Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             ------>ZmHOX2a(2)                                                                          --------->CCA1(2)                                                                          <------ZmHOX2a(2)                                                                         <---------AGP1                                                                         --------->AGP1                                                               <---------DOF5.7(2)                                                               --------->MYB52(1)       --------->YAB1                                                             --------->DOF5.7(2)       <---------YAB1             --------->TGA2(1)                         <---------GLK1(1) --------->ARR11(3)             --------->bZIP60(1)                       --------->GLK1(1) <---------ARR14(2)             <---------bZIP60(1)               <---------HSFC1(2)        <---------ARR11(3)        <---------ICU4         ------>ZmHOX2a(2)  --------->At4g35610    --------->ARR14(2) ---->DOF2 <-----------GT1    <------ZmHOX2a(2)--------->HSFC1(2)       <---------CCA1(2)        ----   agaaacatcagaattacatcacaacatcaccgatctcaatacattgcgaaacatctgaattccgataacgaatcagatctgagacttctatcataaacac  11873600                                                ------>NtERF2                                                --------->LBD16                                               --------->ANAC58                                               --------->ANAC46                                             --------->CCA1(2)                                             <------ZmHOX2a(2)                                             --------->ARR14(1)                                            <---------GLK1(2)                                            --------->ARR14(2)<---------ARR11(3)                                            <---------ARR11(3)--------->ARR14(3)                   --------->ANAC58         --------->AGP1    <---------ARR14(3)         <---------ICU4                   --------->ANAC58         <---------ARR14(2)--------->ARR11(3)       <---------YAB1           <------ZmHOX2a(2)  --------->ANAC58 --------->ANAC58                  <---------YAB1          <---------ARR11(3)  --------->ANAC58------>ZmHOX2a(2)                --------->YAB1 ----->DEAR3(1)  --------->MYB52(1)   <-----------GT1--------->YAB1           <---------ATHB12   cgaagaacaagagatcaaaaaacgaaatcgataagcatttttaccagatccgccatcttaacaagaccttcaagtctcgaatcatgcttaatattgatac  11873700                         --------->MYB52(1)                      --------->AtLEC2                 --------->ANAC58                 --------->ANAC58                                                             -------                 --------->ANAC46                                                             <------               <---------ALFIN1                                                               <------               --------->AtMYB61                                                              <------           ----------->HVH21                                                         <---------DAG2           <---------ETT(1)                                                        ------->TEIL          --------->DEAR3(2)                           ------>ZmHOX2a(2)         --------->MYB46(3)          ------>ZmHOX2a(2)                          <---------ARR11(3)         --------->ANAC58-----         <------ZmHOX2a(2)                           --------->ARR11(3)         --------->ANAC58<----        <---------ARR14(2)               --------->ANAC46                   --------->ANAC58  <------        --------->ARR14(2)  ------->GAMYB--------->ANAC58    --------------------->WRI1  <-----------RAV1(1)  ------->TEIL--------->MYB46(3)         --------->ANAC58  <---------YAB1   --------->ANAC58  <------   gatgaaactggatccgaccactccattcaacggtatcaggctcaagcaagtgtttgatcttatcgttgtaaacatcgagcgcaagcaccttatgtggcgt  11873800                                                     --------->AtLEC2                                                  <---------ATHB12                                                  <------ZmHOX2a(2)                                               --------->DEAR3(1)                                              --------->RAP2.3(1)                                             ------>NtERF2                                             <---------ATERF1(1)                                             <---------RAP2.3(1)                                            --------->DEAR3(1)                                            --------->RAP2.3(2)                                            <---------DEAR3(1)                                           --------->RAP2.6(1)       --------->ARR11(3)                  --------->RRTF1(1)       <---------ARR11(3)                  --------->ATERF1(1)  --------->WRKY18(1)                      --------->ERF1 <--------ZAP1                             --------->RAP2.3(1) <-----------HVH21                        <---------ATERF1(1)                                  ------ -->bZIP60(1)                             <---------RAP2.3(1)                                <------- ---ANAC58                                --------->LBD16                                  <------ZmHOX2a(2) ---bZIP60(1)                             ------>NtERF2                                    --------->CCA1(2) ---bZIP60(2)                            --------->ANAC46       --------->MYB52(1)        --------->AGP1 ---->ATERF1(1)                          <---------DEAR3(1)     <---------DOF5.7(2)       <---------ARR14(2) --NtERF2                   --------->MYB46(3)--------->ATERF1(1)  <---------MYB46(3)     --------->ARR11(3) ---ANAC46                  --------->DEAR3(2)<------NtERF2    <---------WRKY12           --------->ARR14(2) ---ANAC58<----------DOF2  ------->TEIL <---------LBD16        <---------WRKY38(1)        <---------ARR11(3)   ctcggtcaagagcttttcacagagatgtgaaccgatgaaacctccggcgccgatcatgcatattgtcaacggttgtatcggtttcccgtcgagatccact  11873900                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                               <-----                                                                                           <---------DREB2C(2)                                         --------->YAB1                                    <---------DEAR3(1)                                      --------->YAB1             --------->GLK1(2)         <---------ANAC46                  <---------AHL20(2)--------->AHL20(2)           <-----------ARR10      ----------->TGA1           --------->ANAC58     ----------->GT1                 <---------GLK1(2)     <---------MYB46(3)   --------->At4g35610        <------ZmHOX2a(2)       <---------ZAT14                --------->ALFIN1 --->ANAC46--------->ANAC46 --------->At4g35610       --------->ZAT14      <------ZmHOX2a(1) -------- --ALFIN1  --------->ANAC58 <---------At4g35610 <---------ARR11(3)   ---------->DOF2*TSS----------->HVH21   ctattagctccattcgccattttttttctcagatcagaaaaaataatcaagttctctgtagagagagaatctaaagaggaagagagagtggtgacggtgg  11874000                                                                                        --------->ZAT14                                                                                        <---------ZAT14                                                                                        <---------ZAT18                                                                                        --------->ZAT18                                                                                      ---------------                                                                                     <---------ANAC58                                                                                     <---------ANAC46                                                                                     <---------ANAC58                                                                                   <---------ANAC46                                                                                  --------->ALFIN1                                                                                 ------->PIF5                                                                                 <-------PIF5                                                                                 ------->MYC2                                                                                 ------->MYC3                                                                                 <-------MYC2                                                                                 <-------MYC3                                                                                <---------ANAC58                                             --------->MYB52(2)                 <---------ANAC58 -------CCA1(1)                   <------NtERF2                                 <------NtERF2 -------RVE1(1)          ----------->HVH21  <-------TEIL                        <---------ANAC46 ------ARR14(2)         ------->MYC3     <---------MYB46(3)                    ------>NtERF2 ------ARR11(3)         <-------MYC3  <------------CBF                        <---------ANAC46 ----->ARR14(2)        <------------------SPL14                          <---------ARR14(2) ----MYB46(3)    ------->TEIL    --------->ANAC58                        --------->ARR14(2)        <- ->At5g28300   <-------TEIL      --------->ANAC58         <---------GLK1(1)<---------DEAR3(1)      <-   atatttaagagagaagatgcatcgcatgtgaacggaggcaaattggttcgtcgaattttgaaatctcactctctgtatcggcgcgtggtgtgtactcgct  11874100       ------>ZmHOX2a(2)       =========================HOX2a_HOX2a     <---------ARR11(3)     --------->ARR11(3)                                                    <---------YAB1  <-------MYC2                                                           -------->HAHB4  <-------MYC3                                                           --------->YAB1  ------->MYC3                                                           <---------ICU4  ------->MYC2                                                          <---------ATHB51  <-------PIF5                                                          --------->ICU4  ------->PIF5                                                        --------->YAB1                < --------->ANAC46                                                --------->ICU4                ------ --------->ANAC55(2)                                             <---------YAB1                ------ <---------TGA1a                                     <---------ICU4   <---------ICU4           <----- --------->O2 <---------AHL20(2)                     <--------HAHB4  --------->AHL20(2)        ------ <---------O2--------->AHL20(2)     --------->AHL20(2)         --------->YAB1                  <----- --------->TGA1a                    <---------AHL20(2)        <---------YAB1  ------->TEIL    <------ --------->bZIP60(2)                <---------AHL20(1)    <XXXXXXXXXXXXXXXXXXXXMIR823         <------ >AtSPL8 ----------->GT1        <---------CCA1(1)    --------->YAB1  <---------AHL20(2)       ------- --------ALFIN1                 <---------RVE1(1)   --------->ICU4<---------ICU4              <------ -----------OsbHLH66     <------ZmHOX2a(1)          <---------ATHB12<---------YAB1          ---------   