Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       ------>NtERF2   --------->At4g35610  <---------RAP2.3(1)  <---------ATERF1(1) <---------RAP2.3(2) ---------At4g35610 --->CCA1(2)                                         --------->At4g35610          <----------DOF2 -----ARR10                                     --------->ANAC46                 <---------ICU4 ---ARR11(3)                            --------->TOE1(3)             ---------->ID1      --------->YAB1 -->ARR11(3) --------->GLK1(2)          --------->TOE2(3)    --------->YAB1    ------->TEIL  --------   taagcggctccaaaaattctgaaaaatccatttcttctaatgccttaaacacatcatcagccttcatagtttgtcttcttgcatctttacaaaaatcatt  11753100                --------->LBD16               --------->ANAC46        --------->WOX13(1)      <---------YAB1                                                                         --------     <<<<<<<<<<GT-1   <---------AHL20(2)                                                    ---------     <---------ARR11(3)                          --------->YAB1         --------->YAB1     <---------TOE2(3)    <---------CCA1(2) --------->AHL20(2)        <------ZmHOX2a(2)      <-------TEIL        <---------YAB1 ->ATHB12   <---------At5g28300  --------->WOX13(1)           --------->ZAT6        --------->YAB1   tgccctatatcattcacccccaaattaaactaaatccatcaattcgatcgatcacaattcacaaacactaacattcatcaattgaatcacattaacataa  11753200                                                                                      <------NtERF2                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                                                 --------->ALFIN1                                                                                 ----------->HVH21                                                                               <---------ANAC58                                                                               <---------ANAC55(2)                                                                               --------->ANAC55(2)                                                                               --------->O2                                                                               <---------ANAC58                      --------->WOX13(1)                                       <---------TGA1a                    <---------ATHB12                                           --------->TGA1a            --------->KAN4(2)            --------->ARR14(2)             <---------ZAT18           --------->HSFC1(2)            <---------ARR14(2)             --------->ZAT18  <---------AtMYB61           --------->HSFB2a(1)       <---------ZAT18       <---------TOE2(3)   <---------O2           <---------KAN4(1)         --------->ZAT14       <---------TOE1(3)  <-------TEIL  ---------           --------->KAN4(1)         <---------ZAT14 --------->DAG2  <---------ANAC46--------->LBD16           <---------HSFC1(2)        --------->ZAT18=====================================bZIP_DOF ->TOE2(3) <---------HSFB2a(1) --------->YAB1       ---------->DOF2<---------ZAT14 <------NtERF2<---- >YAB1    <---------KAN4(2)   <---------YAB1  ----------->GT1      --------->ZAT14 <---------LBD16   acccaaacttggaacattccaaatcattcactatcatagtgcagaaattcgaaaaaaagttagggtttgtgaagtgtacatacgtggcggagaggtagtg  11753300                                                              <---------LBD16                                                      <-----------TGA1                            ---                                                     <---------O2                                ----                                                     <---------TGA1a                             <---                                                     --------->TGA2(1)                          <----                                                     <---------TGA2(1)                          -----                                                     <---------bZIP60(1)                        <----           <---------ALFIN1                          --------->bZIP60(1)                       ------      ------>ZmHOX2a(2)                --------------------->WRI1                              ------     <------ZmHOX2a(2)                 <---------ANAC58     --------->GLK1(2)    <---------GLK1(2)<--    <---------ARR14(3)                 <---------ANAC46   --------->ICU4        <---------At4g35610 -    --------->ARR14(2)                 <---------ANAC58--------->TGA2(2)        --------->At4g35610--    <-----------ARR10             --------->HSFC1(2) --------->TGA1a        ----------->RAV1(1)------    --------->ARR14(3)            <---------HSFC1(2) --------->O2           ------>NtERF2    --------    --------->ARR11(3)            --------->HSFB2a(1)--------->ANAC55(2)    =========================    <---------ARR11(3)         ---------->DOF2      ----------->STF1       <---------ETT(1)  --------    <---------GLK1(2)          ================================bZIP_DOF    ----------->HVH21 <-------    <---------ARR14(2)      --------->ANAC58        <-----------STF1  --------->ZAT6        ---------  ----------->ARR10         --------->ANAC58       <---------TGA2(2)  --------->HSFB2a(1) <---------- >ALFIN1------>ZmHOX2a(1) <---------ANAC58        ----------->TGA1    <---------ALFIN1<<<<<<<<<TBF1<- -----MYB46(3)            <---------ANAC58    <---------ARR14(2)--------->LBD16 <---------ZAT2-------   gatgaagatcctcgcactctctgagaatgcgagcaaagcttccttgtgaatactgacgtcataatccggcgaacactccgacagcttcttcttcaccacc  11753400 ------>NtERF2 <---------ZAT18 --------->ZAT18 ------>LBD16 ----->ANAC46 ------DEAR3(1) -----MYB55(2) ---->MYB46(3)                                                                         <---------DAG2 -----LBD16                                                                            <----------DOF2 ----->RAV1(2)                                                                      ------>NtERF2 >MYB46(1)                                                                          --------->LBD16 -------ATERF1(1)                                                                  --------->ANAC46 -------->DEAR3(1)           <---------ALFIN1                                     <---------LBD16 ------->RAP2.3(1) <---------At4g35610                                     ------>NtERF2<---------MYB52(1) >MYB83            <---------ZAT2                                         --------->DEAR3(1) ->DEAR3(1)        --------->ZAT2                                        --------->ATERF1(1) ======RAV         --------->At4g35610    ------>NtERF2                  <------NtERF2<----------DOF2 ->AtMYB61         <------NtERF2   <----------DOF2                       --------->DEAR4(2)       --- --ALFIN1<---------STY1(2)   --------->DEAR3(1)                          --------->RAP2.3(1)--------- >MYB46(3)      <------NtERF2--------->AtMYB61                          <---------RAP2.3(1) --------- -GT1    --------->STY1(2)  --------->MYB46(3)                          <---------ATERF1(1)<---------YAB1 -----NtERF2 --------->At4g35610   <---------DAG2                      <---------DEAR3(1)*TSS     --- -->ABI4(1) --------->MYB52(1)  <---------ALFIN1            ------>ZmHOX2a(1) <----------DOF2  ------   cggcgcacaatagctagcggcagctcgtccaccaccactttctccgactccattcttctctcctctctctcagtcgccgtctttcccgcctttatgttaa  11753500                                                                                                  ---                                                                                                  <--                                                   ---------->DOF2                                ---                                            <---------AHL20(1)                                   ----                                            --------->AHL20(1)                                 ------  <----------ID1                            <---------AHL20(2)                                ------- ----->HAHB4              <---------At4g35610    <---------AHL20(2)                           ------- >YAB1                    --------->At4g35610--------->AHL20(2)                               ------- >TOE2(3)                 <---------ZAT2 --------->AHL20(2)                    ---------->DOF2------- ------>YAB1            <---------ZAT14  <---------AHL20(2)              --------->ANAC58     ------- --->YAB1               --------->ZAT14 --------->YAB1                   --------->ANAC58   <--------   taatacaacaaaacacatcggcccagtaagctgatcagcctattaaaatatttaaaagcccatattcaagtttataagcactaaagagttatgaccacgc  11753600    <---------ICU4 ------>At4g35610 -------At4g35610 --->NtERF2 ----->DEAR3(1)                              --------------->AtSPL3 >NtERF2                                <------NtERF2 -->bZIP60(2)                          <-----------HVH21 -->ANAC58                    <---------ARR11(3)         <-----------ARR10                      <---- -->O2 <-----------GT1<---------WOX13(1)<---------------------WRI1                            ------- -->ANAC58          --------->ATHB12   <---------RAP2.6(3)--------->RAP2.6(3)          ---------->DOF2 -->ANAC46        <---------WOX13(1)  --------->RAP2.6(2)<---------ARR14(2)      --------->ANAC58 -ALFIN1     <---------MYB52(1)   ------>ZmHOX2a(1)      --------->ARR14(2)      --------->ANAC58   cgctcaatattacccgttggattgattgacaaaatcctagccgtcaaatcgtactagcaaatcggcccattattcaaattgataagcactaaagagttat  