Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <------ZmHOX2a(2)      --------->ARR11(3)      --------->ARR14(2)      <---------ARR11(3)      <---------ARR14(2)                                                      ---------->ID1    ----------->ARR10                                                --------->RAP2.6(3) ---->TOE1(3)                                                 <---------At4g35610 ---->YAB1------>ZmHOX2a(1)                          ------>ZmHOX2a(1)<---------RAP2.6(2) ---->TOE2(3)                         --------->TOE2(2)       --------->At4g35610                 --- ----GT1------>ZmHOX2a(2)            ----------->RAV1(2)  <---------YAB1  <----------DOF2       -----   ataagtaagatccttcacaacctcttcaaaaacattcaaacctgagtctctcttcctcttattcttctgaagacggctttgtctcatcttctcaaatgta  11831500                                                                                           --------->AHL20(2)                                                                                           <---------AHL20(2)                                                                                          <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                                      <---------YAB1                                                   <------ZmHOX2a(2)                 --------->AHL20(2)                                                  --------->ARR11(3)                 <---------AHL20(1)                                      --------->ARR14(2)                             --------->AHL20(1)                                      <---------ARR14(2)       <----------DOF2      --------->YAB1                                     --------->GLK1(1)         <---------DAG2   ----------->TBP      --------->AtLEC2               <---------GLK1(1)      ---------->ID1    <---------HSFB2a(2) ------>YAB1                        <---------ARR11(3)     <-----------GT1    --------->HSFB2a(2) -->TEIL                          <---------YAB1  <---------ARR11(3)     ---------->ID1   --------->AHL20(2)   tcatcttcttgcaaactaagaaacttaggcttcttcatgatatccgattcaagatcaagtttctcctttttttttgtcttctacaaatataatttaaaaa  11831600                              <---------ZAT14                              --------->ZAT14                                                      <-                         <---------ANAC58                                                          --                         <---------ANAC58                                            ---------->DOF2                     <---------MYB52(1)      --------->ANAC58                      --------->TOE2(3)-        --------->YAB1   <---------ANAC46    --------->ANAC58               --------->TOE1(3)      --   ------------>CBF<---------ANAC58    --------->ALFIN1                     --------->TOE2(3)     ---  --------->YAB1   <---------ANAC58  <---------ANAC46              <---------HSFB2a(2)    <----------DOF2   acagtcacaatcagaacattttcgtttgcttgtgtagtcaagtgtagaagccaagaagacacaagagttgcagaaaaaccctaaacctaaagctttgagc  11831700       ----------->GT1      --------->DAG2           <---------AHL20(2)      ------------------------>ANAC81     ---------->DOF2          --------->AHL20(2)    ---------->DOF2        --------->AHL20(1)  --------->AtMYB61        <---------AHL20(2) --------->ANAC55(1) --------ALFIN1            <---------AHL20(1) --------->ANAC58                                    <-- ------->AtMYB61           --------->AHL20(2) --------->ANAC55(2)                           <-------- ---------->RAV1(1)       --------->AHL20(2)  --------->ANAC46  --------->ATHB12            --------- ------->DEAR3(1)     <------ZmHOX2a(1)       --------->ANAC58 <---------YAB1    --------->YAB1------ ------>MYB46(3)     ----------->GT1          <---------ANAC55(2)        <----------DOF2<-----------HVH21   accaccaaaaggcaaaaaacaagaggaaataaatttatagcgaataacacgtattgggctaagttttcattgggcctttcaaataatagatgtcaagtat  11831800                                                                                                    <                                                                                                  <--         --------->AtMYB61                                                                        <--       >>>>>>>>>MYB2                                                        --------->LBD16      ---- -------MYB46(3)                                  ------->TEIL              ----------->GT1      <--- -ANAC55(2)                                     --------->LBD16            *TSS  <---------YAB1  ---- >ANAC55(2)            <------------CBF     <-----------GT1               <---------LBD16       ----- --->MYB52(1)   ---------->DOF2      ----------->GT1<---------MYB59  --------->ZAT14 ----------->GT1-   cggttagaaaaccaaaaccaaagtgaattgaaaacgatttagttataaaccggacctatttttgttctctgtttactccggttaaaattgataaatcggt  11831900 <---------ANAC46 ------NtERF2 -------RAP2.6(2)                                             --------->ARR14(2) -------DEAR3(1)                                              <---------ARR14(2) ----->SPL7                             ----------->GT1      <------NtERF2                         <- ------ABI4(1)                     --------->YAB1          <---------ANAC46                       --- ----->ABI4(2)                    --------->ICU4   --------->ANAC58                               <-- ---->ALFIN1           --------->CCA1(2)<---------YAB1    <---------LBD16                     <------ ----->NtERF2         <----------ID1 <---------YAB1--------->ANAC58                 >>>>>>>>>TBF1----   gcggcgaagagagagagagagagagagacgaaggcgatgatgatgttaaaccctagcaatggcggaatcgagggagagaagatgaagaagaaggcgaagg  11832000                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                        --------->ANAC58                                  ---------->DOF2                                       --------->ANAC46      --------->ICU4          --------->GLK1(1)         <------NtERF2                   --------->ANAC58      <---------YAB1     <---------HSFB2a(2)          <---------ANAC58                 <------NtERF2    --------->YAB1       --------->HSFB2a(2)         ---------->ID1  --------->ALFIN1 ------>NtERF2--   <---------YAB1     <---------ARR14(2)       --------->ATHB12    --------->LBD16    <---------ATERF1(1) ------GAMYB          --------->GLK1(2)      <---------MYB52(1)  <---------LBD16     --------->DEAR3(1) ------>MYB55(2)      --------->ARR14(2)    <-------GAMYB     <----------DOF2       --------->RAP2.3(1) -------MYB46(3)     <---------GLK1(2)<---------ANAC58<---------ANAC58     <---------YAB1         <-- ---AtMYB61 <---------PCF2--------->LBD16  <---------ANAC46   <---------DAG2  <---------YAB1      --- ----->ALFIN1   ----------->RAV1(1)   <---------ANAC58<---------ANAC46     --------->ICU4    --------   tggttgtgataatgggtccaacaggttctgggaaatcaaagcttgccgttgatttggcgtctcactttccggtggagattattaacgccgacgcaatgca  11832100                                                                              <---------AHL20(2)                                                                              <---------AHL20(1) -------ARR14(2)                                                              --------->AHL20(2) ------>ARR11(3)                                                              --------->AHL20(1) -------ARR11(3)                    --------->DEAR3(1)                 ----------->GT1 ------->CCA1(2)             --------->DAG2                        <---------ARR11(3) ---------ARR10             ---------->DOF2        <---------TOE2(3) ------>ZmHOX2a(2) ------>ARR14(2)           <---------ATHB12      ---------->DOF2   --------->ARR11(3)             <-- ->AtLEC2  <---------HSFB2a(2)    <---------At5g28300         <---------ARR14(2)            <--------   gatatactctggtctcgacgttctcaccaataaagtcaccgtcgatgaacaaaaaggtttggaagttctgatcttgtaaatttattgtagatagagatga  11832200                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                             <-------                                                                                        --------->SPL7                                                                                      ----------->HVH21    <-----------HVH21                                                             <---------ANAC58 <---------ANAC58                                                               <---------AHL20(2) <---------ANAC58            <----------DOF2                                <---------ICU4 <--------- --------DOF2         --------->ATHB12 <---------TOE2(3)                   <---------YAB1<---------DEAR3(1) -At4g35610          --------->ICU4  <---------AHL20(2)          <------ZmHOX2a(1)<---------ANAC58 --   ctttggtgtcagtgtaattggaattgattagctttgtttttaatgtgattttgggaatttgtgtttaggagtgcctcatcatttacttgggacggtgagc  11832300  --------->CCA1(2) --------->ARR11(3)    <---------HSFB2a(1) --------->ARR14(2)    --------->GLK1(1) <---------ARR14(2)    <---------GLK1(1) --->ZAT2 --------->ZAT18 ----ZAT2 --------->ZAT14 --->At4g35610 --------->ZAT2     --------->ZAT18 ----At4g35610 <---------ZAT2     <---------ZAT14                        <XXXXXXXXXXXXXXXXXXXXMIR829.2 --ZAT18  <---------ZAT14         --------->ZAT14           <-----------GT1 --HVH21<---------GLK1(1)   --------->HSFB2a(2)         --------->AHL20(2) --------->ARR10      --------->ARR14(2)    ------>ZmHOX2a(1)      <----------DOF2    <---------DAG2   tcagatatggagttcacagctagggattttcgagacttcactgttcctgtgagtacaaatttatacctccttttgttttgaagtttcaatttttgttttt  11832400  Previous    Next  AGI:  At2g27750.1    Description:  nucleolar matrix protein-related. similar to nucleolar matrix protein-related [Arabidopsis thaliana] (TAIR:AT5G05210.1); similar to nucleolar matrix protein-related [Arabidopsis thaliana] (TAIR:AT5G05210.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO71497.1); contains InterPro domain Surfeit locus 6 (InterPro:IPR007019) Range:  from: 11830993    to: 11831538    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27760.1    Description:  ATIPT2 (TRNA ISOPENTENYLTRANSFERASE). similar to ATIPT5 (Arabidopsis thaliana isopentenyltransferase 5), transferase, transferring alkyl or aryl (other than methyl) groups [Arabidopsis thaliana] (TAIR:AT5G19040.1); similar to tRNA isopentenyltransferase [Lotus japonicus] (GB:ABW77761.1); similar to putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] (GB:AAS79605.1); contains InterPro domain tRNA isopentenyltransferase; (InterPro:IPR002627); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Isopentenyl transferase-like; (InterPro:IPR011593) Range:  from: 11831875    to: 11834668    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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