Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ANAC58                                               --------->ANAC58                                               --------->ANAC46      --------->GLK1(1)                                               <---------ALFIN1      <---------GLK1(1)                                             <---------ALFIN1       <---------ARR14(2)                                            --------->DEAR3(1)    --------->LBD16                                            --------->MYB46(3)   --------->LBD16           ------>MYB83                                       <-----------HVH21        <---------LBD16            ------>MYB46(1)                                   --------->ARR14(2)         ------>NtERF2--------->GLK1(2)            <---------ATHB12       <---------ARR11(3)        <---------ALFIN1<---------LBD16      <-- --->ZmHOX2a(2)                    <---------ARR14(2)       --------->MYB46(3) --------->LBD16    <-- ---ZmHOX2a(2)                     --------->ARR11(3)     --------->PCF2   <---------ARR14(2)     <-- ---->ARR14(2)     <-------TEIL    <---------ARR11(1)     <---------ZAT18  --------->ARR14(2)  <----- -----ARR14(2) <---------TOE2(3)  <---------CCA1(2) <---------ANAC46--------->ARR14(2)  --------->DEAR3(2)   tcgattagtatccaattaagtttcatgctctcttccatatctttcacccacgcttcgtagtccccacccggatatcgaatccgggtttggaccgactctt  11691600                                                <-----------GT1                                                <<<<<<<<<GT-1                                           ------>ZmHOX2a(1)                                           <---------YAB1                                        ------>MYB46(1)                                     --------->HSFB2a(1)                                     --------->MYB46(3)                    --------->MYB52(1)  ------>MYB83        <---------ARR14(2)           <---------HSFB2a(1)     <---------ANAC46                --------->HSFC1(2)                         --------->HSFB2a(2) -------ANAC58   --------->ANAC58--------->ANAC58   <----------DOF2         --------->TOE1(2)       - -------ANAC58   --------->ANAC58--------->ANAC58  <---------DAG2         ------->TEIL              < -------ANAC46   --------->ANAC46<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------CCA1(2)       ---- -----DOF2     <-----------------AGL1<---------HSFC1(2)           <---------CCA1(2)    <---------AHL20(2)   tcgggtcgagtatatcgacccgaaacggtgatgacaagaaccatcctgatttacctttctctgtttccatctcttgtaccttcgagtatataatctctcc  11691700                                                                        --------->ZAT14                                                                       ----------->HVH21                                                                     <---------ANAC46                                                                   <---------ZAT14                                                                   --------->ZAT14                                                             <-------MYC3                                                             ------->MYC4                                                             <-------MYC4                                                             <-------MYC2                                                             ------->PIF5                                                             ------->MYC3                                                             ------->MYC2                                        <------ZmHOX2a(2)    <-------PIF5                                       --------->ARR11(3)   <--------ABF1--------->MYB52(1)                                     <---------MYB46(3)     <---------O2<---------ZAT14                                   ===================================MYC_MYB                                  <---------DEAR3(2)        --------->O2<---------WRKY38(1)                                  <---------MYB46(3)        <---------TGA1a                   -------            --------->MYB52(1)   <---------DREB2C(2)        --------->TGA1a               ---------->DOF2        --------->WOX13(1)       <---------MYB46(3)         <---------ANAC46<---------------AtSPL3    <---------ZAT6               <---------DEAR3(1)         <---------ANAC55(2)         <---------At4g35610  ----------->GT1              <-----------HVH21            =========================================bZIP_DOF -------->ZAT14          --------->KAN4(2)                  =========================================bZIP_DOF ---------ZAT14 --------->At4g35610<-------GAMYB          <------------OsbHLH66         --------->At4g35610 -->ZmHOX2a(1)--------->MYB46(3) <---------At1g77200      <---------ALFIN1  <---------------AtSPL8---   tctgtagtataaatcaacggctgagattaatcccgtcggtggatcatgtttttcagactgccacgtgtgttcagtgaacgggtacgagtcagcaaagaaa  11691800                                                                   --------->ETT(2)                                                                 <-----------HVH21                                                                --------->ALFIN1                                                               ------->MYC4                                                               <-------MYC4                                                  <xxxxxxxxxxxxxxxsmallRNA(le3)                                         --------->ALFIN1      ------->PIF5                                        <-------MYC2           <-------MYC2                                        ------->MYC2           <-------PIF5                                        ------->MYC3           ------->MYC2                                        ------->MYC4           ------->MYC3                                        <-------PIF5          --------->bZIP60(2)                                        <-------MYC4          <---------ANAC55(2)                                        <-------MYC3          <---------TGA1a                                        ------->PIF5          --------->ANAC55(2)                                       <---------O2           --------->O2                                       --------->TGA1a        <<<<<<<<<<ABI5               ==================================bZIP_DOF     <<<<<<<<<<AtMYC2        --------->LBD16                --------->O2      --------->ANAC58      <---------LBD16                  <---------TGA1a   --------->ANAC58    <---------ARR14(2)      <---------ANAC58  --------->ATHB12<<<<<<<<<<HY5                         -    --------->ARR14(2)      <---------ANAC58 <---------YAB1   <--------ABF1                        --  --------->DOF5.7(2)       <---------ANAC46 <------ZmHOX2a(2)--------->TGA1a                     <--  --------->At5g28300===============================HOX2a_HOX2a<-------MYC3    <---------ANAC58   <-- --->DOF2      ---------->DOF2       <---------ALFIN1------>ZmHOX2a(2)         <---------ANAC58   <-- ------>MYB52(1)     <------ZmHOX2a(1) <---------ANAC55(2)    <---------O2   --------->ARR11(3)   <--   gaacggtaaccggaagggaaagaggagatagcttggacaacacgtggatcattgatcgaaggccacgtgtcgatggagagttcttgccagagtttctctt  11691900                                    --------->ALFIN1                                    <---------AtMYB61                                  <---------ANAC46                                 <---------ANAC58                                 <---------DEAR3(1)                                 <---------ANAC46                                 <---------ANAC58                       --------->CCA1(2)                                <---------LBD16                        <---------ARR14(2) <-------TEIL                <-------GAMYB                             --------->ARR11(3) -------->AtLEC2            <---------MYB46(3)<---------ANAC58         <---------ARR11(3) ------->LBD16              --------->MYB111(2)                        --------->ARR14(2) -------ANAC58              --------->MYB55(2)<---------ANAC58         --------->ARR11(1) -------ANAC58              <-----------RAV1(1)<-----------HVH21     ----------->ARR10 -------ANAC55(1)          <--------P<---------MYB46(3)              --------->ICU4 -------ANAC46           ------------>MYB.PH3(2)  <---------SPL7  --------->WRKY18(1)       ---------   ccgtgcatagagtttggaggtaagaagaggttgttgcggtggaggctagcgtcggaccatcgagtcgggtcaagatttgggtttggattatgtcagaatg  11692000                                 <---------MYB46(3)                   <---------MYB52(1)                                    --------->ATHB12                  <-------GAMYB  <---------DEAR3(2)            --------->YAB1                  --------------------->WRI1  <----------DOF2 ----------->TBP <---------TOE2(3)               <---------At5g28300<-------GAMYB    ----------->GT1      --------->ICU4              <     <---------TOE2(3)        ------------>AtMYB77<---------TOE1(3)     <---------YAB1          <---- >ICU4       --------->MYB46(3) <---------DEAR3(1)<---------TOE2(3)   --------->CCA1(2)     ---------   aagagttgagattgaatcaccgttgatgacatcgacggttgccattttctttagggtaaaaactataagaagagatgattaagaaattagagagaagtat  11692100                                                                       --------->MYB46(3)                                                                    <---------WRKY38(1)                                                                    <---------WRKY12                                                                   --------->WRKY18(1)             <---------AHL20(2)                                  --------->WOX13(1)   <---------YAB1         ----------->GT1                 <-------GAMYB<---------ATHB12 ---------AHL20(2)    <---------TOE2(3)   <------ZmHOX2a(1)<--------P--------->WOX13(1) -------TBP --------->AHL20(2)        ---------->DOF2    <---------MYB46(3) -->GT1     <---------AHL20(2)   ---------->DOF2        <---------AtMYB61       <----------DOF2   atataatgaatgaattaaatgactaatgtagaaaataaagaaaaggatgaagaaggcgatggttgatcagtcaaccatggctctttgagactattctact  11692200                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                               <---------ALFIN1             <--------                                                     --------->ANAC58                       ---------                                                     --------->ANAC58                       ---------                                                <-------TEIL --------->ANAC46               =========                                               --------->CCA1(2) --------->ANAC46           =========                 ------>ZmHOX2a(1)            <---------ARR14(2) --------->ANAC58         <----------                <---------MYB59               --------->ARR14(2) --------->ANAC58       <-----------GT1         <---------GLK1(2)        --------------->AGL15   --------->SPL7        =====================      <---------WOX13(1)          <---------------AGL15   <---------REM1(2)     <----------DOF2   <--   tcaagttgaatgattcttcctaattttctaaagtttctatacatagtagatacacacgcgtacacacacgctccattttcttcttttttttatcacgtct  11692300 >ANAC55(2) >ANAC46 >ANAC58 >ANAC58 -TGA1a -O2 -ANAC55(2) >O2 >TGA1a                                                      --------->AHL20(1)          ----------->GT1 ========bZIP_DOF                       <----------DOF2      --------->AHL20(2)       <---------AtLEC2 ========bZIP_DOF            --------->AHL20(2)              <---------AHL20(2)     <---------YAB1 -GT1    <----------DOF2  ----------->GT1               >>>>>>>>>>GT-3b         <---------ANAC58 =bZIP_DOF           --------->YAB1   <-------TEIL   ----------->GT1            <---------ANAC58 ---- --------DOF2       <---------YAB1--------->DAG2   ---------->DOF2        <---------AHL20(2) --------   ctttatgaagtctttcatttttatcataagattaaaaaggttctttttgtcgataaagaaaaataaaatatagtattttttttcttgtgaatggataaaa  11692400                                                                             --------->GLK1(1)               --------->TOE1(2)                                             <---------GLK1(1)               ----------->HVH21                                      <---------ICU4              ------>ZmHOX2a(2)                                      --------->ICU4             --------->ARR14(1)                                     <---------AHL20(1)             --------->CCA1(2)                                      <---------AHL20(2)   ----------->GT1             <------ZmHOX2a(2)                                     --------->YAB1    <---------AHL20(1)            <---------ARR14(2)                                    <---------AHL20(2) --------->AHL20(1)            --------->ARR11(1)                                   --------->AHL20(2)  --------->AHL20(2)            --------->ARR11(3)                                 --------->AHL20(1)    <---------AHL20(2)            <---------ARR11(3)<---------bZIP60(1)         <---------AHL20(2)<---------ARR11(3)          ----------->ARR10   --------->bZIP60(1)         --------->AHL20(2)--------->ARR11(3)        ---------->DOF2  ----------->GT1      ---------->DOF2 --------->AHL20(2)    --------->YAB1 ----->RVE1(1)--------->DEAR3(2)             <---------AHL20(2)<---------AHL20(1)   --------->AHL20(2) ->AHL20(2) --------->ARR14(2)--------->REM1(1)       --------->AHL20(2)   <<<<<<<<<RAP2.2   tatcagagaacaaagatccgacgagaaatgttacatcagtgttttatataaagttttaaaataaatatataatatttagatatccattatattgtatata  11692500  Previous    Next  AGI:  At2g27310.1    Description:  F-box family protein. Identical to F-box protein At2g27310 [Arabidopsis Thaliana] (GB:Q9XIN8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G36090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15864.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 11690940    to: 11692045    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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