Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ------>ZmHOX2a(2)                                                          <------ZmHOX2a(1)        <------ZmHOX2a(2)                                                         <---------TOE1(2)       <---------ARR11(3)                                                         <---------TOE2(2)       --------->ARR11(3)                                                 ------>ZmHOX2a(2) -------->TOE1(3)                                                         =================HOX2a_HOX2a ---------MYB59                                           --------->YAB1--------->ARR11(3) -------->TOE2(3)              --------->TOE2(3)         <---------YAB1 <---------ARR11(3)        --- >ZmHOX2a(1)            <-----------GT1         ----------->RAV1(1)     <-----------ARR10         <-- -->TOE2(3) <----------DOF2    --------->YAB1  <----------ID1       --------------------->WRI1-------   aacctaaacgatctctttttcgatttttcccaaacttaatttcttaagagcaacaaattttcatagtcttcgatgatctaatcgaaggatttagaatcag  11918400                                                                                        <---------ANAC58                                                                                       ------->TEIL                                                                                     <-------PIF5                                                                                     ------->PIF5                                                                                    <---------O2                                                                                    --------->O2                                                                                    <---------ANAC58                                                                                    --------->TGA1a                                                                                    <---------TGA1a              --------->LBD16                                                       <---------bZIP60(2)              ----------->GT1                                                       <---------ANAC58 ------>GLK1(1)                            <---------GLK1(2)               <------ZmHOX2a(1) -------GLK1(1)                         <---------------------WRI1      <------ZmHOX2a(1) -->YAB1    <---------LBD16  <---------LBD16--------->GLK1(2)        <-----------RAV1(2)<---------ANAC58   aaatcagagaacaatgcggaaaaaaacttacttcggagagaagacgattctttggaagaagtttagcgacttcaggaggaagaacgacgtgcctgtatcg  11918500                                                               <-----------------AGL1                                                           <----------DOF2                    -------                                   <------ZmHOX2a(1)       <---------DAG2                     <------                       ----------->GT1                  <---------ARR11(3)                    <------     <---------YAB1  ----------->GT1   >>>>>>>>>TBF1    --------->ARR11(3)    <-----------HVH21   atcgattacgattagagaagtgagagtgaaaattggaggaagaagaagcgagattgaagagctttacctgtattcgaaagtgtcatcgaagtatttctcg  11918600        ------>ZmHOX2a(2)       <---------At4g35610       --------->At4g35610                                                                     ------      <---------AGP1                                                             --------->ARR14(2)      --------->ARR14(2)                        <------ZmHOX2a(1)                --------->GLK1(2)      <---------ARR14(2)                     --------->YAB1            ============================== -->HSFB2a(2)                          --------->TOE2(3)               <------ZmHOX2a(1) <---------At4g35610 ---HSFB2a(2)   <---------CCA1(2)      --------->TOE1(3)         ---------->DOF2 <---------ARR14(2) ---LBD16----------->HVH21       ----------->HVH21       <------ZmHOX2a(1)      <---------GLK1(2)   gagtattggatctgacccatttctctctcagagatgtgaagccttaatcaggaaatggaggagaagggaaagaggaattgaagaatctgtaatctgatcg  11918700                                                              *TSS                                                        -------->HAHB4                                                    <---------AHL20(2)                                                  <---------ANAC55(2)                                                  ----------->GT1                                                  --------->ANAC55(2)                                                --------->CCA1(2)                     <----------DOF2                                               <---------ARR11(3)                     <--------------                                               --------->ARR14(2)                     <---------DAG2                                               <---------ARR14(2)                     ---------------                               --------->DAG2  --------->ARR11(3)                  <-----------GT1              --------->ARR11(3)            <--------P  --------->YAB1     <---------MYB46(3)       <---------LBD16 ----------->GT1    <---------ANAC46<---------YAB1  --------->ALFIN1    >>>>>>>>>CBP60g ---------->DOF2     <---------ANAC46<---------ICU4  <---------ANAC46    >>>>>>>>>SARD1<---------ZAT6     <---------ANAC46  <---------ATHB51 <---------ANAC58 >ZmHOX2a(2)----------->ARR10 ---------->DOF2----------->ARR10<------ZmHOX2a(1)  <---------WOX13(1) =HOX2a_HOX2a <---------ARR11(3)   <---------MYB46(3)  --------->ICU4   <---------ANAC58   tttgaaatttggggaagatagtgaaaggagaataaagtggtttggggtagatatgtaattatgaggaaatagaggggtgtttgattaactttttagagtt  11918800                                                                                     <------MYB46(1)                                   <---------YAB1                                    <------MYB83                                 <---------ICU4                                     --------->MYB59                                 --------->YAB1 --------->MYB46(2)                  <---------AtMYB61                            <---------YAB1      --------->MYB111(1)             <------MYB46(1)                        <---------ANAC58        --------->MYB59                 <------MYB83                        <---------ANAC46        --------->MYB52(2)             <---------AtMYB61                    --------->ARR14(2)        <--------P                     <---------ARR14(2)<-----                    <------------CBF--------->YAB1                      <---------ANAC58       ------      <----------DOF2   <---------ANAC58     <---------MYB52(1)         <---------ANAC58      -------   --------->GLK1(2)<---------ARR14(2)  <-----------GT1       <------------CBF<---------WOX13(1) -AGL15          <------NtERF2   --------->ATHB12     <---------MYB59   <---------ANAC46      <------ >AGL15         ------>NtERF2   --------->ICU4<---------MYB52(1)       <---------MYB46(3) <---------YAB1   ttgaaattctttagaagacgccgattgggtatgaatgattataaaccggttagttaccaaaatgaattgaaattgggtggattggtttggttctaattaa  11918900                      <---------WRKY18(1)                      >>>>>>>>>>WRKY40                      >>>>>>>>>>WRKY62                      >>>>>>>>>>WRKY18                     --------->WRKY38(1)                     --------->WRKY12                   <----------DOF2                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58               <--------P              <---------ANAC58              <-------GAMYB              <---------ANAC58             <------MYB46(1)                                                        --------->AHL20(2)          --------------------->WRI1                                                <---------AHL20(2)   --------->MYB46(3)--------->WRKY45                                              --------->AHL20(2) ----AHL20(2)<------MYB83 ---------->DOF2 <---------At5g28300          <---------HSFB2a(2)       <--- --->AHL20(2)<---------MYB46(3)          <-----------GT1               --------->HSFB2a(2)      <---- -->AHL20(2)<---------AtMYB61 --------->ARR11(3)                       <---------HSFC1(1)     ------- ---AHL20(2)--------->MYB59   <---------ARR11(3)   --------->TOE1(2)   --------->HSFC1(1)    --------   attcaacaacttgtttggttgctttgaccaaagaccttgttatttaccatcaaactacgaactcgttcattttctcgaaatttcatttaattccaacaat  11919000                                                                                                 <---                                                                                                 ----                                     --------->AHL20(2)                                          ----                                 <---------AHL20(2)                                         ---------                              ----------->GT1                                              --------->ANAC58                          --------->ARR11(3)                                         --------->ZAT14       --------->ZAT6     <---------ARR14(2)                 --------->LBD16         <---------ZAT18       --------->ANAC46  <---------CCA1(2)            <---------GLK1(2)              --------->ZAT18 ------ICU4            --------->ANAC55(2)  <---------ICU4 ----------->RAV1(2)       <---------ZAT14 -----ATHB12           <---------ANAC55(2)<---------AHL20(2) ------>ZmHOX2a(1)   <---------------AtSPL8 -->WOX13(1)          <-------TEIL   <---------AHL20(2)--------->ARR14(2)      --------->YAB1<------ZmHOX2a(1) ->MYB46(3)          --------->CCA1(2)   --------->YAB1------->TEIL         --------->YAB1 --------->ANAC58   cagtgcttcacactaggtataagatacatatctagttaatttataaaaatggctctgaatctcctggtttcaatacactaatagtagtacagtaaggaat  11919100        <------MYB83<---------MYB46(3)        <------MYB46(1)                                                --------->ATHB12            --        <---------ANAC46                                              <---------YAB1               --       --------->MYB46(2)                                           --------->YAB1    <---------WOX13(1)    <---------MYB46(3)<---------WOX13(1)                            ----------->GT1  <---------GLK1(2) ------ARR14(2)     --------->ATHB12                  --------->ARR14(2)     --------->ARR11(3)   <-- ----->ARR14(2)    <---------YAB1                 --------->YAB1  <---------ARR14(2) <---------ARR14(2) ----->ARR11(3) --------->ALFIN1           <----------DOF2        --------->GLK1(2)  --------->ARR14(2) -->GT1<---------MYB46(3)               --------->GLK1(2)     --------->YAB1 <---------ARR11(3)   ---   atatggtgtttggtgaatgtggtgattgagacacaatatgagtttctttgaatcagtatcgccatgagaatcgtgattagaccttcagattggcattgta  11919200           <-------GAMYB          <---------MYB46(3)          --------->MYB52(2)                               ----------->GT1   --------->ANAC58    <--- ------>HAHB4                                         ---------->DOF2        --------->ANAC58    ---- ------->YAB1                                       --------->AHL20(2)<---------YAB1   --------->YAB1 -------YAB1                                        --------->YAB1  --------->YAB1   --------->ANAC58 ------>ICU4                ------->TEIL     <------ZmHOX2a(1)     --------->ICU4    --------->ANAC58   atgataccttgtttgttgttcatagttatggacttaagactctaagaggagcaataaaaagaggttgaaatgatgaaacaagcacataagcatgagaaat  11919300  Previous    Next  AGI:  At2g27960.1    Description:  CKS1/CKS1AT (CDK-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding. Identical to Cyclin-dependent kinases regulatory subunit 1 (CKS1) [Arabidopsis Thaliana] (GB:O23249); similar to CKS2 (CDK-SUBUNIT 2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G27970.1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36296.1); similar to putative CDK regulatory subunit [Ipomoea trifida] (GB:AAS79576.1); contains InterPro domain Cyclin-dependent kinase, regulatory subunit; (InterPro:IPR000789) Range:  from: 11917800    to: 11918762    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27970.1    Description:  CKS2 (CDK-SUBUNIT 2); cyclin-dependent protein kinase. Identical to Cyclin-dependent kinases regulatory subunit 2 (CKS2) [Arabidopsis Thaliana] (GB:Q9SJJ5); similar to CKS1/CKS1AT (CDK-SUBUNIT 1), cyclin-dependent protein kinase/ protein binding [Arabidopsis thaliana] (TAIR:AT2G27960.1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36296.1); similar to unknown [Populus trichocarpa] (GB:ABK94640.1); similar to putative CDK regulatory subunit [Ipomoea trifida] (GB:AAS79576.1); contains InterPro domain Cyclin-dependent kinase, regulatory subunit; (InterPro:IPR000789) Range:  from: 11919289    to: 11920374    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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