Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->LBD16                         --------->ANAC46                        ------>ZmHOX2a(2)                       --------->CCA1(2)                       <------ZmHOX2a(2)                      <---------ARR14(2)                      --------->ARR14(2)           --------->HSFB2a(2)<---------HSFB2a(1)           <---------HSFB2a(2)--------->HSFB2a(1) ----------DOF2       --------->AGP1              <----------DOF2 ------ALFIN1       --------->MYB59           <---------ALFIN1      --------->MYB46(3) -->MYB46(3)        ----------->ARR10 ---------->DOF2     --------->ZAT6       --------->MYB46(3)   cactttctagtttctagcaaattagatccgaaacattccctaaagacaacacctttactatctctacttaaccaatatcgaaccaatatcgaaacacaca  11710900                                                               --------->LBD16                                                              <---------ANAC46                                                              <---------LBD16                                                             <---------LBD16                                                            xxxxxxxxxxxxxxxx>smallRNA(i)            -                                                <---------ANAC58         --------->DAG2           ---                                              <---------AHL20(2)        ---------->DOF2           ---                             <---------At4g35610<---------ANAC58--------->LBD16                   ---                    ----------->GT1     ------>ZmHOX2a(1)   --------->MYB52(1)             --------->ANAC46          ---------->DOF2    --------->At4g35610<---------ANAC46----------->GT1       <---------WRKY18(1)   tgaaaactgaaacaaagttgcagagtaatttagctcaaattcctctattttcttggaaacgataccgggaaaaaaaaagctataaacttgaccacataac  11711000                                                                               <---------AHL20(2)                                                                              --------->AHL20(2)                                                                              <---------AHL20(2)                                                                           <---------ICU4                                                                           <--------HAHB4           <---------ATHB12                 ---------->DOF2                --------->YAB1 -------->ANAC46                          --------->YAB1------>ZmHOX2a(2) <------ZmHOX2a(2) ------>ANAC58                           <---------ATHB12     --------->AHL20(2) ------>ANAC46                --------->TOE2(3) ---------->DOF2           <---------YAB1 ------>ANAC58    <-----------GT1      --------->WOX13(1)    ----------->GT1--------->TOE2(3)   acacaaaacccaaatcaatttgacatttttagcctaaaaatcaatcaaaagaaagggatcgaaatgaaataaaacgatcattaaatggcgataatcgaaa  11711100                                                                     <-----------HVH21                                                                   <-------TEIL                                             <---------ZAT2        ------>ZmHOX2a(2)                                             --------->At4g35610  <------ZmHOX2a(2)                                             ----------->RAV1(2) --------->AGP1                                          --------->At4g35610    --------->ARR14(2)                                          <---------At4g35610    <---------ARR14(2)                                --------->LBD16                  <---------ARR11(3)                              <---------LBD16<---------At4g35610<---------GLK1(1)          --------->LBD16                      ---------->DOF2--------->GLK1(1)    --------->ARR14(2)              --------->HSFB2a(2)       --------->WRKY12  --------->At4g35610 --------->ZAT2   <---------HSFB2a(2)         <---------HSFB2a(2)       --------->WRKY45--------->DAG2<---------GLK1(1)    <---------ARR14(2)             <---------LBD16       --------->WRKY38(1)   --------->MYB52(1)     <---------ARR14(2)                 <---------ARR14(2)   ccctagaagttgaccacagtatggaaaagctcaccggagatttcagcagctgagaataccgattcgagatccgtcagagatagaacaagtttccggaaga  11711200                                    >>>>>>>>>TBF1                             <---------ANAC46                             <---------ANAC58                                        <---------AHL20(2)                             <---------ANAC58                                        --------->AHL20(2)                            <---------------------WRI1                               --------->AHL20(1)       --------->GLK1(1)--------->ALFIN1                       <---------AHL20(2)   --------->AHL20(2)  --------->At4g35610<---------TOE2(3)                    --------->ICU4    <---------WOX13(1)  <---------At4g35610<---------TOE1(3)   ----------->GT1  <---------YAB1  --------->ATHB12     <-----   atgtagcagaaatcgaaacaattagggtttggcgagaagaagaatgtaaaattgggagcgatgatttttttttgtttgattgaaaaaaaaattgagagga  11711300                                                                 <---------At4g35610          -------                                                               ---------->CDC5                -------                                                          --------->WRKY38(1)                 <------                                                          --------->ZAT18                     <------                                                       <---------ANAC58                       <------                                                       <---------TGA1a                       <-------                                                       --------->TGA1a                       --------                                                       =======================================MYC_MYB                                                       ===================MYC_MYB            <-------                                                       <---------ANAC46                      <-------                                                       <---------ANAC58                 --------->WRKY12                                                       <---------bZIP60(2)              --------->WRKY38(1)                                                     <---------TGA2(2)                  ----------->HVH21                                <------MYB83        ----------->TGA1                  ===============                              ===================================MYC_MYB             <---------ANAC46                              <--------P            ----------->HVH21                <---------ANAC58                             ====================================MYC_MYB             <---------ANAC58                             <-------GAMYB        --------->At4g35610         <-----------HVH21                        <---------MYB52(1)    ----------->ARR10======================================                       <-------GAMYB      <------NtERF2<---------O2           <-----------TGA1-------                       ==========================================MYC_MYB     <---------ANAC58--------                      <---------MYB46(3)<---------DEAR3(1)<---------ZAT18    <---------ANAC58--------         *TSS       <-----------HVH21 --------->CCA1(2)--------->O2          <---------ANAC46<------- -ZmHOX2a(1)    <-----------GT1 <------MYB46(1) --------->ARR11(3)      <---------YAB1<-------GAMYB   aatgttttttttttttttaaaccgtcgttggggttggaagagacggcgaagatgctgacgtggactcagcgactatgtttcgtcagtgcgttgacacgtg  11711400    <---------ICU4    --------->ATHB12   <---------YAB1   --------->ICU4 --------->YAB1 >MYC2 >MYC3 -MYC3 -MYC4 -MYC2                                                                    <----------DOF2 --O2                                                              <-------TEIL ->O2<------------CBF                                           <---------ANAC58 -ABF1   <---------ANAC58                                       <---------ANAC58 --ANAC55(2)--------->ARR11(3)                   <---------YAB1 <------MYB46(1) ==MYC_MYB  --------->ARR14(2)                  <-----------GT1 <------MYB83 ==MYC_MYB--------->LBD16                    <---------GLK1(2) <---------MYB46(3)         --------->YAB1 >MYC4   <---------ANAC58                 <---------TOE2(3)  <---------MYB52(1)          <-------TEIL ->ANAC55(2)<---------ARR14(2)         <---------AHL20(2)  --------->ATHB12   ---------->DOF2 ->TGA1a <---------ANAC46           <---------ARR11(3)<---------AHL20(2)  --------->TOE1(3) --TGA1a<---------LBD16             --------->ARR11(3)--------->AHL20(2)  --------->TOE2(3)  --------   ttctcatcattgcggatattgtttttgtatgtgttttagattttatggattttcattttaatcgttgggttcaaaactttaaaagcccaaattcataaaa  11711500                                                                                              -------                                                                                             <-------                                                                                            <--------                                                                                       --------->ICU4                                                                                       <---------YAB1                                                                                     <---------CCA1(1)                                                                                    --------->AHL20(1)                                                                                    --------->ARR11(3)                                                                      ------>ZmHOX2a(1)<---------AHL20(2)                                                        --------->GLK1(1)           <---------AHL20(1)                                                        --------->bZIP60(1)         <---------ARR11(3)                                                        <---------bZIP60(1)       <---------TOE2(3)                                           <-----------GT1          ------>ZmHOX2a(2)<---------RVE1(1)                       --------->TOE2(3)<---------ICU4  <---------TGA2(1) <---------ALFIN1 --------->YAB1 ->AHL20(2)      <-----------GT1       --------->AHL20(2) <---------YAB1 <---------REM1(2)<---------YAB1   tccatagttatatcattttaaactacataaatacaaaacaaatatttacatcttcgtgatatcattttgatcctctacacatctaagatattattatcat  11711600                                                                                       <----------DOF2                                                                            <---------MYB52(1)     <-                                                                         <-------TEIL ------>ZmHOX2a(2)                                                                       --------->ARR14(2)          <-                            <XXXXXXXXXXXXXXXXXXXXMIR829.2              <---------ARR14(2)         ---                        ------>ZmHOX2a(1)                        <----------ID1     <---------ARR14(2)                     ------>MYB46(1)                             --------->ANAC58   <---------ARR11(3)                     ------>MYB83      --------->ATHB12          --------->ANAC46   <---------AGP1<--  <<<<<<<<<MYB2    <---------MYB59    <---------YAB1          --------->ARR14(2)    --------->ARR14(2) -->YAB1        <-----------GT1     <----------DOF2           <---------ARR14(2)    --------->ARR11(3) --YAB1      <---------ICU4 <----------DOF2   <---------CCA1(2)  --------->ANAC58  <---------CCA1(2) ---GT1<-----------GT1 --------->TOE2(3)>>>>>>>>>ARR2      --------->AHL20(2)<----------DOF2      <--   cttggttttctacaatttttaccttccttactttgagtctttgattgtatatcatcttcaaaaatatacgccaaattcgttttttggatctttttacaaa  11711700                                                                   <---------ARR11(3)             <-- --------CCA1(1)                                                   --------->GLK1(2)              === --------RVE1(1)                                                   --------->ARR11(3)             --- ------>ARR11(3)                                                  --------->RVE1(1)               <-- -------GLK1(2)        <----------DOF2                  <---------GLK1(1)                   <-------- -------ARR11(3)--------->YAB1                          --------->GLK1(1)                 --------->MYB52(1)   gatttttttcgtcgactatcacaaactttgactctatgaaacaaattgaagaaaaatgaattccctaaaaatcttggaagaaacaaggaggctaatggtg  11711800  Previous    Next  AGI:  At2g27350.1    Description:  OTU-like cysteine protease family protein. similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G67170.2); similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G67170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48705.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Ovarian tumour, otubain (InterPro:IPR003323) Range:  from: 11706657    to: 11711309    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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