Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->LBD16                  --------->GLK1(1)                                                   --------->HSFB2a(2)             --------->LBD16                                                   <---------HSFB2a(2)      --------->ARR11(3)         --------->TOE2(3) <-----------HVH21      <---------LBD16           <---------ARR11(3)  ----- ------>GT1       <-------TEIL        <------ZmHOX2a(1)                 ----------->HVH21 ------>ZmHOX2a(1)   gtaatacaaaacctcatcgatgcataccccttcacctataggataatggttttccggacaattcagttttctccatgacatcttccgagttcctaatgtc  11904600                                                                                    --------->YAB1                                                                                   <---------YAB1                                                                                 --------->YAB1                                                                                 --------------->AGL15                       --------------->AGL15                                     --------->TOE2(3)                       ==========================================================================MADS_MADS                       <---------------AGL15                                     <---------------AGL15                   --------->ARR14(2)                                           ----------------->AGL2                   <---------GLK1(2)                                        --------->YAB1                   <---------ARR14(2)     <---------TOE1(2)                <------ZmHOX2a(2)                 ----------->ARR10        <---------TOE2(2)               --------->ARR11(3)         ------>ZmHOX2a(1)    ----------->GT1                             <---------ARR11(3)  --------------->AtSPL8    ---------->DOF2          <----------DOF2     <------ZmHOX2a(1)      ----- ---->YAB1   --------->ATHB12--------->DAG2<---------YAB1     <---------MYB52(1)----------------->AGL3   ataatatgttcctcttcattagatactccataaagtgaatttcttatgtttgatactttatatcgtttgccaataggatcataccataataagcttcttg  11904700                                                                                 <--------ATHB1                                                                                 --------->ATHB51                                                                                 -------->ATHB1                                                                                 <---------ICU4                                                                                 --------->YAB1                                                                                <---------ATHB51                                                                                --------->ICU4                                                                                <---------ATHB12                                                                             ------------>ATHB5                                                                            <---------MYB55(2)                                                                            --------->MYB46(3)                                                                           --------->ANAC46                                                                           --------->ANAC58                                                                           --------->ANAC58                          <-----------GT1                                  ------>MYB83                    <---------AHL20(2)                                <-----------GT1          ------                   <---------AHL20(2)                    ----------->GT1   ------>MYB46(1)     ------                   <---------AHL20(1)                  <------ZmHOX2a(1)--------->MYB46(3)    <------                   --------->AHL20(2)      <<<<<<<<<<WRKY38      --------->AHL20(2)         <--------         --------->AHL20(2)                <<<<<<<<<<WRKY26      <---------AHL20(2)         <--------HAHB4         <---------AHL20(2)                <<<<<<<<<<WRKY43     --------->AHL20(2)         --------->ICU4 ---->ATHB12      --------->ICU4         ----------->GT1----------->GT1<---------At5g28300 <---------YAB1   attagctatatttaaatgtaatttttttttactctctctcaattggtcaaatttagaggagataaaaaaaatttaccacccaataattgtttcattatta  11904800                                                                                      <---------ZAT14                          --------->AHL20(2)                                          <---------ZAT18                      --------->AHL20(2)   <---------ANAC58                           --------->ZAT14               <---------ANAC46            <---------ANAC58                           --------->ZAT18 --->ATHB51    <---------At4g35610       <-----------GT1        --------->ANAC46  <---------------AtSPL8 --->ATHB12    --------->At4g35610--------->ANAC58       <-------TEIL             --------------->AtSPL8 ---YAB1       ----------->GT1    --------->ANAC58   <---------YAB1              <---------YAB1 -ICU4        <---------AtMYB61  ------->TEIL        <---------TOE2(3)   --------->TOE2(3)   ttggctaaacttaggtgaggtgaataaaaaaaatgaacccaattttcgttccattaacattcatttacgtcgttttcttaaatatgagtacacatatatc  11904900                                                        <---------TOE2(3)                                              <---------------AtSPL8                                              <---------------AtSPL3                                             --------->ANAC55(2)                                             <---------ANAC55(2)                                             <---------ANAC55(1)                                             <---------ANAC58                           --------->YAB1                                        <-------TEIL    <---------TOE1(3)         --------->ANAC58                                      <-------MYC2     <---------DOF5.7(2)        ----------->GT1                                      <-------MYC3   --------->DOF5.7(2)          --------->ANAC55(2)                                      ------->MYC3  --------->TOE2(3)             --------->ANAC58                                      ------->MYC4  --------->TOE1(3)             <---------ANAC55(2)                                      ------->MYC2------->TEIL             <------------CBF <--------                         --------->AHL20(2)  <---------ANAC46           <-----------GT1 --------->AHL20(2)          ----------->GT1<---------AHL20(2)  <---------ANAC58 <---------YAB1  <-----------HVH21   agtttattcatatagttaaactaatatttaaatactaacatgtgcatacgtgtacgttaatgttatgagtcattttacattgtcaagtaataaaaattga  11905000                                                            <---------GLK1(2)                                                           <---------HSFC1(2)                                                           --------->HSFC1(2)                                                          --------->ANAC58                                                      --------->ANAC46                                                      --------->ANAC58                                                      --------->ANAC58                   <---------ANAC58                                                     ------>MYB46(1)                  --------->ALFIN1                                                     ------>MYB83                     <---------ANAC46                                                   --------->TOE1(2)           <---------ANAC58                                                   --------->AtMYB61           <---------ANAC58   <--                                                 ------->TEIL                 <---------ZAT2      ---                                               --------->MYB46(3)            ------>MYB83<---------ANAC58                                              ------>MYB83--------->ANAC58   ------>MYB46(1)     <---                                              ------>MYB46(1)       --------->ZAT2    <---------DEAR3(1)                                  ----------->HVH21--------->DEAR3(1)--------->AGP1<---------AtMYB61-                              <---------ZAT14 --------->ANAC58      <---------ZAT2 <-----------RAV1(1) --------->YAB1    --------->TOE2(3)          --------->ANAC46      <---------At4g35610  <---------ANAC46 ----CBF           *TSS       --------->ZAT14 --------->ANAC58      --------->At4g35610 <------NtERF2   aaatgagaatttcattttgtttcttaatagacttcagtgatggagaccaagcacctacgcaagcttctccagctctaccaagcttgtggtggcgaacaag  11905100                                                            <---------ALFIN1                                                      --------->AtMYB61                                                   --------->DEAR3(1)                                                   --------->AtMYB61                                                   <---------ALFIN1                           <---------ICU4         --------->MYB46(3)                        --------->bZIP60(2)      ------>NtERF2                        --------->bZIP60(1)      <---------ATERF1(1)                        <---------bZIP60(1)     --------->DEAR3(1)                    <-----------TGA1          ------->GAMYB --------->RAP2.6(2)                    <-----------HVH21        --------->ANAC58           --------->ORA47(1)   <---------YAB1<-----------TGA1 --------->AtMYB61 -------At4g35610  --------->ANAC46          --------->ANAC46 <---------ZAT2  --------->ZAT14 ------>At4g35610  --------->ANAC58 --------->WRKY38(1)    --------->MYB46(3) <---------ZAT14 ------ARR11(3)    --------->bZIP60(2)       --------->ANAC58------>NtERF2    --------->ZAT18 -------->ZAT18    --------->ANAC58 --------->WRKY12  <---------ALFIN1      --------->ANAC46      <--   agctcacaaaaaccgtccaaaacgtcacatcatcaccattgactccaacgccaccaccacagccaccttcggcattagactccactatggctctcaccat  11905200                                                      <---------O2                                                      --------->O2                                                    <---------ALFIN1           <--------P                             --------->LBD16          <---------ANAC58                        ------>NtERF2          <---------ANAC58                       --------->ANAC58                              ------          <-------GAMYB                          --------->ANAC46                              ------         <---------MYB46(3)               <---------ZAT14                                    <-------     ------>ZmHOX2a(1)                    --------->ZAT14                     <---------MYB46(3) --------DOF2                     <----------DOF2--------->ANAC58         <---------WRKY12   <-------   ctttatcctcttggttgctctcttcttcatgggtttcttttcagtttacttccgccacttcgcagacagttcaagttcaacggttgatatttcttccatg  11905300                                 <---------DAG2          ==============HOX2a_HOX2a          ------>ZmHOX2a(2)     <------NtERF2        <---------ARR14(2)  <-----------HVH21        <---------ARR11(3) --------->O2        --------->ARR14(2) <---------TGA1a        <---------GLK1(2)  <---------O2        <---------ARR14(3) --------->ANAC46                  <---------ANAC46        --------->AGP1   <---------ALFIN1                 --------->DEAR3(1)                    -----        --------->ARR14(3) --------->bZIP60(2)           --------->ANAC58            <---------GLK1(2)        --------->ARR11(3) ==================bZIP_DOF    --------->ANAC58--------->LBD16       >>>>>>      ----------->ARR10 <---------REM1(2)            <-----------HVH21  --------->HSFB2a(2) --------- --->ANAC46      <------ZmHOX2a(1)<----------DOF2   <---------CCA1(2)   <---------HSFB2a(2)<---------TOE2(2) --->AtLEC2 ------>ZmHOX2a(1)  ------>NtERF2     <------NtERF2         <---------LBD16     <---------TOE1(2) --ANAC58<------ZmHOX2a(2) --------->TGA1a     <---------DEAR3(1)    <---------ARR14(2)   <---------- --ANAC58===============HOX2a_HOX2a      --------->ARR14(2)  --------->RAP2.6(2)   <---------YAB1   ccaagaacaagatcctctaggatgtctccacgtcgcctttccacatccgtcgtcgtatcacggccgtatagtttccggaggggtcttgattctcaggtaa  11905400                                                                                            ---------                                                                                          --------->ANAC58                                                                                    <-----------HVH21                                                                     ------>ZmHOX2a(2)    --------->ANAC46                                                                    <---------GLK1(1)<---------MYB52(1)                <----------DOF2            --------->ATHB12     --------->SPL7      <-------GAMYB              <---------YAB1  <---------YAB1                   <---------MYB52(1)  ----------->GT1 ---->GLK1(1)--------->ARR11(3)      ------->GAMYB            <---------SPL7     ------->TEIL >>>GT-1     <-----------GT1 <---------TOE2(2)               <---------MYB46(3)--------->ZAT14 -->GT1      <---------ARR11(3)     <---------LBD16       --------->ANAC46     <---------ZAT14    --- -RAV1(2)   --------->YAB1   <---------TOE1(2)        <-----------HVH21  ------>NtERF2    --------->ANAC58   atccatttctctaattatctttctcggttcttatgttaaccggcaagattgggacatttcaggccgttcgatctctgccagtgtaccgttacacgaaagc  11905500  Previous    Next  AGI:  At2g27940.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL2E (ATL2E) [Arabidopsis Thaliana] (GB:Q9SJJ7); similar to ATL6 (Arabidopsis T?xicos en Levadura 6), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G05200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16733.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 11905019    to: 11905944    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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