Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->ANAC58                                                                                 --------->DAG2                                                                                ---------->DOF2                                                                             <---------ANAC55(2)                                                                            --------->MYB59                                                                        ------>MYB83 --------->WOX13(1)                                                                        ------>MYB46(1)                       ------->GAMYB                                  <---------------AGL15                      --------->MYB46(3)                              --------------->AGL15                 --------->HSFB2a(2)                                 ----------------->AGL1   <------             <---------ANAC58        --------->At4g35610             <-----------------AGL1 <--------             <---------ANAC58        <---------At4g35610             ----------------->AG   <-------- ---GT1<---------MYB52(1)   <---------ALFIN1                       <-----------GT1--------->ANAC58  <   ttgatagtcgttatggcttctctaacagcctcactctgaagcttactatataacaaaaacaaacccatttcaccaaatcaggtaaagcaatctactttac  11771500                                                        --------->ANAC46                                                     ---------->DOF2                                                   >>>>>>>>>RAP2.2 --------->ATHB12                               --------->WOX13(1)       --------->ANAC58 -----GT1             <-------GAMYB           <---------ATHB12           --------->ANAC58 -DAG2         <---------YAB1            --------->ANAC46              ---------->DOF2 --DOF2      --------->CCA1(2)           --------->ANAC58    --------->ZAT6 ---------ATHB12     <-----------RAV1(1) --------->ANAC58  ----------->RAV1(1)           <------ZmHOX2a(2)   cattcatttgaaatgatatgattctgttgagcaattactctccaagctatcaatctaaaggcaacactaattctaaagcaagtgaacatagatcaatatg  11771600                                                                    ------->TEIL                                                                   <---------GLK1(2)                                                                 --------->ANAC58                                                             <-----------HVH21 ======================                                                            --------->At4g35610--------->LBD16                                                            --------->TGA1a  ------>ZmHOX2a(2)                                                    ----------------------->TaNAC69(2)                      --------->ATHB12             <-----------ARR10--------->GLK1(2)               --------->DAG2    --------------->AtSPL8     <---------At4g35610------>ZmHOX2a(1)              ---------->DOF2    --------->ZAT6 <---------ANAC58 <---------ANAC55(2)           <---------ANAC46    <-----------GT1  <---------ANAC58 --------->ANAC58    ---------->DOF2  --------->ICU4             <---------ANAC46 --------->ANAC55(2)           <-----   gagattgaaagaagcgtaaaggaatgatttttttcacagtacctcatattgagtgtcttctcaggtcacgaatctctgatcctgaaaacaataagagatc  11771700                                                                  ----------->GT1       <----------ID1                                      <------ZmHOX2a(1)       ----------->GT1                                    ----------->GT1     ---------->DOF2                                    <-----------RAV1(2) =HOX2a_HOX2a                                       ---------->DOF2                                <- -ZmHOX2a(2)         --------->TOE2(3)      <---------GLK1(1)  --------->GLK1(1)      <---------YAB1   gattagaaaaagaaaaaaaaaaacctcattttcgattgtgacatagaattcagattaagcaggagaaatcgaaaaacttcatggaattacgatgaacgaa  11771800                                                                                                <----                                                                                               ------                                                                                             <-------                                                                                      <---------At4g35610                                                                                      <-------GAMYB                                                                                      --------->At4g35610                                                                                      <------NtERF2                                                                                     <---------RAP2.3(1)                                                                                     <---------ATERF1(1)                                                                                     <---------ERF1                                                                                     ------>NtERF2                                                                                    <---------RAP2.6(2)                                                                                    <---------DEAR3(1)                                                         --------->At4g35610        <---------RAP2.3(2)              ----------->TGA1                        ---------->DOF2    <---------YAB1      --------  --------->ANAC58                       --------->TOE1(3)    --------->ANAC58      <---------RAP2.3(3)  --------->ANAC58  <---------YAB1       --------->TOE2(3)   --------->SPL7        --------->ATERF1(1) ---------ID1 ----------->HVH21  <----------ID1----------->GT1--------->ANAC58  <---------At4g35610   gaagacgaaatgagaagtgacgatgtttgtggagagagacaaacctgaatggtgaagaaagcggaagccctagttatgtttcagaggcggctgaagattt  11771900                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               <-----          >>>>>>>>>TBF1                                                                 <---------ANAC46    --------->ANAC58                                                                   <------NtERF2    <---------TOE2(3)                                  <---------ANAC58              <---------RAP2.6(2)    --------->ANAC58                                   <---------ANAC58             <---------PCF2 -----AHL20(2)                                    --------->ATHB12                  --------->PCF5 --->AHL20(2)                                  <------------CBF                    <---------PCF5 --ARR11(3)           *TSS              <---------STY1(1)                  <---------YAB1      ------ ->ARR11(3)----------->GT1              --------->STY1(1)          <----------DOF2--------->ZAT18 <--   tatatcaaggaagaagaaaaatggaaggaagagactaaaaccctaggggaattgatttcgtttcatgggcttttgttatattagtgggccgcttgtgatc  11772000                                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ---------->DOF2                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---->YAB1                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----HAHB4                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----ICU4                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----YAB1                                       <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->ICU4                               ----------->GT1            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------YAB1          <------------CBF --------->DAG2              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   attactaaaaaagcccatcttctacattgtggtattttgaaaaggtttatttaagtatgttaagagtttttttttttttttttttttttttttttttttt  11772100                                --------->ANAC58                                --------->ANAC58                            --------->YAB1             ----------->GT1                            --------->TOE1(3)          <---------MYB46(3)                            --------->TOE2(3)      <---------ANAC46                 --------->ARR14(2)             <---------MYB52(1)  --------->ICU4 <---------ARR14(2)---------->DOF2 <---------YAB1         --------->ANAC46         --   gggaattagtgtgtgttcggattggactaatcttaagcaaagtaaacacagttgtgtttgttaaaatccaaattataggccatttcgcattagttttaat  11772200                                                <---------AHL20(2)                                             ------->TEIL                                          <---------ANAC46                                          --------->ANAC55(2)                                          <---------ANAC58                                          <---------ANAC58                 <---------At4g35610   ----------->HVH21            ------->TEIL             <---------ANAC58  ---------->DOF2--------->At4g35610 <---------ANAC58        --------->CCA1(2)             ---------- --------->RAV1(1)                   >>>>>>>>>>WRKY18     ----------->ARR10        <-----------GT1   ccaacaaagacatgaacttagctcatattgaaactcttgacttgacgtatttacatagatgagatttgatttgatcaattctatataactttcgaaagac  11772300                                                                                 --------->YAB1<-----                                   <----------DOF2 <---------ZAT14    ----------->GT1          ------                        ----------->RAV1(1)      <---------WOX13(1)  --------->DAG2        --------->ICU4                        <---------ALFIN1       --------->ATHB12     ---------->DOF2     <------ZmHOX2a(1)                     <-----------GT1xxxxxxxxxxxxxxxx>smallRNA(i) --------->YAB1  --------->AHL20(2) >DOF2       ----------->GT1---------->DOF2   <---------YAB1    <---------YAB1  <---------ATHB12-----   aataccctagttggatagaaaaatcaccacataagcgctttgaaaactgtgattgcagagaagtatatgataaagttattcaataatataggactaatta  11772400  Previous    Next  AGI:  At2g27530.1    Description:  60S ribosomal protein L10A (RPL10aB). Identical to 60S ribosomal protein L10a-2 (RPL10AB) [Arabidopsis Thaliana] (GB:P59230;GB:P53029;GB:Q9C5M4;GB:Q9SLF8); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar to Os02g0321900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046690.1); similar to unknown [Picea sitchensis] (GB:ABK22320.1); contains InterPro domain Ribosomal protein L1, 2-layer alpha/beta-sandwich; (InterPro:IPR016094); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) Range:  from: 11770298    to: 11771922    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27535.1    Description:  ribosomal protein L10A family protein. contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) Range:  from: 11772400    to: 11773221    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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