Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <-------TEIL                                                 --------->YAB1                    ------>MYB46(1)                                         ----------->GT1 <-------TEIL              ------>MYB83                                        --------------->AtSPL8                   <---------MYB59----- >At5g28300              --------->YAB1 --------------->AtSPL3            --------->ZAT6       <----- ->GT1       <-----------RAV1(1)        <---------------AtSPL8--------->ANAC46 <-----------------AGL1   ttcacacataccctattgttgtttctatcaaaataagaagaattggtacaatcacagcatacatacacaatagctatctctaaccaaattggcacagtca  11703400                                                                                      ---------->DOF2                                                                                  <---------ANAC46                                                                                  <---------ANAC58                                                                               <---------GLK1(2)                                                                         --------->MYB111(1)                                                                         --------->MYB111(2)                                                --------->ANAC58         <---------MYB46(3)        <----------DOF2                         --------->ANAC46         --------->MYB46(2)       --------->TOE2(3)              --------->MYB52(1)                 --------->MYB52(2)       --------->TOE1(3)              -------->P--------->ANAC58        <--------P<---------ANAC58 ----->DOF2   <---------ARR11(3)    --------->KAN4(2)           <------ZmHOX2a(1)<-------TEIL<------ZmHOX2a(1) ----WRKY38(1)--------->ARR11(3) <------ZmHOX2a(1)        <---------GLK1(1)  ----------->ARR10    <--   aagtcacaacctttaagacctcaaaaaccaattgaggacatacccgattcaaggaattagaaatcaggaaatgggtagttagattcgtgaaagaaggatt  11703500                                                                                        =============                                                                                        =============                                                                                        ------>ZmHOX2a(2)                                                                                        =============                                                                                       ==============                                                                                       ==============                                                                                       ==============                                                                                       --------->CCA1(2)                                                                                       <------ZmHOX2a(2)                                                                                      <---------AGP1                                                                                      --------->AGP1                                                                                      <---------ARR11(3)                                                                                      --------->ARR11(3)                                                                     --------->DAG2   --------->ARR14(3)                                                                    ---------->DOF2   <---------ARR14(3)                                                                <---------TOE1(3)     --------->ARR14(2)                                                                <---------TOE2(3)     <---------ARR14(2)        --------->DAG2                                       --------->DOF5.7(2)    ----------->ARR10       ---------->DOF2                                      <----------DOF2    <------ZmHOX2a(1)   --------->YAB1            <------ZmHOX2a(1)           <---------ARR11(3)    ================HOX2a_HOX2a --------->GLK1(2)    --------->MYB52(1)                 --------->ARR11(3)    ===============HOX2a_HOX2a -------TOE2(3)    --------->YAB1  <xxxxxxxxxxxxxxxxsmallRNA(i)<---------DOF5.7(2)---------->DOF2  <-   aagaatcagaaaagtcgcagataataacagaggaagagggagagagagagagagagagagacctttaacgaaaagcgtagaggagaaagatctggagaag  11703600                                                                              <------NtERF2                                                                             ------>NtERF2                                                                             --------->LBD16                                                                             <---------ATERF1(1)                                                                            --------->DEAR3(1)                                                                           <---------LBD16                                                                           --------->RAP2.3(1)                                                                           --------->ERF1                                                                           --------->ATERF1(1)                                                                          <---------ATERF1(1)                                                                          ------>NtERF2                                                                         --------->DEAR3(1)                                                                        --------->DEAR3(2)                                                                        --------->MYB46(3)                                                               --------->LBD16--------->RAP2.3(1)            <------ZmHOX2a(1)                                  ------>NtERF2<---------DEAR3(1)       --------->ALFIN1                                       --------------------->WRI1       ----------->HVH21                                     <---------LBD16--------->ATERF1(2)     <---------ANAC46                                    <-------GAMYB <---------At5g28300    <------ZmHOX2a(1)                                    <---------At4g35610--------->RAP2.3(2) =====HOX2a_HOX2a                                        --------->At4g35610<---------ATERF1(2) ==================HOX2a_HOX2a                          <---------MYB46(3)--------->ABI4(1)        <- ==========HOX2a_HOX2a  <---------ARR14(2)          --------->ALFIN1 ----------->HVH21             <- ==================HOX2a_HOX2a                     --------->LBD16  ------>ZmHOX2a(2)    --------->ANAC58 ==========HOX2a_HOX2a  --------->ARR14(2)        <---------ANAC58 <------ZmHOX2a(2)     --------->ANAC58 =====HOX2a_HOX2a   --------->DAG2                <---------ANAC58<---------ARR11(3) <-----------GT1 -----ZmHOX2a(1)   ---------->DOF2       <----------DOF2<-----------RAV1(1)--------->DEAR4(2)    ----   aggagaggagtgaaggagcgataaaggaactgggtgagcatttcttttgaagccgtggctgttgccgcgatctcaccgccggcgaaatcacactctatga  