Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------YAB1                                            <----------DOF2                                         <---------ALFIN1                                         --------->REM1(1)                                        ------>MYB83                                        ------>MYB46(1)       ----------->GT1                  -------->P                                             <-----  <---------ANAC46                    --------->AtMYB61                        --------->DOF5.7(2) ----ZAT14    <-------TEIL            <---------MYB59                 --------->YAB1---------->DOF2   agttgagtattgtatatacatggaaacagatgctaatcgacctacactttgattcaagagaaatgctctcaattagaagacgttaccaaagttgatgaaa  11858000                              --------->ATHB12                             <---------YAB1                              <---------HSFB2a(2)                           --------->YAB1                                --------->HSFB2a(2)                         --------->ANAC58                            --------->MYB52(2)             -                         --------->ANAC46            ------->TEIL   <-------TEIL            ---------                         --------->ANAC58        <---------ICU4    --------->ARR14(2)       --------- ------GT1        <-------GAMYB               --------->YAB1       <---------ARR14(2)   --------->ALFIN1   ccatttcgactaaattcttcggttaacaagcatcattgatacagagaaacataagtaccttgagaagaggttcgtcgagaactgaaccaagtggaagcac  11858100                                                  --------->YAB1                                          <---------ARR14(2)                                          --------->ARR14(2) -------->ZAT6          <---------LBD16<---------HSFB2a(2)                                          < >ANAC58  --------------->AtSPL3       --------->HSFB2a(2)                           ----------->RAV1(1) >ANAC58  <---------------AtSPL8      <---------LBD16                   <---------ZAT6     --------->AHL20(2)   taacactatgaaatcgtacatggatgctcggaagaaaacttctggattcgaatcaaaatcgaaactttgcattagagtaagataaacccacaaataaaaa  11858200                                                       --------->TOE1(2)                                          --------->ANAC58                                          --------->bZIP60(1)                      --------->MYB52(1)                                          <---------bZIP60(1)       --------->TOE2(2)                                          --------->bZIP60(2)       --------->TOE1(2)                                         <-----------STF1          --------->HSFC1(2)                                        <------ZmHOX2a(1)          <---------HSFC1(2)         <------ZmHOX2a(1)<---------ARR14(2)           --------->TOE2(3)          ----------->HVH21        --------->LBD16   --------->ARR14(2)--------->TGA2(2)      --------->HSFB2a(1)      <---------LBD16    <------ZmHOX2a(1)--------->ANAC58         <---------HSFB2a(1)         >>>>>> -------TEIL   --------->MYB52(1)--------->YAB1        --------->TOE2(2)          ----------->TGA1   cattcatttcaggaaaaaaacagaagaggattcaaacatcaaggacgtcatcacaaaccttggaatagaaccttcgattcgagactgacgaagagaagaa  11858300                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                    <-------TEIL                                                             <------ZmHOX2a(2)                                                           --------->At4g35610                              <---------ANAC58        <---------ANAC58            --------->ARR14(2)   --------->ALFIN1           <---------ANAC58        <---------ANAC58            <---------ARR14(2) --------->ALFIN1----------->GT1                     <---------MYB46(3)         <---------MYB46(3) >>>TBF1       <------ZmHOX2a(1)                     --------->MYB55(2)   <----------DOF2   gaagtgtggaagcgcgaggaagtgaaattagggcttgggagagagcgtctagcgatgggtgagatcaaaattcgtgctttagcggttctgaagatggagc  11858400                                                             --------->TOE2(3)                                                            <----------ID1                                                   --------->ARR14(2)                                                   <---------ARR14(2)                       ---------       <---------ETT(2)                           <---------GLK1(1)                      <---------DEAR3(2)       --------->ETT(2)                 *TSS  <---------HSFB2a(2)   <----------DOF2      ----------->GT1   ctagaaatgtagacctagttgcagacatttttcttcgactgcttcgttctgcaaatcccaaaaccacaaactttgaagggactgaagaagacggttcaat  11858500                                              <---------YAB1                                            --------->YAB1                       <---------ANAC58     <---------ICU4      --------->YAB1                       <---------ANAC58    --------->ICU4      <---------YAB1                   --------->GLK1(1)       <---------ATHB12   --------->AHL20(2)                   <------------CBF    --------->LBD16       <---------ICU4                  --------->ARR14(2)  --------->ANAC46      <---------YAB1                  <---------ARR14(2) <---------LBD16        --------->ICU4                       <<<< ----------->GT1--------->LBD16    <-----------GT1  <---------ANAC58                 --------->YAB1-- --->CBF      <---------LBD16    <---------WOX13(1) <---------ANAC58           <---------YAB1   -----   aaactgtagaaactaaaccggaattgctcggtttgattaaccggaatcatgaaggcgagcacattattataacttataagtatgttagcataagtgttta  11858600                                                                                           --------->TOE2(3)                                                                                           --------->TOE1(3)                                                                                         --------->ARR11(3)           --------->YAB1                                                           <---------ANAC58           <---------ICU4                                                           <---------ANAC46        --------->YAB1                                                              <---------ANAC58       <---------AHL20(2)                                                        <---------WOX13(1)      --------->AHL20(1)                                                       --------->ATHB12      <---------AHL20(1)                                                       <---------ICU4      --------->AHL20(2)                                       ---------->DOF2 <--------ATHB1    ------->TEIL                                              --------->YAB1  --------->ICU4 <---------YAB1                      <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------TOE2(3)  <---------ARR11(3) <<<<<RAP2.2                        <---------ALFIN1       --------->WOX13(1) <---------YAB1 ------->CCA1(2)                  <---------ALFIN1       <<<<<<<<<GATA-1   ------------>ATHB5 ------>ARR10       --------->AHL20(2)             <---------AHL20(2) <---------TOE1(3) <---------CCA1(2)   gatatgaatataatcaccacaattacatttagacatccacactcttcttgtttttatttatctatcaaagttaaggtagaatgattgcttaaatcttaaa  11858700                                                       ------>ZmHOX2a(2)                                                      <<<<<<<<<GATA-2                                                      <<<<<<<<<GATA-1                                                --------->YAB1                      <---------YAB1         --------->WOX13(1)                <---------ICU4             <---------YAB1                                         <--                <--------ATHB1         <----------DOF2<------ZmHOX2a(2)                           <--                --------->ATHB51    <---------ARR11(3)<<<<<<<<<GATA-4                            ----                <---------AHL20(2)  --------->ARR11(3)<<<<<<<<<GATA-3                           <----               --------->ICU4       --------->GLK1(2)<---------ARR11(3)             ---------->DOF2          --------->TOE2(3)        --------->RVE1(1) <---------AGP1                <---------AHL20(2) ----------->GT1--------->AHL20(2) --------->CCA1(1) --------->ARR11(3)  ---------->ID1       -------   aatgagttaaattcttaataatttgttattgaacaaaaaatctttatcattcatagatctctatgaaatgtttttgttgttatatataaagagtatcaat  11858800                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             ----------->GT1                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------------AGL15                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->TOE1(3)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------------->AGL15                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->TOE2(3)                                   <------------------------ANAC81           <-----------------AGL3                                  <---------AHL20(2)                         ----------------->AGL1                                 <---------AHL20(2)                          ----------------->AGL3         <---------GLK1(2)       <---------AHL20(1)                          ----------------->AG  <---------At4g35610         --------->AHL20(2)                             <-----------------AG  --------->At4g35610        --------->AHL20(2)                              <-----------------AGL1 ---------TGA1               <---------ATHB12                       <---------AHL20(2) ---------HVH21              <---------ATHB51                   <---------AHL20(2)  --------->DAG2 ----->YAB1                  <---------AHL20(2)                 --------->AHL20(2)---------->DOF2---- -----ATHB12          --------->AtLEC2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ----------------->AGL2 -->WOX13(1)       <-------TEIL  --------->AHL20(2)      <-----------GT1  ---------->ID1     <-------   cgtcatctaaatattctcaagttcatgccaaataattttttttttttttttttttttttttgccaaataaatatttgttcccttaaaaggttatttatcc  11858900  Previous    Next  AGI:  At2g27800.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G27300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41807.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11856866    to: 11858440    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version