Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->YAB1                                                                             --------->TOE2(3)         <-------TEIL                --------->ATHB12                       <-------TEIL --------->YAB1              ------>ZmHOX2a(1)                     ------>MYB46(1) ---------ATHB12             <---------CCA1(2)                     ------>MYB83 ------>WOX13(1)        <---------At4g35610                      --------->AtMYB61 ---->ZAT14           --------->REM1(1)        ----------->HVH21 --------->MYB46(3) -----ZAT14         ------>ZmHOX2a(1)<---------ICU4              <---------MYB55(2)--------->TOE2(3) -->ANAC46    <---------ARR11(3)    <---------YAB1              --------->ANAC46   --------->TOE1(3) ->At4g35610  --------->ARR11(3)    --------->ICU4   <---------GLK1(2)  ------->TEIL   caatcactaggttcaacatctccttcatctcctatctcatgattccccattgacacattctcttccaccaaatgaacatccataaccttcacttagtaga  11587500                                                                    ------>ZmHOX2a(2)                                                                    ================================HOX2a_HOX2a                                                                  --------->ARR11(3)                                                                  --------->AGP1                                                                  --------->ARR14(3)                                                                  <---------ARR14(3)                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)            <----                                                                  <---------ARR11(3)            <----                                                         <---------ZAT6     --------->LBD16  <------ZmHOX2a(1)                                                     <---------YAB1=================================HOX2a_HOX2a                                             --------->DAG2      <---------GLK1(1) --------->AHL20(2)                                             <---------------AtSPL8<------ZmHOX2a(2)  --------->ICU4            --------->ANAC46  <---------YAB1---------->DOF2      --------->GLK1(1) <---------AHL20(2)   gaagttctaatttcacacaaatgtttctcatcttcatagtctacaaaaaagtactattagtgtttggagatcttcttccgaacatataaatatgaggact  11587600                                                                                       --------->WOX13(1)                                                                                    <-----------TGA1                                                                                    <-----------HVH21                                                                                    --------->TOE2(3)                                                                                   <---------ANAC55(2)                                                                                   --------->ANAC46                                                                                   <---------bZIP60(1)                                                                                   --------->ANAC58                                                                                   <---------TGA1a                                                                                   --------->O2                                                                                   --------->TGA2(1)                                                                                   <---------TGA2(1)                                                                                   --------->ANAC55(2)                                                                                   --------->bZIP60(1)                                                                                   --------->TGA1a                                                                                   --------->ANAC58                                                                      ---------->DOF2--------->TGA2(2)                                                              ---------->DOF2     --------->SPL7                                                          --------->ANAC58    --------->At4g35610    <---------CCA1(2)                                   =====================================bZIP_DOF    <---------At4g35610                                 ---------->DOF2       <---------At4g35610   ------->TEIL          <-------GAMYB               <------ZmHOX2a(1)=======================bZIP_DOF  <---------AtLEC2      <---------MYB46(3)     ---------->DOF2===============================bZIP_DOF -----DAG2              --------->MYB52(2)     ==============================================bZIP_DOF ------DOF2       <---------MYB52(1)    --------->GLK1(1) --------->ANAC58  <------ZmHOX2a(1)   ttttgcatctctcactctccgattgtttgttgagagagagagaaacccagaaagaggagaaagcaaaagagagaaagaggagcttacgtcagtcagtgat  11587700                                                             <---------LBD16                   <-----                              ----------->GT1         ----------->RAV1(1)                      <-----                              <---------ANAC46       --------->REM1(1)                  <------NtERF2                --------->At4g35610                  --------->MYB46(3)                 <---------ZAT2   <---------ARR11(3)    ---------->DOF2           ----------->RAV1(1)                  <---------At4g35610   --------->ARR11(3)--------->GLK1(2)          ----------->GT1                         --------->At4g35610   gcgaagaactcagaactcagaagaatcgaaagtcgtgaaattagggagaagggcaacaacaattggggaaaattgagaagaagctatggcagctatttcg  11587800                                                                                <---------O2                                                                                =====================                                                                                <---------TGA1a                                                                                --------->TGA1a                                                                                <---------bZIP60(1)                                                                             --------->TOE2(2)                                                                             --------->DEAR3(1)     <                                                                            --------->DEAR3(2)      <                                                                          --------->MYB52(1)    <----          <---------LBD16                                              --------->ANAC46 <---------ANAC58       ----------->HVH21                                           *TSS--------->ANAC58 <---------ANAC46      <-------TEIL   --------->AHL20(2)                         <-------TEIL--------->MYB46(3)  <----    --------->ARR14(2)                               <------ZmHOX2a(1) --------->ANAC58 <---------ANAC58    <---------ARR14(2)       ------>ZmHOX2a(1)  --------->HSFB2a(2)--------->ANAC58  <---------MYB52(1)    <---------GLK1(2)<---------AHL20(2)     <---------SPL7     --------->CCA1(2)--------->bZIP60(1) < ----ANAC58     <------ZmHOX2a(1)          <---------MYB46(3)  --------->GLK1(2)--------->O2 <------- ----ANAC58 --------->LBD16----------->RAV1(2)  <---------HSFB2a(2)--------->ANAC58 <---------DEAR3(2)   ttttcagattcgaccggaggaaattaaactcctgcttcttctcagtcgttcgcgaggaagaagagattcaagcacgaaaccgacgtcgtttcgtgctttt  11587900                                                                                                   --                                                          ---------->DOF2                          --                         <---------ANAC58               ------->GAMYB                            ---- ===bZIP_DOF             <---------ANAC58            ----------->RAV1(1)                        ----- ------MYB46(1)   ----------->TBP                   --------->MYB46(3)                          ----- ------MYB83------------>CBF                      ------>MYB83                    <------NtERF2------ -----MYB46(3)    --------->AHL20(2)              ------>MYB46(1)              ------>NtERF2  ------>MYB83 -------RAV1(1)  --------->AHL20(2)               ----------->RAV1(1)      --------->ALFIN1   ------>MYB46(1) ---------MYB46(3)<---------AHL20(2)           --------->ANAC46         --------->DAG2      <-------- ---DOF2   <-----------GT1                --------->TOE2(3)            ---------->DOF2     --------->DEAR3(2)   gttggtttttttttttcaatttaaatagcgagacctcgttttaatctaaacccaacaacagaaagccctcataaaaagtgaggcctcatttgaaccgaac  11588000           --------->ANAC58          <---------GLK1(1)   -------->P  ------->GAMYB <---------MYB55(2) --------->MYB46(3) <---------MYB111(1) <---------MYB111(2) ---->MYB46(1)                            --------->ANAC58 ---->MYB83--------->ANAC58               --------->ANAC58 ----->MYB46(3)                       --------->ANAC58 ---->ANAC58                          --------->ANAC58                                           ---- ---->ANAC58                         --------->LBD16              <----------DOF2              <----- ->TEIL  ---------->DOF2--------->ANAC46---------->DOF2     <---------At4g35610             <-------- -MYB59 <------ZmHOX2a(1)        ------->GAMYB              --------->At4g35610       <---------AHL20(2)   ccaacaaccaggaaagcccttgatacaagagacaacgcgcgcgaaagcatttcatcttcttcatctgtcttttttagttgagccctaattcattttcgga  11588100                                     <---------TOE1(2)                       <-----------TGA1    --------->HSFB2a(2)                      --------->ETT(2)     <---------HSFC1(1)                      --------->bZIP60(1)  >>>>>>>ZML2                      <---------bZIP60(1)  <---------HSFB2a(2)            <---------ANAC46    --------->GLK1(2)                                                  --            <---------ANAC58    <-----------ARR10                               <---------CCA1(2) <-- ------->HVH21       ---------->ID1  <---------TOE2(2)                 ------>ZmHOX2a(2)         <--- ----At4g35610   <------------CBF   <-----------RAV1(2)              --------->ARR11(3)   <---------SPL7 -LBD16     <---------ANAC58   <---------GLK1(2) <---------GLK1(2)   <---------AGP1   <-----------GT1   tgacaacttcatttccttgtattgtcgtcataagaatctcaggttctagatgattctctcttctcttatttgatctggttccatctcttcaccgtaccag  11588200                                                         --------->YAB1                                                         <---------ICU4                                                        ------------>CBF                                             ----------->RAV1(1)                                          <---------ANAC55(2)              <----------DOF2             --------->ANAC46         --------->ARR14(2)               --------->ANAC58         <---------ARR14(2)               --------->ANAC58         ------->TEIL                     --------->ANAC55(1)      --------->ANAC58               <---------AHL20(2) <---------ATHB12      --------->ANAC58           <---------AHL20(2)    --------->ANAC58                <------NtERF2      --------->ANAC55(2)        --------->AHL20(2)    --------->ANAC58                --------->ATERF1(1)      <---------ANAC55(2)       <---------AHL20(2)  ------------>CBF                 <---------ANAC46    --------->YAB1              --------->AHL20(2) --------->ANAC58                  <---------ANAC58   <---------ATHB12             --------->AHL20(1) --------->ANAC46               <---------DEAR3(1) --------->WOX13(1)       --------->TOE2(3) --------->ANAC46                   --------->ATHB12 ---------->CBF         ------->TEIL--------->AHL20(2)--------->WOX13(1)    --------->YAB1<---------PCF2 ---------HVH21     --------------->AtSPL8--------->ANAC55(2)     <---------GLK1(2)  <---------ANAC58 ------ZAT6   <---------MYB52(1)<---------AHL20(1) --------->ANAC58  <-----------ARR10 --------->ALFIN1   tgtcaatcacgaatccctttgttttgaaccctaatttatttaatacgcaacacaagcaatcaatacaagagtctcttagcatcatcggcgtgggccaaat  11588300                                                           --------->ANAC46                       <-------GAMYB                    ------->TEIL                      <---------MYB46(3)           --------->At4g35610                     <---------TOE1(2)             <---------At4g35610               ---------->ARF1                  ------>ZmHOX2a(2)              <-----------RAV1(2)              <----------DOF2              ----------->HVH21                 <------NtERF2                     ===================        =================HOX2a_HOX2a         --------->At4g35610                <--------------------        <------ZmHOX2a(1)       --------->ZAT18----------->RAV1(1)        <---------ARR14(2)     <--- --------->At4g35610 <---------TOE2(2)       <---------At4g35610          --------->ARR14(2)     ----   atgagcggaaggagatgtgatcggaggttgaatgtgcagaaagtttcagcggcagatgaactcgaaactaaacttggatttgggcttttctcccaagggg  11588400  Previous    Next  AGI:  At2g27110.1    Description:  FRS3 (FAR1-RELATED SEQUENCE 3); zinc ion binding. similar to FRS5 (FAR1-RELATED SEQUENCE 5), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G38180.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70262.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46172.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65848.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1 (InterPro:IPR004330) Range:  from: 11583747    to: 11587867    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g27120.1    Description:  POL2B/TIL2 (TILTED2); DNA-directed DNA polymerase. similar to EMB2284/EMB529/POL2A/TIL1 (EMBRYO DEFECTIVE 2284) [Arabidopsis thaliana] (TAIR:AT1G08260.2); similar to EMB2284/EMB529/POL2A/TIL1 (EMBRYO DEFECTIVE 2284), DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT1G08260.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64066.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16656.1); similar to putative DNA polymerase epsilon catalytic subunit protein isoform b [Oryza sativa (japonica cultivar-group)] (GB:BAD23092.1); contains InterPro domain DNA-directed DNA polymerase, family B, exonucle Range:  from: 11588301    to: 11601424    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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