Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                             --------                                                                                         <------ZmHOX2a(1)                                                            <---------ANAC58           --------->MYB59        --------->ANAC58                                    ----------->GT1     <---------GLK1(2)        --------->ANAC58                                    <---------ANAC58  --------->LBD16<-------      <-----------RAV1(2)                                   <---------ANAC55(2) <---------ARR14(2)     <------NtERF2      ------->PIF5                 <-----------GT1         --------->HSFB2a(2)     --------->ATERF1(1)<-------PIF5              --------->ARR14(2)         <---------HSFB2a(2)  <------ZmHOX2a(1)   <---------LBD16             <---------ARR14(2) <-------TEIL    <<<<<<<<<MYB98 --->ARR11(3)     --------->ANAC58           --------->AtLEC2--------->LBD16 --------------->AGL15 ----ARR11(3)     --------->ANAC58          ------->MYC3    <---------ANAC46----------------->AGL1 ---RAV1(2)---------->DOF2                  <-------MYC3    --------->ANAC55(2) --------->ARR14(2)   cttaggaggcaggcaaagactagccacgggcttcttcaacttctcacatgcagatttacattccgtaaaaatacattttccagatttgttaggaataaca  11607400                                                                                                    -                                                                                                 ----                                                                                              -------                                                                                            <--------                                                                                           --------->ICU4 --->ZAT6                     --------->GLK1(1)                                          --------->ANAC55(2) ->MYB52(1)          <-----------RAV1(1)               --------->ICU4                    <---------ANAC55(2) ----GT1         <-----------GT1            ------>ZmHOX2a(1)                    <-----------GT1 <---   gtatggcattgttctcgtttcacttgttgcacatttcccattactcctgtttgtgtcatatttagaacatgtcttagtaaatgttaccatcacataatta  11607500             <---------ICU4       --------->ANAC58       --------->ANAC58     ---------->DOF2                                                                           <----- ------>TEIL ----------->GT1                                                                  <------ ----->ANAC55(2)             --------->ANAC55(2)                                              <------ -->ICU4    --------->ICU4 <-----------GT1                        <-----------GT1             ------- -ICU4--------->DAG2   --------->ARR11(3)        <---------At4g35610                     <---------KAN4(2) ------ANAC55(2)       <---------ARR11(3)        --------->At4g35610              ----------->HVH21   tgtatcgaaaagcaattgttacatagattttacataacatatatagactatagctgaattgatatttttaacaaaattgtatagttgacagaatgacctt  11607600                                                                              <---------AHL20(2)                                                                              <---------AHL20(1)                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                              --------->AHL20(1)                                                                              --------->AHL20(2)                           --------->AHL20(2)                         <---------AHL20(2)                           <---------AHL20(2)                      <---------AHL20(1)             --------->ZAT14      --------->YAB1      <---------At5g28300--------->AHL20(2)         <-----------GT1 --------->AHL20(2)          <-----------GT1<---------AHL20(2) -----DOF2   <---------ZAT14      <-----------GT1--------->AHL20(2)--------->AHL20(1) ---------AGL15         <---------ARR11(3)      <---------YAB1   --------->AHL20(1)                 - ---DAG2 --------->YAB1 --------->AHL20(1)      --------->ICU4   <---------AHL20(1)               --- -------->AGL15         <---------AHL20(1)   <---------MYB52(1) --------->AHL20(2)  <---------TOE2(3)   ttgaagaagtatcacaatactgtcaatatatatatatcacaatattcgttattatttacagttgaaatatatatttttaatatattaaggcgaatttcaa  11607700                                                  ---------->DOF2                                            <---------YAB1                                          --------->ATHB12             ------>MYB46(1)      --------->TOE1(3)                                <---------YAB1           <---------MYB59        --------->TOE2(3)                     --------->ATHB12 -------->AHL20(2)      <------ZmHOX2a(1) --------->YAB1                --------->YAB1 -------->GT1------>MYB83 ----------->GT1--------->ICU4                <---------YAB1     <----------   atgtaaatacaaacctaactcaagaaggatgaaaaacgttagaatgatgagtgaaagttgaaattggttcttcatcataggtgttatgaatgaattgatg  11607800                                         <-----------TBP                                       ------>ZmHOX2a(1)                                    ------>ZmHOX2a(1)                      ---------->DOF2                             --------->ZAT18                            --------->TOE1(3)           -                             <---------ZAT14    <----------DOF2         --------->TOE2(3)          <-                             <---------ZAT18    <---------DAG2        ------->TEIL              -----     ---------->DOF2         --------->ZAT14 <-----------GT1      --------------->AtSPL8 --------->DAG2 --CBF   ----------->GT1   --------------->AtSPL8             <---------ARR11(3)       ---------->DOF2   gtgttttgaaagtgataaacaacttacatagtgtactcctcctatatatacttttttttaagaagttctatgtaccttaaaccaaaaaaaaaaggttcta  11607900                                         ------>ZmHOX2a(1)                                   <------- --------->ANAC46                       --------->TOE1(3) ------------>CBF                   -------- ------>TEIL                <---------At4g35610          <-----------GT1                  ---------->DOF2 ----------GT1              --------->At4g35610        <-----------GT1                  ----------->HVH21 ---------->AtSPL8 <---------MYB59      --------->TOE2(3)--------->ANAC46         <----------DOF2 ---   tgtacctcacattcaagcttatctaacttgagctatctatctccttaaatttcggttttacacaatttctatatttttctcattctttatgtgaaagctg  11608000        <-------GAMYB       --------->MYB52(2)                  <------------CBF       <---------MYB46(3)   ------>ZmHOX2a(1)     <---------MYB52(1)     --------------->AGL15                   <----------ID1       --------->YAB1 --At4g35610       ------------>CBF --------->AHL20(2)        ----------->GT1           <-------TEIL ->At4g35610      --------->ZAT6--------->AHL20(2)            <----------ID1       <---------ALFIN1 ------>ZAT14<---------REM1(1)  <---------AHL20(2)      ---------->DOF2          ----------->RAV1(1)   tagactcgttcgttgttgtaacacaatttcctatttaaataaaaacattgaaatttcacaaagaaggaaaaaaacaaatatagccacacattcatacaat  11608100                                                                                                -----                              ------->TEIL              <---------YAB1        <---------WRKY38(1)   <                          <---------------AtSPL8      --------->YAB1          <---------WRKY45  -----                      --------->YAB1       <---------MYB52(1)                <<<<<<<<<<WRKY11   -----               <---------YAB1 <-------TEIL--------->LBD16--------->ATHB12    <<<<<<<<<<WRKY6   <-----         <---------TOE2(2)--------------->AtSPL8  --------->ICU4  --------->GLK1(2)            ------ <---------CCA1(2)  --------->AHL20(2)    <-----------HVH21      <---------ARR14(2)           <------   atcaaatctcatatgttatttttaaaataatgtacatgaatagccgtgagtgaaaattatcattgaagaatcggtgttagtcaacttgtagtttatgcac  11608200           <---------ANAC55(2)           --------->ANAC55(2)           <---------TGA1a           =================================================bZIP_DOF        ----------->HVH21    --------->At4g35610    <---------At4g35610  <-----------RAV1(2) ---->ANAC46                                             <---------DOF5.7(2) -----------HVH21                                      --------->DOF5.7(2)             --------->TOE2(3) ---->ANAC58                                     ---------->DOF2            ----------->GT1 ---->ANAC58                                  --------->AHL20(2)            --------->ANAC58     <--- ----LBD16 <---------O2          <---------DOF5.7(2) <---------ZAT6         --------->ANAC58  <------ ->TEIL<-----------HVH21       --------->DOF5.7(2)--------->DAG2        --------->ANAC46<---------MYB52(1) ---AtLEC2 --------->O2      <---------ZAT6 --------->YAB1          <----------DOF2   ----------->GT1   ggagtcagatgtcacatgtccagactctagagtgttaacgagactaaaataaaaagtgttaacgagacgactttacacaagtaaaacaacgttattttga  11608300  Previous    Next  AGI:  At2g27145.1    Description:  LCR9 (Low-molecular-weight cysteine-rich 9). Identical to Putative low-molecular-weight cysteine-rich protein LCR9 precursor (LCR9) [Arabidopsis Thaliana] (GB:P82724); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851) Range:  from: 11607271    to: 11607778    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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