Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->O2                                                                                --------->TGA1a                                                                                <---------bZIP60(1)                                                                                --------->bZIP60(1)                                                                                <---------TGA1a                                                                             --------->TOE2(2)      <                                                                             --------->DEAR3(1)     <                                                                            --------->DEAR3(2)      <                                                                          --------->MYB52(1)    <----          <---------LBD16                                              --------->ANAC58 <---------ANAC58       ----------->HVH21                                           --------->ANAC58  <---------MYB52(1)      <-------TEIL   <---------AHL20(2)                         <-------TEIL--------->MYB46(3)  <----    --------->ARR14(2)                               <------ZmHOX2a(1) --------->ANAC58 <---------ANAC58    <---------GLK1(2)--------->AHL20(2)     <---------SPL7     --------->CCA1(2)<---------O2 <-------    <---------ARR14(2)       ------>ZmHOX2a(1)  --------->HSFB2a(2)--------->ANAC58 <---------DEAR3(2) ----ANAC58     <------ZmHOX2a(1)          <---------MYB46(3)  --------->GLK1(2)===================== ----ANAC58 --------->LBD16----------->RAV1(2)  <---------HSFB2a(2)*TSS--------->ANAC46 <---------ANAC46   ttttcagattcgaccggaggaaattaaactcctgcttcttctcagtcgttcgcgaggaagaagagattcaagcacgaaaccgacgtcgtttcgtgctttt  11587900                                                                                                   --                                                          ---------->DOF2                          --                         <---------ANAC58               ------->GAMYB                            ---- ---------MYB46(3)       <---------ANAC58            ----------->RAV1(1)                        ----- ------MYB83      <---------AHL20(2)                --------->MYB46(3)                          ----- ------MYB46(1)   --------->AHL20(2)              ------>MYB83                    <------NtERF2------ -----MYB46(3)    ----------->TBP                 ----------->RAV1(1)          ------>NtERF2  ------>MYB46(1) -------RAV1(1)  --------->AHL20(2)               ------>MYB46(1)          --------->ALFIN1   ------>MYB83 ---DOF2   <-----------GT1                     --------->ANAC46         --------->DAG2      <-------- ===bZIP_DOF------------>CBF              --------->TOE2(3)            ---------->DOF2     --------->DEAR3(2)   gttggtttttttttttcaatttaaatagcgagacctcgttttaatctaaacccaacaacagaaagccctcataaaaagtgaggcctcatttgaaccgaac  11588000           --------->ANAC58          <---------GLK1(1)   -------->P  ------->GAMYB --------->MYB46(3) <---------MYB111(1) <---------MYB111(2) <---------MYB55(2) ---->MYB46(1)                            --------->ANAC58 ---->MYB83--------->ANAC58               --------->ANAC58 ----->MYB46(3)                       --------->ANAC58 ---->ANAC58                          --------->ANAC58                                           ---- ---->ANAC58                         --------->LBD16              <----------DOF2              <----- ->TEIL  ---------->DOF2--------->ANAC46---------->DOF2     --------->At4g35610             <-------- -MYB59 <------ZmHOX2a(1)        ------->GAMYB              <---------At4g35610       <---------AHL20(2)   ccaacaaccaggaaagcccttgatacaagagacaacgcgcgcgaaagcatttcatcttcttcatctgtcttttttagttgagccctaattcattttcgga  11588100                                     <---------TOE1(2)                       <-----------TGA1    <---------HSFB2a(2)                      --------->ETT(2)     <---------HSFC1(1)                      --------->bZIP60(1)  >>>>>>>ZML2                      <---------bZIP60(1)  --------->HSFB2a(2)            <---------ANAC46    --------->GLK1(2)                                                  --            <---------ANAC58    <-----------ARR10                               <---------CCA1(2) <-- ------->HVH21       ---------->ID1  <---------TOE2(2)                 ------>ZmHOX2a(2)         <--- ----At4g35610   <------------CBF   <-----------RAV1(2)              --------->ARR11(3)   <---------SPL7 -LBD16     <---------ANAC58   <---------GLK1(2) <---------GLK1(2)   <---------AGP1   <-----------GT1   tgacaacttcatttccttgtattgtcgtcataagaatctcaggttctagatgattctctcttctcttatttgatctggttccatctcttcaccgtaccag  11588200                                                         --------->YAB1                                                         <---------ICU4                                                        ------------>CBF                                             ----------->RAV1(1)                                          --------->ANAC55(2)              <----------DOF2             --------->ANAC58         --------->ARR14(2)               --------->ANAC55(1)         ------->TEIL                     --------->ANAC46         <---------ARR14(2)               --------->ANAC58      --------->ANAC58               <---------AHL20(2) <---------ATHB12      --------->ANAC58           --------->AHL20(2)    --------->ANAC58                --------->ALFIN1      --------->ANAC55(2)        <---------AHL20(2)    --------->ANAC58                --------->ATERF1(1)      <---------ANAC55(2)       <---------AHL20(2)  ------------>CBF                 <---------ANAC58    --------->YAB1              --------->AHL20(1) --------->ANAC46                  <---------ANAC46   <---------ATHB12             <---------AHL20(1) --------->ANAC58               <---------DEAR3(1) --------->WOX13(1)       --------->TOE2(3) --------->ANAC46                   --------->ATHB12 ---------->CBF         ------->TEIL--------->AHL20(2)--------->WOX13(1)    --------->YAB1<---------PCF2 ---------HVH21     --------------->AtSPL8<---------ANAC55(2)     <---------GLK1(2)  <---------ANAC58 ------ZAT6   <---------MYB52(1)--------->AHL20(2) --------->ANAC58  <-----------ARR10 <------NtERF2   tgtcaatcacgaatccctttgttttgaaccctaatttatttaatacgcaacacaagcaatcaatacaagagtctcttagcatcatcggcgtgggccaaat  11588300                                                           --------->ANAC46                       <-------GAMYB                    ------->TEIL                      <---------MYB46(3)           <---------At4g35610                     <---------TOE2(2)             --------->At4g35610               ---------->ARF1                  ------>ZmHOX2a(2)              <-----------RAV1(2)              ===================              ----------->HVH21                 <------NtERF2                     <----------DOF2        =================HOX2a_HOX2a         --------->At4g35610                <--------------------        <------ZmHOX2a(1)       --------->ZAT18----------->RAV1(1)        <---------ARR14(2)     <--- --------->At4g35610 <---------TOE1(2)       <---------At4g35610          --------->ARR14(2)     ----   atgagcggaaggagatgtgatcggaggttgaatgtgcagaaagtttcagcggcagatgaactcgaaactaaacttggatttgggcttttctcccaagggg  11588400             <------NtERF2            <---------ATERF1(1)            <---------MYB46(3)           --------->ALFIN1           <---------DEAR3(1)          <---------MYB52(1)     <---------ARR14(2)     --------->ARR14(2)    <---------ZAT2    <------NtERF2    --------->ZAT2  <---------DEAR3(1) --------->O2                                                            -------- <---------LBD16     <---------TGA1a                            --------->MYB52(2)           <------- ==============================bZIP_DOF           <---------ANAC58                           <------- -WRI1 <-----------RAV1(2)                        <---------ANAC58 <---------ZAT14           <-------TEIL ------ARR14(2)      <---------O2       --------->ANAC55(2)   <---------MYB52(1)             -------- ----->ARR14(2)      --------->TGA1a    <---------ANAC55(2) --------->MYB111(1)          ------------   aaacgcggctcgggtggctactcacgtttgcatcagtaagtcacgttttgtgacttccctagtagttagttctctgaatactgaaaacttctaagtacac  11588500      <------MYB83                                                              =====================      ----------->GT1                             <---------ARR14(2)         ------->TEIL          <-      <---------MYB46(3)                          --------->ARR14(2)     --------------->AtSPL8    <-      <------MYB46(1)                          <-----------------AGL2   <---------ANAC46         <---    <---------WOX13(1)                         ----------------->AGL1   <---------ANAC58   --------->WOX13(1)  --------->ATHB12                             <-----------------AGL1   <---------ANAC58<-----------HVH21 ->ZAT14                                   <---------HSFB2a(1)     --------->MYB52(2)<----------DOF2 --ZAT14              <---------MYB46(3)   --------->HSFB2a(1)   <---------MYB52(1)  ================ --ZAT18      <-----------GT1              <---------At4g35610  <----------DOF2<---------DAG2   ===== ->ZAT18    --------->YAB1                 --------->At4g35610  ===================================== --->AtSPL8<---------YAB1                 ---------->TaMYB80   --------->TOE2(3)<----------DOF2 -----   tcactgattggttattatactacgttgttggcagtcatcttgggaagatgccgatactgggaaaacctttagttgtgtggaccttttctttgtcactcag  11588600         --------->ATHB12        <---------YAB1     <---------AtMYB61 <---------At4g35610 <---------ZAT2 ----------->RAV1(2) --------->ZAT2 --------->At4g35610 =====bZIP_DOF --------WRKY12                                                          <---------DEAR3(1) ----------RAV1(2)                                           ---------->ID1 --------HVH21                                         <----------DOF2   <---------RAP2.6(2) =====bZIP_DOF                             --------->At4g35610          --------->RAP2.6(3) ========================================bZIP_DOF      <---------DAG2   --------->SPL7 =====bZIP_DOF                             <---------At4g35610   <----------DOF2  <----------DOF2 ---->TGA1a                   <----------DOF2     <---------ALFIN1     <------ZmHOX2a(1)--------->ZAT6   gtcagctgtggtcattgctactatattagcttctttcttcgtatcagttgctcaaccctttttgtttctttcaggacggctcttcttttaagactaagta  11588700                         ------>NtERF2                        --------->DEAR3(1)                       <------NtERF2                       --------->ATERF1(1)                       --------->ERF1                      ------>NtERF2                      <---------ATERF1(1)                      <---------RAP2.6(3)                     --------->RAP2.3(2)                     --------->bZIP60(1)                     --------->RAP2.3(3)                     --------->RAP2.6(2)            <---------ANAC58            <---------ANAC58                                                                  <------            <---------ANAC46---------->DOF2                                                   <------         <---------MYB52(1)--------->AtMYB61                                         <---------ZAT14     ------>NtERF2   --------->DEAR3(1)                                         <---------ZAT14     --------->LBD16 --------->ANAC46                   >>>>>>>>>TAC1        --------->At4g35610  <-- <---------ARR14(2)  <---------ATERF1(2)        --------->ZAT14          <-----------HVH21<---------ZAT18 --------->ARR14(2)  --------->ATERF1(2)        <---------ZAT14     ------>ZmHOX2a(1)--------->ZAT14   caagttccgcccttacttgtatgccgccaccaaagtatatatgttctctctgtactcgagtgttttcttcctatatgtcaactaaactgcaatgcccttt  11588800  Previous    Next  AGI:  At2g27110.1    Description:  FRS3 (FAR1-RELATED SEQUENCE 3); zinc ion binding. similar to FRS5 (FAR1-RELATED SEQUENCE 5), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G38180.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70262.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46172.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65848.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1 (InterPro:IPR004330) Range:  from: 11583747    to: 11587867    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27120.1    Description:  POL2B/TIL2 (TILTED2); DNA-directed DNA polymerase. similar to EMB2284/EMB529/POL2A/TIL1 (EMBRYO DEFECTIVE 2284) [Arabidopsis thaliana] (TAIR:AT1G08260.2); similar to EMB2284/EMB529/POL2A/TIL1 (EMBRYO DEFECTIVE 2284), DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT1G08260.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64066.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16656.1); similar to putative DNA polymerase epsilon catalytic subunit protein isoform b [Oryza sativa (japonica cultivar-group)] (GB:BAD23092.1); contains InterPro domain DNA-directed DNA polymerase, family B, exonucle Range:  from: 11588301    to: 11601424    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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