tccacgtgatctcgtttaaattggaaaggatgcgatattttatttgttcgactaatcattttgtatgattattaattatgaatgtttagtagtctaataa  11874200 ---------ANAC46 -->HAHB4                                                                                 ---------->DOF2 --->ATHB51                                                                           <----------ID1 ----ICU4                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i) --->YAB1                                                                        --------->MYB52(1) ---ATHB1                                                                    --------->ANAC58     xxx ---YAB1                                               <----------DOF2       --------->ANAC58    <xxx ---ATHB12                                     <----------DOF2 <---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s) -->ICU4                 <----------DOF2       --------------------->WRI1   xxxxxxxxxxxxxxxx>smallRNA(s) ---ATHB51   ----------->GT1      ----------->GT1   <-----------GT1         xxxxxxxxxxxxxxxx>smallRNA(si3) >YAB1       <---------TOE2(3)<-----------GT1 --------->MYB52(2)           <--------P<xxxxxxxxxxxxxxx   ttgtgtttaagagttaagaaaaaacttctttttaactagataaatcgttctttgtaactttcgatttttttttttgggtaagccaagggagacaaagtct  11874300                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                          ----------->HVH21                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                        --------->TGA1a                                        <---------ANAC46                                        <---------TGA1a                                        <---------ANAC58                                           <-                                        <---------O2--------->At4g35610                         <----                                        --------->O2<---------At4g35610                         -----                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  -------                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <-------                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     --------                  ----------->GT1    <xxxxxxxxxxxxxxxxsmallRNA(i)                            <-------                ==================================bZIP_DOF                                   --------           <---------TOE2(3)         ----------->HVH21                                       --------        <---------YAB1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <--------     --------->AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     --------->GLK1(2)   --------->ARR11(3)          <xxxxxxxxxxxxxxxxsmallRNA(i)           ----------->RAV1(1) <---------ARR14(2)   <---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <-----------HVH21     ---------->DOF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------ANAC55(2) xxxxxxxxxxxxxsmallRNA(s)<-----------GT1<---------ANAC58      <---------ZAT6      ----------->GT1xxxx xsmallRNA(s)   ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->MYB46(3)    --------->ARR14(2)   cccaagatttattaatgaaaaagaaaattacattcgcacttgacgtgaaaccgtagctccactagtgtcatccaacaaaataaaacgtaaagaatccgga  11874400                                                                      <---------ANAC58                                                                     --------->At4g35610                                                                  <---------MYB52(1)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <-------GAMYB                                                                <---------MYB46(3)     --------->MYB52(1)                                      ------------>AtMYB77 ------>MYB46(1)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------>MYB83                                            --------->At4g35610 --------MYB59                                        <---------MYB52(1) -----ARR14(2)                                       <-----------TGA1<---------At4g35610 ---->ARR14(2)                                       <-----------HVH21<---------ANAC58 -->LBD16               --------->YAB1              --------->ANAC46--------->MYB52(2)       <------- --ANAC55(2)         --------->MYB52(1)    xxxxxxxxxxxxxxxx>smallRNA(i)             ----------->GT1 ->ANAC55(2)         ------>MYB83      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <-------MYC3 --HSFB2a(2)         ------>MYB46(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->TOE1(2) ->HSFB2a(2)       <---------MYB59  <-------TEIL -------->Pxxxxxxxxxxxxxxxx>smallRNA(s)      -------- ->ANAC46    --------->YAB1     xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -LBD16   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------->MYC3 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <-------------------   accaaactaagagaatgaaaacctaatggtaacgaaaatgcatagttggctaacccgtcagcaagacggttagcttccctataaacgtgtgaaatacgga  11874500  Previous    Next  AGI:  At2g27860.1    Description:  AXS1 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 1). similar to AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) [Arabidopsis thaliana] (TAIR:AT1G08200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43127.1); similar to unknown [Populus trichocarpa] (GB:ABK94776.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16707.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 11871470    to: 11873984    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27870.1    Description:  transposable element gene. similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 11874328    to: 11875272    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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