ICU4                        --------->AHL20(2)                      ----------->GT1                    <------ZmHOX2a(1)                <--------P <---------ATHB51             <---------TOE2(3) <---------LBD16   ---------->DOF2--------->ANAC58                                     <---------AHL20(2) >DOF2   <------------CBF  <---------YAB1                         <---------YAB1 -------->AHL20(2)--------->ANAC58  <-----------TBP    --------->MYB52(1)   aattaaaaaggcattgtggtaaggaagtaattatggggatttataggggcattttctcaacgggtgttttgatttttttgagtttcaaatttcttagagg  11920500                                                --------->WOX13(1)     <-----------HVH21            <                 <---------PCF2               <---------MYB52(1)     --------->LBD16                -                 --------->TCP20              --------->DOF5.7(2)   --------->LBD16                 -          <----------DOF2               --------->SPL7       <---------YAB1     <-------TEIL        <         <----------CDC5            <---------TOE2(3)    ----------->GT1<-------TEIL                <   ------>ZmHOX2a(1)          <---------YAB1 --------->TOE2(3)     <---------LBD16      ---------->DOF2   cgctccttcccgcttagtggagccctaaaattttgattacggttcgacgttaatcaaaccggtataattcccggttcagagattcatttctaaaggcatc  11920600                                           --------->LBD16                                          --------->ATERF1(2)                                          <---------ATERF1(2)                                          <---------DEAR3(1)                                         --------->DEAR4(2)                                         <---------LBD16                                         --------->ATERF1(1)                                        <---------ATERF1(1)                                       --------->ANAC46       ------>ZmHOX2a(1)          <---------ZAT14      <---------------AGL15       <---------ARR14(2)      --------------->AGL15       --------->ARR14(2)                                              <-- ---------ARR11(3)                --------->ZAT14                                                 --- -------->ARR14(2)         --------->ALFIN1------>NtERF2                                ---------->DOF2 -------->ARR11(3)       <---------At4g35610  <----------DOF2                     ----------->HVH21<- -----------ARR10        --------->At4g35610<------NtERF2  <----------DOF2   --------->TOE2(3)------- ---------ARR14(2)     <-----------RAV1(2)--------->DEAR3(1)            <---------AHL20(2)<----------ID1   agtatcttcctcttatagtcagagttcaggtgtccgtatactcgccggctttgtatacctcctttgttcgatatataaacatcagtgacaaaaagaaaaa  11920700                                                           --------->YAB1                                                      <---------ANAC46                                                     <---------LBD16 -------ARR11(3)                            --------->AHL20(1)  <---------YAB1 ------>ARR11(3)          --------->ZAT18   <---------AHL20(2)--------->YAB1         --------->ZAT18 --------GLK1(1)          <---------ZAT18   --------->AHL20(2)<---------ICU4  ---------->DOF2 --->DOF2         --------------->AGL15    --------->AHL20(2)--------->ICU4--------->LBD16   gatttcagaaaattgaatttcatttttgggcactaatatacaaaaaaaaattagcttcggataatcatgactaaacccccaaaagaatgccctaatgttt  11920800                                                                            =========================                                                                            <----------DOF2                                                                         <---------ARR14(2)                                                     --------->ARR14(2)  <---------ARR11(3)                                                     <---------ARR14(2)  --------->ARR14(2)                                                     <---------GLK1(2)   ------->TEIL                        <---------CCA1(2)           ------>MYB83        <---------CCA1(2)             XXXXXXXXXXXXXXXXXXXX>MIR773            ------>MYB46(1) <---------ANAC46             ====           <-----------GT1 --------->ZAT6   --------->AtMYB61    <----------DOF2                 ----   tagacttccccatttacttccccctcttatctctacttcgtctctaccaaaaccaaattctctaacccttttgtgtatctttctctctagtttccattac  11920900  Previous    Next  AGI:  At2g27970.1    Description:  CKS2 (CDK-SUBUNIT 2); cyclin-dependent protein kinase. Identical to Cyclin-dependent kinases regulatory subunit 2 (CKS2) [Arabidopsis Thaliana] (GB:Q9SJJ5); similar to CKS1/CKS1AT (CDK-SUBUNIT 1), cyclin-dependent protein kinase/ protein binding [Arabidopsis thaliana] (TAIR:AT2G27960.1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36296.1); similar to unknown [Populus trichocarpa] (GB:ABK94640.1); similar to putative CDK regulatory subunit [Ipomoea trifida] (GB:AAS79576.1); contains InterPro domain Cyclin-dependent kinase, regulatory subunit; (InterPro:IPR000789) Range:  from: 11919289    to: 11920374    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27980.1    Description:  protein binding / zinc ion binding. similar to PHD finger transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G36720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16735.1); similar to putative PHD zinc finger protein [Ipomoea trifida] (GB:AAS79577.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 11920706    to: 11926818    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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