Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->AHL20(2)                 <---------AHL20(2)                  ---------->DOF2                <---------TOE2(3)      <-----------RAV1(1)                 --------->REM1(1)                         <---------TOE1(3)    <----------DOF2                       <---------YAB1       <-----------GT1<---------TOE2(3)   aatgttctttgttgcaagtttaattttggtcactattttttgctacaattgcattcaaagtagatttactaatttgtgttgatgttaaggtttgtttttg  11787700                                    --------->ANAC58                                    --------->ANAC58                                             ----                            <-------TEIL                  <----------DOF2                    <-------                           <--------P               --------->WRKY18(1)                   --------->ARR14(2) --------->AHL20(2)     <---------TOE2(3)      --------->YAB1                    <---------AHL20(2) < --------->YAB1         <---------TOE1(3)     <---------YAB1        <-----------GT1  <-----------GT1-   aaataatatttctagtttgttttcttaaggttgataacaagaaaacttatcatggtcatgctttatattgtcactatttgaattttttttcaaatttgcc  11787800                         <---------AHL20(2)                        --------->AHL20(1)                        <---------AHL20(2)                        --------->AHL20(2)             --------------->AtSPL8   --------->YAB1       <---------ARR11(3)                                                  <-------- -->NtERF2--------->ARR11(3)                               <---------ANAC46             --------->AHL20(2) ----GT1 <------ZmHOX2a(1)     <---------AtLEC2   ------->TEIL                       <---------DAG2 ---------------AGL15   --------->ARR11(3)       <---------CCA1(2)              <---------At4g35610 ----->ZmHOX2a(1)       <---------AHL20(1)    <---------TOE2(3)    <---------AHL20(2)<----------DOF2   tcctattagaaggaccttgtacttaatatatttgaatggtgggattttgatgtatctctctacgtggatttttttgtttttcttctgctttttaatacaa  11787900                               --------->ATHB51                               -------->ATHB1                               <---------ICU4                               --------->ATHB12                        <---------ARR14(2)                              <---------ATHB51                    --------->ANAC58                              --------->AHL20(1)                  --------->ANAC58                              <---------AHL20(2)             <----------ID1                              --------->ICU4                --------->RAP2.6(3)     --------->YAB1                    <---------AHL20(2)                     --------->MYB52(1)    --------->WOX13(1)      <----------DOF2         <---------YAB1           --------->AHL20(2)      <---------YAB1 ---GT1            --------->AHL20(2)                  <---------AHL20(2)   <---------MYB52(1)   tttgttttctttttcaaaccatttaatacaaaattattggaaaaaataagcatatattaaaaaacggcaagcgttttcgttatcattcatcaaaacattg  11788000                                                            --------->At4g35610                                                            <---------At4g35610                                                      --------->ANAC58                                                      --------->ANAC58                                                      --------->ANAC46                                                     ------>MYB46(1)                                                     ------>MYB83                                                   --------->TOE1(2)                                                   --------->AtMYB61                                                  --------->MYB46(3)                                                 -------->P --------->LBD16                                                 ------>MYB83<---------MYB52(1)                                                 ------>MYB46(1)                                                --------->MYB55(1)                                 <---------MYB52(1)--------->TOE2(2)                            <---------ALFIN1   <---------MYB111(1)                           ----------->HVH21   --------->AtMYB61                       ---------->ID1                       --------->ANAC58        <---------MYB59                ---------->ID1                       --------->ANAC46        <---------MYB111(2)         <----------DOF2                       --------->ANAC58        <---------MYB46(2)         <---------DAG2 <-----------HVH21                 --------->HSFB2a(2)           --------->MYB46(3)       <---------ARR11(3)                 <---------HSFB2a(2)          --------->MYB46(3)        --------->ARR11(3)   agccaattcttcacaacttccaaaaacgcctcaccgtttcattcttctaccaacctacgctccgctgttttcaagaccttttcgtcttcgtcgtcaaatc  11788100                                                                 ================================HOX2a_HOX2a                                                                 ------>ZmHOX2a(2)           --------                                                                =================================HOX2a_HOX2a                                                                <------ZmHOX2a(2)         ------>ZmHOX2a(1)                                                               <---------ARR14(2)   --------->HSFC1(2)                                                               --------->ARR14(2)   <---------HSFC1(2)                                                               <---------ARR11(3)   --------->HSFB2a(1)                                                               --------->ARR11(3)   <---------HSFB2a(1)                                                           ------>ZmHOX2a(1)       --------->ARR14(2)                                                           =============HOX2a_HOX2a<---------ARR14(2)     <-----------GT1                                   =================HOX2a_HOX2a--------->GLK1(2) <---------DAG2*TSS                                    ================HOX2a_HOX2a<---------GLK1(2) <----------DOF2<----------DOF2                        ------>ZmHOX2a(1)<-----------------AGL1   tagcttttttcttcatcgctttgcataatccattccttcttctctcttctccatctccttcctccgatcttcgtctccaattcggaatcttcctatcaca  11788200                       --------->YAB1                                                              <-                       <---------ICU4            --------->YAB1                            --------->TOE1(3)             <-----------GT1         <---------ATHB12                              ----------->GT1 <- ->YAB1   <----------DOF2          --------->WOX13(1)               <---------GLK1(2)      --------->TOE2(3)   atttcaaggctcctttaacccttgatcatcaccgattcaatcaattcggaatcacaatttcaaatcgagagaatttcaatttctcttgtaaaaccctaaa  11788300                                     ---------->DOF2                                  <---------ANAC58                                  <---------ANAC46                             <---------------AtSPL3                           <------ZmHOX2a(2)                      --------->ANAC46           <-------TEIL                      --------->ANAC58        <---------MYB46(3)               --------->ANAC58   <---------ANAC58               --------->ANAC58   <---------ANAC55(2)                             <----------DOF2               --------->ANAC46   --------->ANAC55(2)                        ---------->DOF2 --------------AtSPL8 --------->ANAC58 --------->ANAC58                  <---------YAB1            -- --------------AtSPL3--------->TOE1(2) --------->ANAC58                --------->YAB1             ---   ttatgtacagcaatttcaaggaacaagcgatcgagtacgtgaagcaagcggttcatgaagacaatgctgggaattacaataaagctttccctctatacat  11788400                                                                                              -------                                                                                              <------                                                                                              <------                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                         <-----------HVH21                                                                                    <---------GLK1(1)                                                                                   <---------ARR11(3)                                                                                   <---------ARR14(2)                                                         --------->GLK1(2)         --------->ARR14(2)                                                         --------->ANAC58          <-----------ARR10                                                         --------->ANAC58         <---------CCA1(2) <     <----------DOF2                              <------ZmHOX2a(2)         <---------At5g28300<----- ----->TEIL             --------->At4g35610      <---------ARR11(3)        <-----------GT1<---------MYB52(1) ------->DOF2           <---------At4g35610      --------->ARR11(3) --------->LBD16--------->ARR11(3)   gaacgcgcttgagtacttcaaaactcatctcaagtatgagaagaaccctaagatcagagaagctattacccagaaattcaccgagtatctccgtcgtgct  11788500      <---------ANAC58      <---------ANAC46      --------->ANAC55(2)      <---------ANAC58     <-------TEIL                           ----------->HVH21     ------>ZmHOX2a(2)                     ------>ZmHOX2a(2)    --------->CCA1(2)                    --------->ARR11(3)    <------ZmHOX2a(2)                    <---------ARR11(3)   <---------ARR11(3)                    <-----------ARR10   <------NtERF2   --------->ARR14(2)                    --------->ARR14(2) <---------ATERF1(1)   <---------ARR14(2)                    <---------ARR14(2) <-----------HVH21   --------->ARR11(3)                    <---------AGP1   --------->RAP2.3(1)  <---------GLK1(1)            ------>ZmHOX2a(2)         --------->At4g35610  --------->GLK1(1)            ================HOX2a_HOX2a--------->ATERF1(1) ----------->ARR10           <---------ARR14(2)      <---------REM1(1) -->ZAT2                     --------->ARR14(2)   --------->ALFIN1 ---At4g35610              <---------MYB46(3)--------->MYB52(1) ---ZAT2        <---------HSFB2a(2)     <------ZmHOX2a(1)------>NtERF2 ------>NtERF2 ------ZmHOX2a(1)         --------->ALFIN1<------ZmHOX2a(2)--------->DEAR3(1)                     --- -----CDC5      --------->HSFB2a(2)  <-----------RAV1(2) <---------At4g35610           ---------->DOF2   gaggagatccgtgctgttctcgatgaaggtggatcgggtccaggatctaacggtgatgcagccgtcgcaacgaggcccaaaactaagcctaaagatggag  11788600  Previous    Next  AGI:  At2g27600.1    Description:  SKD1/VPS4; ATP binding. similar to ERH3 (ECTOPIC ROOT HAIR 3), ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G80350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22301.1); similar to salt-induced AAA-Type ATPase [Mesembryanthemum crystallinum] (GB:AAF21428.2); similar to hypothetical protein OsJ_000308 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10483.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain MIT (InterPro:IPR007330); contains InterPro domain Vps4 oligomerisation, C-terminal (InterPro:IPR015415); contains InterPro d Range:  from: 11788115    to: 11791069    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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