Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                  --------->ANAC58                                                 --                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                               ---                          >>>>>>>>>RAP2.2 --------->ANAC55(2)                                  ------             <---------At4g35610  --------->ANAC46                                            <------            <-----------RAV1(1)   --------->ANAC58   --------->At4g35610                      -------     <----------DOF2      --------->TOE2(3)     --------->WOX13(1)                 --------->ARR11(3) <---------TOE2(3)   ------>ZmHOX2a(1)    <---------ANAC55(2)                      <---------ARR11(3) -->ZmHOX2a(1)  <---------At4g35610    <---------ATHB12<------ZmHOX2a(2)  --------->ANAC46<----------   tctaaggctttcttatgctgctcctcaatctaaaacacacaatcacttatcaagcagatcaaattgaaggaaatataagaaacaagaactcgagtcagtg  11684800                                          <---------WRKY18(1)           ------>ZmHOX2a(2)                                         ----------->HVH21            --------->ARR11(3)    ---------->DOF2                    <---------ANAC58        <---------O2 ------ZmHOX2a(1)                      <---------ANAC46        --------->O2 --------->GT1                         <---------ANAC58    <---------HSFB2a(2) -------->GT1                          <---------AtLEC2 =======================HOX2a_HOX2a --->ALFIN1                       <-----------RAV1(1)   ------>ZmHOX2a(1)    <<<<<<<<<TBF1 ---At4g35610              <---------AtMYB61     <---------GLK1(1)    <---------ARR11(3) -->At4g35610            <----------DOF2<---------WOX13(1) --------->HSFB2a(2) -HVH21         <----------DOF2 <----------DOF2  --------->GLK1(1)<---------ANAC46          ---------   gaggaaaaaagcttacttctttatgagctttggtctttgttgcttgacgagaaatctccttctcgacgtcgtgatcttcttcttcatcaaatattgaagc  11684900                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                              -------                                  --------->HSFB2a(2)      <---------ANAC55(2)            <------ZmHOX2a(1)                        <---------WOX13(1) --------->GLK1(1)                            --------->LBD16                     <---------YAB1        <---------GLK1(1)--------->LBD16            --------->HSFB2a(2)                     --------->ICU4        --------->At4g35610--------->SPL7           ==============                  --------->ICU4  <---------HSFB2a(2)      --------->ANAC55(2)         <---------HSFB2a(2)      --------->ALFIN1--------->ATHB12   <------ZmHOX2a(1)--------------->AtSPL3       <---------LBD16 ->DOF2  <---------AtMYB61       <---------LBD16          --------------->AtSPL8       <-----------RAV1(2)   gggtcgaagtggaggtcgagatgatgattgttttttctgggaaggagctctgatttgcaatccgtacttcttcatcttcgatttctattccaggagcaac  11685000                                                            --------->ZAT6                                                     --------->LBD16                                                    <---------HSFB2a(2)    --------->HSFB2a(2)                         <---------GLK1(2)    <---------HSFB2a(2)                         <---------ARR14(2) --->GAMYB                         ------>ZmHOX2a(1)--------->HSFB2a(2)                  <-------TEIL --------MYB.PH3(2)               --------->TOE2(2) <---------HSFC1(1)       --------->YAB1 ---->MYB46(3)                    --------->TOE1(2)<---------LBD16          <---------ATHB12 -----MYB52(2)                 <---------ARR14(2)--------->GLK1(2)         --------->ANAC58 <-------- ---->RAV1(1)              <---------ZAT18    <---------TOE1(2)            --------->ANAC58--------->ARR11(3) =====RAV    --------->ATHB12 --------->GLK1(1) --------->ARR14(2)<---------ATHB12      <--------P   aaacttctgcaaaatcgattgaaaattagcgcaattcctgcgaagtcccagattctggaaaaacactaatcaaacccaagcatgaaataggtagatttcg  11685100                                                            <------ZmHOX2a(1)                                                   <---------TOE1(2)                                                   <---------TOE2(2)                                       <---------ANAC46   <---------TOE1(3)                  <---------YAB1     <------MYB46(1)      <---------TOE2(3)             ----------->GT1         <------MYB83  --------->LBD16                           <------ZmHOX2a(1)             <---------ZAT6---------->DOF2        <---------LBD16                      ---------->DOF2            <---------TOE2(3)      <---------WOX13(1)<------ZmHOX2a(1)           ---------->DOF2*TSS -GLK1(1)   <---------TOE1(3)    --------->ATHB12<---------LBD16           --------->AtLEC2  ========   ctgtagaatcgattagggttacaattcacaaaagttgattggtgtgattttcccaggattaaggaatttagtaatccatggaagaaagtgaaagaggaag  11685200              ------------>CBF             <------ZmHOX2a(2)             --------->CCA1(2)            --------->ARR11(3)            --------->AGP1            <---------ARR11(3)                               >>>>>>>>>>>>>>>>>LFY            <---------ARR14(2)                            <---------RAP2.6(2)            --------->ARR14(2)                     <------------CBF                                 <        ---------->DOF2--------------->AGL15    ------------>CBF                                    -   ----------->GT1     <---------------AGL15<---------RAP2.6(2)   <---------ATHB12          ---------  ----------->GT1   <-----------GT1        --------->RAP2.6(3)------------>CBF             <---------ARR11(3) <------ZmHOX2a(1) --------->AHL20(2)  --------->ATHB12  <---------At5g28300               --------->ARR11(3) ===================HOX2a_HOX2a        <---------ICU4   <-----------GT1        <---------YAB1    <--- ===================HOX2a_HOX2a       <---------YAB1 <---------ICU4     --------->YAB1  <------NtERF2   ggaggagataaaaagatccaattaactatagatggtatagatgattacggcccaattgttacggcccaatgttttcatattttgatgggccgagataatg  11685300                                                                           <---------ATHB12                                                                           --------->MYB46(3)                                                                          ------>MYB83                                                                          -------->P                                                                   --------->KAN4(2)   <---------HSFB2a(2)                                            --------->KAN4(1)   --------->HSFB2a(2)                                           <------ZmHOX2a(2)   >>>>>>>ZML2                                                  <---------ARR11(3) ---------ARR14(2)                                 <---------LBD16<---------KAN4(1) -------->GLK1(2)                        <-----------HVH21     --------->GLK1(1)----------->HVH21 >ICU4      ----------->GT1 --------->AtMYB61<---------At4g35610--------->ARR11(3)                 <- ------TOE2(3)       <-------TEIL   <------ZmHOX2a(2)   <------ZmHOX2a(2) ------>MYB46(1)       <----   aggttctagagtacaagttaaaatgcatcaccaaaacgatcgaggtcatatgctctggatcacagagatcattcccaaccatttgacaactacttctccc  11685400                                                   ----------->RAV1(1)                                                   ------->GAMYB                                                  --------->MYB46(3)                                                 -------->P                                                 ------>MYB83                                               <---------MYB111(1)                                               --------->MYB46(3)                                               --------->AtMYB61                                               ------->GAMYB                                              <---------MYB55(2)                                              --------->DEAR3(2)                                              <---------ATHB12                                              <---------MYB52(2)                                              --------->MYB46(3)                                             ------>MYB46(1)                                             --------->ANAC58           <---------HSFB2a(2)               --------->ANAC58     ------>MYB83  --------->MYB52(2)        ------>MYB83     ------>MYB46(1)                         -------->P    <---------AHL20(2) -------->P--------->HSFB2a(2)               --------->ANAC46                                <------- --------MYB111(1) ----------->GT1      <-----------GT1   --------->AHL20(2)                 <------- -----ALFIN1     <--------P       ----------->GT1------>MYB46(1)                   <-----------GT1  <   acttaccaaatgtctagaggttagtgaatcgtgaagtcgtaatttccaaccaaccacatattaaatagacaagtctaaaactatatcacaacttggattc  11685500                                            <---------GLK1(1)                                            --------->CCA1(2)                ------->TEIL                --------->GLK1(1)       <---------TOE1(2)                   <---------ARR14(2)     <----------DOF2           <---------ICU4   <---------DAG2              --------->YAB1               --------------->AtSPL8              <---- --GLK1(2)      <---------ARR11(1)         --------->ARR14(2)                           <------------ --ARR14(2)    <---------CCA1(2) <---------YAB1             <---------------AtSPL8    <------ZmHOX2a(1) ---------ALFIN1<---------ARR11(3)--------->YAB1        <----------DOF2           --------->ALFIN1   tgccactctttggttctgtatctttctaactcatcatcatattcagatatgcttcaatcttttttgtacatacaaggtagagaagtgaggattgtacagg  11685600                                <---------ARR11(3)                       <---------AHL20(2)                       <---------AHL20(1)                 ----------->GT1--------->ARR11(3)  ---------->DOF2        <---------YAB1 --------->AHL20(1)  --------->YAB1    ------->TEIL --------->ANAC58         <---------YAB1  --------->ANAC58                <----------DOF2 <---------YAB1  --------->ANAC58        --------->AHL20(2)                               <---------DAG2 <---------ANAC55(2)   --------->ARR11(3)--------->AHL20(1)         --------->YAB1    --------->ZAT18 --ZmHOX2a(1)    --------->ANAC55(2)     <---------AHL20(2)<---------At4g35610        <---------ZAT18 ---AtSPL8       <---------ANAC55(2)    --------->YAB1    --------->ANAC58  ------>ZmHOX2a(1)   attatgtatgttgattatcaagtaatatatagaacatctacattataatacctccaaagtaagctacttgtcatcatccttctccttgtccactttcttc  11685700  Previous    Next  AGI:  At2g27285.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27280.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79937.1) Range:  from: 11683038    to: 11685196    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27290.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO48682.1); contains InterPro domain Protein of unknown function DUF1279 (InterPro:IPR009688) Range:  from: 11685478    to: 11686875    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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