Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------DAG2      <---------AHL20(2)                          --------->ANAC55(2)   <---------AHL20(2)            --------->YAB1  <-----------RAV1(1)     <---------ANAC55(2)   --------->AHL20(2)     --------->At4g35610 -AHL20(2)        ----------->GT1         <----------DOF2     --------->AHL20(2) ->DOF2      <---------At4g35610       <-----------GT1       <---------AHL20(2)   <-----------GT1<---   gacactgttgtattcaactgtggaaaatacctattttgaaataactttatttaaaatgcctattttaaatataagctcaatattaaacaccttgaactta  11657000                     <---------HSFB2a(2)                 <---------ZAT14                 <---------SPL7                 --------->ZAT14                  <----------DOF2               <---------------AtSPL3         --------->RVE1(1)              <---------ANAC58               --------->GLK1(2)      --------->TOE2(3)              <---------ANAC58   <---------HSFB2a(2)<---------AHL20(2)        <---------AHL20(2)       <---------------AGL15       <-----------GT1       <---------YAB1--------->HSFB2a(2)     --------->ARR11(3)  --------->ANAC58    ------>ZmHOX2a(1)     <---------AHL20(2)  --------->ANAC58    <---------ARR11(3)  --------->ANAC58--------->ARR14(2)    --------->ICU4 <---------LBD16      ----------->GT1  <---------AHL20(2)      <---------ARR14(2)    --------->AHL20(2)   --------->ANAC58--------->YAB1  --------->ATHB12   ------>ZmHOX2a(1) <------ ------ANAC46 <---------ANAC46   --------------->AGL15  <---------AHL20(2) --------->TOE1(2)  -------   tgtgtatttattatttgtgtgtacgggaagcaataccagaaaatgaaaatctcttttatttattgacaatccataatcctacaaatcctctaacttctag  11657100                                                        <---------YAB1                                                       <---------AHL20(1)                                                       <---------AHL20(2)                                                       --------->AHL20(1)                                                      <---------AHL20(2)                                                      --------->AHL20(2)                                                      --------->YAB1                                                     <---------YAB1                                                   <---------ICU4                                                   --------->YAB1                                                   -------->HAHB4                           --------->AHL20(2)      <--------HAHB4                   <---------AHL20(2)              --------->ATHB51                <---------AHL20(1)                 <--------ATHB1                --------->AHL20(2)                <---------ATHB51            <---------AHL20(2)           <---------AHL20(2)           <---------AHL20(2)<---------AHL20(2)   --------->AHL20(2)           --------->AHL20(2)--------->AHL20(2)   <---------YAB1       --------->ICU4   --------->AHL20(1)        --------->ICU4                               <-----       <---------MYB52(1)  <---------AHL20(2)   --------->YAB1               <---------AHL20(2)<-----      <---------RAP2.6(3)--------->AHL20(2)    <---------AHL20(2)        <---------AHL20(2)<---------ZAT14      <-------GAMYB--------->AHL20(2)   --------->AHL20(1)               --------->AHL20(2)<-------TEIL     ----------->GT1    <---------AHL20(1) <---------AHL20(2)  <------ZmHOX2a(1)           --------->ZAT18 ---HSFB2a(2)   --------->AHL20(1)      <---------AHL20(1)   <---------TOE2(3)             <---------ZAT18 -->HSFB2a(2)  <---------AHL20(2) <-------TEIL--------->AHL20(2)      <----------DOF2--------->LBD16<   acttatgccgttattaaatattttaatatatatatatacatatatatttttaataattatatttaggaacgtcttttaatttatctccgagggtacactt  11657200                                                     --------->ANAC58                                                     --------->ANAC46                                                     --------->ANAC58                                              <-----------GT1        <---------ATHB51                                          --------->ARR11(3)      --------->AHL20(1)   <----------DOF2                        <---------ARR11(3)      <---------AHL20(1)               -- ----DAG2                                <------ZmHOX2a(1)        --------->AHL20(2)          <------ -----DOF2 <----------DOF2             <---------TOE2(3)          <---------AHL20(2)--------->AtMYB61 -----------GT1                    <----------DOF2 --------->MYB52(1)<---------AHL20(2)     ---------   tttttctttatctcttttgtttttatctaaaaacaaacttttaggatattacctcacgaaaaaaacaataaattattcgtctagcaccatcggaaaaaga  11657300                                                                 <---------HSFB2a(2)                   <---------ATHB12                              --------->HSFB2a(2)                <---------ALFIN1                                 --------->HSFC1(1)               <--             --------->ANAC46                                <----------DOF2                      --- -------->DOF2 <---------ZAT18                          <-----------GT1                    --------->YAB1 ----ID1    -------->P            ------>ZmHOX2a(1)   --------->YAB1                      <---------AHL20(2) ->DOF2    --------->AtMYB61      ----------->GT1  <------------CBF               <----------DOF2 <--   caaaagacttcgactaccccactcagtggcacaatcctgtaatttctactaaacattgataccctttctcgaattcatcgtgttctttgtttttaataag  11657400                 <-----------GT1           ------>ZmHOX2a(1)          --------->TOE2(3)        ---------->ID1    <----------DOF2    <---------DAG2------------>CBF                        ---------->DOF2 -------------AtSPL8                           ---------->DOF2                                   <--- ------------>AtSPL8                 ---------->DOF2   --------->TOE2(3)  ---------->DOF2       <---- -------------AtSPL3    <----------DOF2 --------->At4g35610      ----------->GT1                <----   atggtactttttcctcatttttcaatctttttttcaccaagaagcagagaaaagaaacattaaagcagagaaaaaacaaagacaaataatctccatttgc  11657500                                                       <---------GLK1(2)                                              <---------ZAT6                                            <------MYB46(1)                                            <------MYB83                                           <---------MYB46(3)---------->DOF2                                          <---------ANAC46--------->YAB1 -------DOF2                              <---------ANAC58--------->TOE1(3) -----ANAC58                              <---------ANAC58--------->TOE2(3)     --------->GLK1(2)<--- -----ANAC58                       <---------YAB1   --------->HSFB2a(2)         --------->ARR11(3)   tttcttctccatcttcttctaattttcttcaagttttatcaatggctggtgttactggaatcttaaagcttgaagcttggagcatcttgtgaagaagatt  11657600                                                                 --------->MYB52(1)                 -                                                           --------->LBD16                          -                                                          --------->HSFB2a(2)            <---------DAG2                                                          <---------HSFB2a(2)            <----------DOF2                  <----------DOF2                       --------->MYB52(1)        <---------YAB1    <               <-----------GT1                         <-----------GT1       <------NtERF2          -      <---------ANAC58                              <---------ICU4         <---------ANAC46         <      <---------ANAC46  --------->LBD16            ------>ZmHOX2a(1)  <---------ANAC58------>ZmHOX2a(2)      <---------ANAC58<---------LBD16             --------->TOE2(3)   <---------ANAC58=============== --------GT1  <<<<<<<<<<GT-3b             <-----------GT1<---------LBD16   --------->ETT(1)       ---   aactagtttcttgtatttttcttttctggggttttgagtttttttttctcttccttattaccggaagtaatggcatgtcggagtatgatcgcttttagtt  11657700                                                             --------->ALFIN1                                                            --------->LBD16                                                           <---------ANAC58                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                    --------->ARR14(3)      ---------->DOF2                               <-----------ARR10    ------>ZmHOX2a(1)                               <---------ARR14(3)  =============================HOX2a_HOX2a          --------->GLK1(2)  ------>ZmHOX2a(2)                                 --------->ARR11(3)  ====================================HOX2a_HOX2a   <---------ARR14(2) =====================================HOX2a_HOX2a   --------->ARR14(2) ==============================HOX2a_HOX2a          <---------AGP1 <------ZmHOX2a(2)                                  <---------ARR11(3) -------->AGP1                 =============================HOX2a_HOX2a -------->ARR11(3)             ==============================HOX2a_HOX2a ---------ARR14(2)      <------ZmHOX2a(1)<---------ZAT2    <---------ANAC58 -------->ARR14(2)      =====================================HOX2a_HOX2a                         ---- ---------ARR11(3) --------->ALFIN1      --------->ZAT2    <---------ANAC46                  ------>ZmHOX2a(1) ==========HOX2a_HOX2a  ====================================HOX2a_HOX2a                     --------- -------->ARR10---------->DOF2 <------ZmHOX2a(1)   <------ZmHOX2a(1)                        <--------   tagatcctgaaagaaaacaaagtggaggacttaggacaaaacaagctggaagaggatcttgccgtggaagttagtctttgttcaaatccattttcctctt  11657800         <---------ICU4         -------->HAHB4         --------->YAB1        <---------ATHB51     <---------REM1(1)                                                      -        --------->ICU4    <---------MYB46(3)                                                        -   ----------->GT1       <---------WOX13(1)                                                         < ------>DOF2           --------->ATHB12                                             <---------HSFB2a(2) ------>AGL15     <---------AHL20(2) ----------->GT1           ---------->DOF2      --------->HSFB2a(2) -------AGL15     <---------YAB1  <---------ARR14(2)         <---------MYB59      ----------->RAV1(2)   aaagaatgtaataatgggtttttattgattgttgtagatttgttaaaaagttttgtttttagacctaaagtttcgatttttttcttctgggcagtttgaa  11657900  Previous    Next  AGI:  At2g27229.1    Description:  similar to EMB2758 (EMBRYO DEFECTIVE 2758) [Arabidopsis thaliana] (TAIR:AT4G33990.1); contains domain PTHR10483:SF4 (PTHR10483:SF4); contains domain PTHR10483 (PTHR10483) Range:  from: 11656232    to: 11657076    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g27230.1    Description:  LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64625.2); similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G64625.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67460.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) Range:  from: 11657436    to: 11661194    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g27228.1    Description:  CPuORF6 (Conserved peptide upstream open reading frame 6) Range:  from: 11657436    to: 11661221    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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