11753700                                                     ----------->GT1                                                ------------>CBF --------->AHL20(1)                                           <---------At5g28300   <---------AHL20(1)         --------->WOX13(1)          --------->ARR11(3)       --------->YAB1       ------------>CBF      <----------DOF2  <-----------HVH21  --------->AHL20(2)   <-------MYC3             --------->TOE2(3) --------->ORA47(1) <---------AHL20(2)   ------->MYC2             --------->TOE1(3)--------->DEAR3(1) --------->AHL20(2)    --------->YAB1   ------->MYC3      <---------MYB46(3)   <-----------GT1  --------->YAB1        --------->ANAC58   <-------MYC2    <---------MYB52(1)<---------ARR11(3)   --------->ZAT6         --------->ANAC58 *TSS -----YAB1        <-------GAMYB    <---------AHL20(2)--------->YAB1       --------->YAB1 <---------GLK1(2) -->CCA1(2)    <---------At5g28300--------->AHL20(2)<---------ATHB12     <------ZmHOX2a(2)--------->GLK1(2)   gagcacgttgtcaatctcaccgttggataacctttattaaatcttcaccgtccaatcgtaatactaataaattcgatcaaaacacgaataagaatcggag  11753800                                         --------->GLK1(2)                                        --------->ARR14(2)                        <---------ARR11(3)                        --------->ARR11(3)            --------->ANAC46           --------->HSFB2a(2)          <---------GLK1(2)                         <---------YAB1   --           <---------HSFB2a(2)          <---------ARR14(2)                     <---------YAB1      --          <---------LBD16         <-----------GT1<---------ARR14(2)<---------GLK1(2)               --       --------->MYB46(3)       <---------KAN4(2)--------->ARR14(2)<---------ICU4 <---------WOX13(1)   tcgtcttcaacctctggaatttgagacatcttcgaataaccagattctccgaattcgagccatttctaagaatttcatactctgattaatgtcttactca  11753900                          -------->P                          --------->MYB52(1)                   --------->DEAR3(1)                  --------->At4g35610                  <---------At4g35610                  <---------LBD16                  <------NtERF2                 ------>NtERF2                <---------ALFIN1               <------NtERF2                                                                     ----              <---------RAP2.3(1)                                                                ----              <---------ATERF1(1)                                                               <----              <---------DEAR3(2)                                                                -----              ------>NtERF2                    --------->ZAT2                        --------->WOX13(1)           <-----------HVH21                  ----------->RAV1(1)                 <---------ARR11(1)          --------->DEAR3(1)<---------HSFB2a(2)--------->At4g35610                <---------ARR14(2)         --------->DEAR3(2) --------->HSFB2a(2)<---------At4g35610               <---------CCA1(2)        ------->TEIL   --------->At4g35610  --------->At4g35610                  --------->GLK1(1) --     --------->ANAC58  <---------ZAT2 <---------MYB46(3)                       --------->ANAC46------     --------->ANAC46  <---------At4g35610  <---------At4g35610                --------->ANAC55(2) --     --------->ANAC58  --------->ZAT2 --------->MYB52(2)              <-------TEIL--------->ARR14(2)  --------->DEAR3(1)--------->LBD16  <---------TOE1(2)              --------->ARR14(2)         ------ ----->GAMYB <---------DEAR3(1)<---------GLK1(2)                    <---------ARR14(2)         ------ ------->ANAC58<---------ABI4(2)--------->GLK1(2) --------->At4g35610--------->CCA1(2)  --------->YAB1 ------->ANAC58--------->ATERF1(1)  <---------MYB52(1)       ---------->DOF2 <---------ANAC46 -------   aacgcctacgcaccgtcggcaccggagctaccagaatcgttcgttcagcagcagcacgatggtgaaagtagatacacttacgcgtatccatcatatcaac  11754000  Previous    Next  AGI:  At2g27470.1    Description:  CCAAT-box binding transcription factor subunit HAP3-related. similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) [Arabidopsis thaliana] (TAIR:AT5G47640.1); similar to unknown [Populus trichocarpa] (GB:ABK94165.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 11752059    to: 11753489    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27480.1    Description:  calcium ion binding. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G04170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48739.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 11753798    to: 11755129    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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