Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------LBD16                    ------>ZmHOX2a(1)                 ------>MYB46(1)                 ------>MYB83              <---------HSFB2a(1)              <---------HSFC1(2)              --------->HSFC1(2)             -------->P             ------>MYB46(1)             ------>MYB83            xxxxxxxxxxxxxxxx>smallRNA(s)           <---------MYB55(2)           <---------MYB111(2)           --------->MYB46(3)           --------->AtMYB61           <---------MYB46(2)           --------->DEAR3(1)           <---------ALFIN1            <------ZmHOX2a(2)          --------->MYB46(3)      --------->ANAC58                           --------->ZAT14     xxxxxxxxxxxxxxxx>smallRNA(s) --------->ANAC46                      <---------ATHB12  <---------TOE2(3) ==========================HOX2a_HOX2a     ----------->HVH21  ------>ZmHOX2a(1) ---->LBD16<---------MYB111(1)  <---------ALFIN1 <---------ALFIN1    <---------ALFIN1     <---------ANAC55(2) --->ANAC55(2)--------->HSFB2a(1) --------->ANAC58     <---------MYB52(1)    <---------ZAT14   tattaagtttccaccaaccttcctcgggtttcgaccacgcgatcagtctttccacccgttctccatgacccccactcagtgtcctgactatcacatgagc  11874900                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                   --------->ANAC58                               --------->ANAC58                                            --------->PCF2                      =========================HOX2a_HOX2a                                <----------                      ==========================HOX2a_HOX2a                     ------>NtERF2                      ------>ZmHOX2a(1)                                        --------->DEAR3(1)                      <----------DOF2                                          --------->DREB2C(2)                    ------>ZmHOX2a(2)                                          --------->ANAC46    --                   <------ZmHOX2a(2)                                          <xxxxxxxxxxxxxxxxxxxxxx                  --------->ARR14(2)    <------ZmHOX2a(2)                   --------->ANAC46       --                  --------->ARR11(3)   <---------ARR14(2)                   <---------ALFIN1---------                  <---------ARR14(2)   --------->ARR14(2)                 <xxxxxxxxxxxxxxxxsmallRNA(s)             --------->STY1(2) --------->ANAC58                         xxxxxxxxxxxxxxxx>smallRNA(s)   <---------TGA1a<---------GLK1(2)--------->ANAC58                 <-----------RAV1(1) --------->HSFB2a(2)   ==============================bZIP_DOF------>ZmHOX2a(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->TGA1a<---------ARR11(3)--------->MYB46(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---  ------->TEIL    --------->AGP1  ------->TEIL          XXXXXXXXXXXXXXXXXXXX>MIR419<xxxxxxxxxxxxxxxxsmallRNA(s)   catggacgtctccctagccagatcctttaagaaacgcacccgatctcgacatttgtcttgaacaccaaaaatgttgccacaccgccatttccaggcccac  11875000                     >>>>>>>>>>WRKY26                                               --------->ATHB12                     <---------WRKY18(1)                                  --------->ANAC46                     >>>>>>>>>>WRKY11                                   --------->AtMYB61                     >>>>>>>>>>WRKY43                                   <---------ALFIN1        --------->ANAC58                                               --------->MYB46(3)   ---------        --------->ANAC58     --------->ZAT14                          -------->P --------->YAB1 -----      ---------->DOF2>>>>>>>>>>WRKY38                               --------->MYB46(3)   <---------ANAC46 -TCP11(1)           >>>>>>>>>>WRKY6                              --------->ANAC58 <---------YAB1 ---->MYB83         --------->WRKY45                              --------->ANAC58<---------TOE2(3) xsmallRNA(se3)     --------->WRKY38(1)                --------------->AGL15     --------->MYB52(1) ---->MYB46(1)      --------->WRKY12              <-----------HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) >TCP16(2)     ---------->DOF2                ------>NtERF2<---------GLK1(2)    <---------ATHB12<---- ------MYB111(1)--------->DAG2                --------->LBD16  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   caaatagacaaagcaaataaagttgaccaagtactctcacaagtcttccgcctatcacccagattagcaaacaaccactccaataacgattgtgtaaaga  11875100                               ===========================HOX2a_HOX2a                               ------>ZmHOX2a(2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  ===================HOX2a_HOX2a             --------->ANAC46 ============================HOX2a_HOX2a                             <--            <---------LBD16   <------ZmHOX2a(2)                                       <---------ZAT2          -------->P         <---------ARR14(2)                                       --------->At4g35610      ------>NtERF2<-----------ARR10                                       <---------WOX13(1)     ---    <------NtERF2 ====================HOX2a_HOX2a        --------->YAB1   >>>>>>>>>ARR2       <------  <---------DEAR3(1)        <---------ARR14(1)          <---------ATHB12  >>>>>>>>>ARR1       <------ ->DOF2 <----------DOF2  <---------At4g35610          --------->WOX13(1) --------->ATHB12  <--------- ---->ARR11(3)    <------ZmHOX2a(1)       ----------------->AGL1 --------->GLK1(2)<-----------GT1 <-- -----ARR11(3)--------->LBD16--------->ARR14(2)    <------ZmHOX2a(1)    <---------YAB1<---------At4g35610   actctcggcgcttacccgcaggaactaagcggatccaaatgccttccatagcaggacaatcacgaagaatatgtatgattgttttttcagctcctttaca  11875200                                                                                        --------->RAP2.6(2)                                                                                        --------->DEAR3(1)                                                                                        --------->RAP2.3(2)                                                                                       --------->RAP2.3(1)                                      ------>ZmHOX2a(1)  --------->ARR11(3)            --------------                                   ------>ZmHOX2a(1)  --------->YAB1               ----------->ARR10- -------ARR14(2)                  <---------ALFIN1   <---------At4g35610 --------->ANAC58          -- ------>ARR14(2)                ------>ZmHOX2a(1)    --------->At4g35610 --------->ANAC58       <xxxx -----------AG                 <---------ALFIN1  <-----------TGA1        --------->ANAC46 <---------ALFIN1 -----------AGL1             ------>NtERF2      --------->YAB1          *TSS     <------ZmHOX2a(1)<-- -DOF2                 <---------At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ARR14(2) -------GLK1(2)        --------->At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ARR14(2)   gatttggcaaatgtccgaatcacttagatgcctcctcctcctctcagcattcgtcatcagaacttgctgcattccaagccataggaagagccgcactctc  11875300                                                                 <---------AHL20(2)                                                              --------->AHL20(2)                                                             <---------ICU4       --------->ANAC58                                   <---------AHL20(2)       --------->ANAC58                                  --------->AHL20(2)       --------->ANAC46                                  <---------AHL20(2)   --------->SPL7                                     <---------ICU4 <---------MYB52(1)                                   -------->ATHB1 ->AtSPL3                                            --------->AHL20(2) -------->LBD16                                      <---------AHL20(2)     <---------ARR11(3) ------->ANAC46                      <---------WOX13(1) <---------YAB1      --------->ARR11(3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <------------CBF <---------ATHB51   ---------->DOF2 -------LBD16                     <---------YAB1     --------->ICU4<------------CBF       <---------AHL20(2)   tccggtaccacgacttcccatactctcttgtaatttccgattgatatcaagtcaaattattaatttttatattgaaaagacatttggagtattttttttg  11875400                                                                                                   --                                                                                                -----                                                                                             --------                                                    <---------ICU4                           --------             --------->AHL20(2)              <---------LBD16                                 --------         <---------YAB1                   <----------DOF2         <----------DOF2         -------->ZAP1  --------->ICU4                         <---------ANAC58    --------->DAG2             <---------WRKY18(1)  <---------YAB1        <-----------GT1  <---------ANAC58   ---------->DOF2            ----------->HVH21   ggttattatttctgataaaatcaaatttacattgagaagaatggctttggggaatcaatacaaaaagtcttttctacgtagaagaaaacttgacccagca  11875500                                                              <---------------AGL15                                                              --------------->AGL15                                                             ----------------->AGL2                                                             <-----------------AGL1                                                             ----------------->AGL1                                                             ----------------->AG                                                             --------------->AGL15                                                            ----------------->AGL1                                                            <-----------------AG                                                      --------->ATHB51                                                      <---------AHL20(2)                                                      <---------ICU4                                                      --------->ATHB12         <---------AHL20(2)                                                     --------->ICU4            --------->AHL20(2)                                                  --------->AHL20(2)       --------->AHL20(2)                                                  <---------AHL20(2)       <---------AHL20(2)                                                 --------->AHL20(2)        --------->AHL20(1)                                                 <---------AHL20(1)       <---------AHL20(2)                                              <---------AHL20(2)          --------->AHL20(2)                                              --------->AHL20(2)          <---------ATHB51                                              --------->AHL20(1)     ----------->GT1                                             <---------ATHB51<---------------AGL15                      --------->ANAC58       --------->ICU4 <-----------------AGL1       --------->GLK1(2)                     <---------AHL20(2)   --------->DAG2 ------->TOE2(3)      --------->ANAC55(2)    --------->AHL20(2)  ---------->DOF2 ------>RAV1(1)       --------->ANAC58  ----------->GT1     ----------------->AGL2 ->ANAC58             <---------ANAC55(2)<------ZmHOX2a(1)  ----------------->AG               <----- ->ANAC58             --------->ANAC46 --------->MYB59--------->AHL20(2)  --------->ICU4       ------ ->ANAC46        <---------AtLEC2    <--------P  <---------AHL20(2) ----------->GT1       <---------YAB1   acattagagattccattttgcattacgaaacttaaactggttaggaaataatttaattatttgcccaaaaagggaaataatttaaacaaaatatgatttt  11875600          <---------AHL20(2)          --------->AHL20(2)          <---------YAB1         <---------AHL20(2)         --------->AHL20(2)       <---------YAB1    <---------MYB52(1)                                                    --------->DAG2 <---------TOE2(3)                                                       ---------->DOF2 ----AHL20(2)                                               <---------ANAC58 --->AHL20(2)                                               <---------ANAC58        --------->TOE2(3)   attgacgttattttaattaagcttcagtcttaactcttaactcttaagtagtttcttaaatagtgtgtcaaaaaaaaaagtaagtttcttaatactgctt  11875700                                                      ----------->GT1                                               <---------YAB1                  --------->YAB1             <---------ICU4             <---------TOE1(2)              <---------YAB1          <---------ANAC58                  --------->ICU4          <---------ANAC46                --------->YAB1                         <---------ANAC46          <---------ANAC58                <---------ICU4                    <---------ICU4 <---------ANAC46     <---------AtLEC2                    --------->ICU4                     --------------->AGL15     <---------ANAC58                    <---------ATHB12                  --------->MYB46(3)     <---------ANAC58                --------->AHL20(2)          ------->TEIL <---------MYB52(1)   --   ctaatttgcatgtcgtagtatcagaagttttttcaacaaaaaaatcattatgaagagagtttatatgaatatcgctaaccattatgtggaattgtggata  11875800  Previous    Next  AGI:  At2g27870.1    Description:  transposable element gene. similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 11874328    to: 11875272    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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