11703700                                                                    <-----------ARR10                                                                ------------>CBF                                                                <---------At4g35610                                                               --------->ANAC58                                                             --------->TGA2(2)                                                            <-----------TGA1                                                            <-----------HVH21                                                           ========================MYC_MYB                                                           <---------O2                                                           --------->O2 <-----------GT1                                               ------>MYB83--------->ANAC58            <----------ID1                                    --------->AHL20(2)     <---------TGA1a   <---------ALFIN1           <-------GAMYB       <---------At5g28300         --------->bZIP60(2)   --------->At5g28300        *TSS           <---------MYB52(1) <-----------GT1  --------->TGA1a--------->MYB46(3) ---------DOF2       <---------ANAC58 --------->YAB1       --------->ANAC58 <---------ZAT14 --------DAG2        <---------ANAC58<---------AHL20(2)    --------->ANAC46------->GAMYB --->TEIL <-----------RAV1(1) <-----------GT1  ------>MYB46(1) --------->ANAC58 ----------->GT1   <--   actttattctcgctgttgttcttccgttccatttaccatataataaaccaaatttaagtccacgtcagcaattctaaccacactgtaaaaaaacaaaaca  11703800                                                             --------->At4g35610                                                             <---------At4g35610                                                          <---------ZAT2                                                          <---------At4g35610                                                          --------->At4g35610                                                   <---------GLK1(2)                                    --------->At4g35610   --------->ZAT2       <---------ZAT6                                    <---------At4g35610 <-----------RAV1(2)  <---------ANAC58                                <---------ARR14(2) --------->ARR14(2)        <---------ANAC58                                --------->GLK1(2)--------->LBD16  <---------GLK1(1)                                --------->ARR14(2) <---------ARR14(2)     <---------MYB52(1)                               <---------GLK1(2)--------->HSFB2a(2)      --------->LBD16                    --------->TOE1(3)           <---------HSFB2a(2)    <---------LBD16 <---------ALFIN1 -------ICU4   *TSS --------->TOE2(3)          <---------LBD16    --------->GLK1(1)  <---------ALFIN1   tcatcgctccctgagagcaaaaccctaatcgtcgattctgctacattcttccggattctcagctgctgaaatctccggtgagtgttcccacactctgtca  11703900                <XXXXXXXXXXXXXXXXXXXXMIR1886.1                                 --------->GLK1(2)         --------->AHL20(2)                                                --------->HSFB2a(2)         <---------AHL20(2)      <---------WOX13(1)                      <---------HSFB2a(2)        --------->YAB1         --------->ATHB12                          --------->HSFB2a(2) <-------       <---------YAB1         <---------YAB1                       <----------DOF2   <---------At4g35610 <---------TOE2(3)         <----------DOF2          ----------->GT1<---------DAG2    --------->At4g35610   attttggttattaaaattttgtttcatttcttttgattgatttttagtttaaaaatgtcaaattgaatgctttttctcgagaatttgagctaaattactg  11704000                                                  <---------ANAC58                                                <---------YAB1                                             =======================HOX2a_HOX2a                                             ------>ZmHOX2a(1)                                            --------->TOE2(3)                                         ===========================HOX2a_HOX2a                                    --------->ANAC55(2)                                    <---------ANAC55(2)                                    --------->ANAC58                     <----------DOF2          ---                                  <---------ALFIN1<---------ANAC58--------->ARR11(3)             <---          <XXXXXXXXXXXXXXXXXXXXMIR841B   ------>ZmHOX2a(1)    ---------->DOF2                  ------    <------------------------ANAC81 --------->ANAC58         <------ZmHOX2a(2)             --------->ETT(2) --At5g28300                    <-----------HVH21<---------ICU4   <---------ARR11(3)       <---------ETT(2)   caattttgtttcagttttcatgggcttctacagccatcacgtccttcctcattcttgccatcgatcaagctcttactttctcagttctcagtgtcgatag  11704100                                                         ----------->GT1                                                ------>ZmHOX2a(2)      <----------DOF2                         <---------ARR11(3) ------>GLK1(2)                           <---------ANAC58                                         <- ------GLK1(2)        <---------ALFIN1    <---------ANAC58                  <---------YAB1  --------- ----->ARR10   <---------At4g35610 <-----------GT1------>ZmHOX2a(1)      <---------MYB52(1) <--------   attctcttctttggtttagctgttccactctctgattttacttagcttgatccttccgaatgtgaaaatgtttctgttatgtttatctgaaatgtggact  11704200  ------->TEIL  --------->GLK1(2)  <---------ARR14(2)                                                        <---------AHL20(2)  --------->ARR14(2)                        <----------DOF2      ------->TEIL --------YAB1                <---------ANAC58      <---------ANAC58    <------------------------ANAC81 >ZAT18                      <---------ANAC58      <---------ANAC58 <----------DOF2                 < -ZAT18        <---------At4g35610        --------->At4g35610   <---------CCA1(2)                   <   catgaatctggaatttgagcaaacaagggtttcttccgaatgtgagcttgaatgcttacaaattttgaatctttttgtttatttgtttgctctcttcatt  11704300  Previous    Next  AGI:  At2g27330.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G06210.1); similar to OJ991214_12.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE01512.2); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 11702110    to: 11703708    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27340.1    Description:  similar to N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related [Arabidopsis thaliana] (TAIR:AT3G58130.1); similar to N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related [Arabidopsis thaliana] (TAIR:AT3G58130.2); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ57647.1); similar to Os04g0678800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054275.1); contains InterPro domain N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737) Range:  from: 11703815    to: 11706302    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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