Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->ZAT14                                             ----------                           --------->ANAC58                                              ------->GAMYB                           --------->ANAC58                                            --------->ANAC58                          <---------ZAT14                                              --------->ANAC58 -----ZmHOX2a(1)          <---------ZAT18                       --------->KAN4(2)    --------->MYB46(3) ------>ANAC58          --------->ZAT14                        <---------KAN4(1)   --------->AtMYB61 ------>ANAC46          --------->ZAT18                      --------->YAB1 <------ZmHOX2a(2)  ------ ------>ANAC58          <---------ZAT18                    --------->ICU4  <---------ARR11(3) <------ --WRI1   ---------->DOF2 --------->ZAT18                  <---------YAB1  --------->ARR11(3) -------   aggaaacaaaaaaaaagagtatcaagagcacactactcactcttcaacttctccataagtcatgaataatctcatgagatcatcaccacaacccaaagct  11856200                   --------->ARR14(2)                   ------->TEIL                   <---------ARR14(2)                  <---------CCA1(2)      <---------ANAC58                                 --------->ATHB51      <---------ANAC58                                 <------------ATHB5      --------->ANAC55(2)                 <-------TEIL --------->ATHB12      <---------ANAC46                 ----------->GT1 <--------ATHB1      <---------ANAC55(1)             <---------------AtSPL8       ---------->DOF2     --------------->AtSPL8     ------>MYB46(1)        --------->YAB1              ----------->GT1     --------------->AtSPL3     ------>MYB83           <---------ICU4            ---------->DOF2 >DOF2<---------ANAC55(2)      ----------->RAV1(1)     -------->ATHB1--------->ANAC58 --->TOE1(2)    --------->ANAC55(2)   --------->DAG2  --------->ICU4 --------->ANAC58     --------->MYB52(1) ---ZAT2        <---------ANAC55(2) ---------->DOF2   <---------ATHB12       <----------ID1    ------ -->ZAT2      --------->YAB1 --------->MYB46(3)       <---------ATHB51<---------------------WRI1   gggacattacgtactatcatgtatctgaaaaaccaacaaaaaggttcaaaatttcaataattgagcccagaaagcaagaagaacaaagtaaaaaacagac  11856300                              ----------->RAV1(2)                            --------->MYB46(3)                          --------->MYB52(1)                                                    <----                          --------->ARR14(2)                                           <----------ID1                          <---------ARR14(2)                                         ---------->DOF2                       --------->TOE2(3)                                          --------->ANAC58   <-------TEIL        --------->TOE1(3)    <----------DOF2                       --------->ANAC46 --->ARR11(3) ----------->GT1 --------->At4g35610                                 --------->ANAC58   cttgattcatcgcaaactgtataaaccctaaccgctggggtttcatctttgtatcgacccatcttctccaattctgagacgaacacgaaaagacaaaact  11856400         <---------DOF5.7(2)        --------->ANAC46       --------->DOF5.7(2)          --------->ANAC58     <---------ANAC58               --------->ANAC58                                          -------     <---------ANAC58             ---------->DOF2                                             -------    --------->ZAT18     --------->LBD16                                        --------->GLK1(1)    <---------ZAT18    --------->HSFB2a(2)              --------->TOE2(3)      <---------GLK1(1)    <-------TEIL       <---------HSFB2a(2)           --------->WOX13(1)       --------->ARR11(3) ------DOF2           <---------LBD16       <-----------GT1                   <---------ARR11(3) <---   tttaagtgcgttcacgtttagtttcccagaaaatttcaaagcaatttcacaaaatcaatctcagtaagtctggaatattagatatcccaaacaaaaccct  11856500                                                          <------NtERF2                                                         --------->LBD16                                                        --------->DEAR3(1)                                                        <---------ANAC46                                                        <---------LBD16                                                       --------->ATERF1(1)                                                       <------NtERF2                                                       <---------LBD16                                                      ------>NtERF2                                                      <---------RAP2.3(1)                                                     --------->ETT(2)                                                   <-----------HVH21                                                  <-----------RAV1(1)                                                <---------GLK1(2)                                               <------NtERF2       ----------->GT1                        --------->LBD16     <---------ARR14(2)   --------->MYB52(1) --------->LBD16        --------->YAB1 -->TOE1(3)             <---------MYB52(2)  <---------LBD16  <---------ARR14(2) -->TOE2(3)       >>>>>>>>>GATA-1       <-----------HVH21------>NtERF2--------->At4g35610         --- ------ICU4     ----------->GT1       <---------DAG2 <---------DEAR3(1)             *TSS      -------   aattgcagatagtaaaaatagataaaacaaacgtcgagtacctttcgccggaatgtcgccggggattcaataagcagagacgacgagatgaagaataaaa  11856600                              --------->ANAC58                              --------->ANAC58                             --------->RAP2.6(3)        ------->GAMYB                    --------->AHL20(2)                  --------->ANAC46                 <---------AHL20(2)                     --------->DREB2C(2)                 --------->AHL20(2)                    --------->MYB46(3)                <---------AHL20(2)                   --------->MYB52(1)                --------->AHL20(2)         <---------TOE1(3)                <---------AHL20(1)        <-----------GT1<---------DDF1         <---------HSFB2a(2) --------->SPL7<---------TOE2(3)      <----------DOF2<---------AHL20(2)<----------DOF2 --------->DEAR3(2)       --------->YAB1      - ------->DOF2   --------->AHL20(1) <------NtERF2 ----------->GT1               <------ZmHOX2a(2)  --- --->DOF2--------->HSFB2a(2)--------->MYB52(1)  --------->DAG2       <-----------GT1   <----------DOF2   gaaagaagcttttagaaatttatttaatccgaacggcatcgttttaacgaaaggttaaccgacatcggtttttacagaccgatcatatacttttagttta  11856700               --------->MYB52(1)                                                     ---------->DOF2              <---------AHL20(2)                                                   --------->TOE1(3)             --------->AHL20(2)                             --------->At5g28300    --------->TOE2(3)     ----------->GT1                                      --------->ZAT6           --------->YAB1 <---------WRKY18(1)                <------ZmHOX2a(1)    <---------At5g28300      <---------YAB1 ---------->HVH21                 <---------TOE2(3)     <-----------GT1    <-----------GT1 -------->RAV1(2)          ----------->RAV1(1) <---------ARR14(2)        <---------AHL20(2)   ccctgaccggttcaaattaatggcaattgcaacattgaggagaatagaagaactgaatttacagtaactcactattttttcattaccataaaccaaaaac  11856800                                                                       <---------ANAC58          ----                                                                       <---------ANAC58         <----                                            --------->YAB1     <---------HSFB2a(2)        --------->ANAC58                                 --------->AHL20(2)            --------->HSFB2a(2)        --------->ANAC58                               --------->ANAC58          <---------ARR11(3)           --------->YAB1                               --------->ANAC46          --------->ARR11(3)       --------->KAN4(1)       --------->GLK1(1)       --------->ANAC58    --------------->AtSPL8        <---------KAN4(2)   aataaacagatttcatctaaatttcgacaatacaagaaaataagaaacatcattttgtacatcttctataaatccttgtgaagaacattcacaagcttat  11856900                                           --------->MYB46(3)                                         ----------->RAV1(1)                                   --------->ARR11(3)                                   <---------ARR11(3)       --------->YAB1                                  --------->REM1(1)        <---------YAB1    --------->GLK1(2)           ----------->RAV1(1)      --------->REM1(1)   <---------GLK1(2)         --------->ANAC58        <---------DEAR3(2)      --------->REM1(1) <----- ----->YAB1                  --------->ANAC46      ---------->ID1          ------>ZmHOX2a(1)   ------ -----YAB1   --------->ANAC46--------->ANAC58     <-----------HVH21   <----------DOF2         <------   cataagaatctctatccacaagctgtttctctcgcaacatctccaacaatctcgtcgcttcatcatacttccctttcctacaactctcatcaactagtgt  11857000                      --------->ANAC58                      --------->ANAC58                      --------->ANAC46                    --------->ANAC46                  --------->AtMYB61                  ------->GAMYB            ----------->RAV1(1)                  <---------ALFIN1    <---------At4g35610                 --------->MYB46(3)   --------->At4g35610         --------->WOX13(1)                -------->P          --------->YAB1      --------->ANAC46      ---------->CDC5         --------->AHL20(2)         <---------ICU4    <-----------GT1        ---------->DOF2 ----ZAT18     --------->WOX13(1)  <---------ATHB12  --------->ZAT14        <----------CDC5 --->ZAT18     <-----------GT1   --------->WOX13(1)  <---------ZAT14    <---------At5g28300 ---ZAT6 <---------AHL20(2)   --------->TOE2(3)  <---------ICU4--------->TOE2(3)     ---------->DOF2   tctatagctaataaaatcaaccacacgaccattctcaatcatctcccacaaacatttcactgcatcgtcaatctcaccgctaagcgcaaaagcattaacc  11857100  Previous    Next  AGI:  At2g27790.1    Description:  nucleic acid binding / nucleotide binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G27300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66100.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 11854259    to: 11856584    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27800.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G27300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41807.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11856866    to: 11858440    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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