Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          ---------->DOF2                       <---------AHL20(2)                 ----------->GT1                 --------->ANAC55(2)                                              <---------YAB1                 <---------ANAC55(2)                                              <---------AHL20(2)        --------->TOE2(2)                           <---------WRKY38(1)           --------->AHL20(2)        --------->TOE1(2)                  <---------ANAC58                      <---------AHL20(2)       --------->HSFB2a(1)                 <---------ANAC58                      --------->AHL20(2)       --------->HSFC1(2)      ---------->DOF2    <-----------HVH21         <---------AHL20(2)       <---------HSFC1(2) ----------->GT1  <---------ANAC46                --------->AHL20(1) --------->TOE1(3)     --------->AHL20(2)  <---------ANAC55(2)             --------->AHL20(2) --------->TOE2(3) <---------AHL20(2)      --------->ANAC55(2)             <---------AHL20(2)     --- -YAB1------->TEIL --------->AHL20(2)      <---------ANAC55(1)             <---------AHL20(1)    <---   gaaccttgaaccttcgaataagtaattaaagtgaaaagctctattacgtatgggtcaattcatgttaacatctcaaataaaattttaattagtgattttt  11280600               <---------WOX13(1)           <---------ANAC58           <---------ANAC46                                      <---------ICU4           <---------ANAC58                                     ------>ZmHOX2a(1)          <---------LBD16                                      <---------MYB59       <---------ANAC58                                   <---------AHL20(2)       <---------ANAC58                               <---------AHL20(2)     --------->ARR11(3)                              <---------AHL20(1)     <---------AHL20(1)                              --------->ARR11(3)     <---------ARR11(3)                              <---------AHL20(2)     --------->AHL20(1)        <----------DOF2       <---------ARR11(3)    <---------CCA1(2)         <---------ANAC58       --------->AHL20(1) ------>ZmHOX2a(1)       <---------ICU4              --------->AHL20(2) ------->ID1  <---------ARR14(2)                    --------->AHL20(2)                   <---------ATHB12 --------GT1--------->LBD16   <---------ANAC58  --------->AHL20(2)         --------->AHL20(2)   ttcctaatatcttgcggattgatgtcaaaatggctttcgagtttattttttaaaatatatttattcctaattccaaatttaagaacatgaaatcaattca  11280700                     ----------->GT1                     --------->ANAC55(2)                     <---------ANAC55(2)           --------->ANAC46        --------->ZAT14                                                               --------->YAB1        --------->ZAT18                                                              <---------YAB1        <---------ZAT18                            --------->YAB1                  >>>>>>>>>NAM        <---------ZAT14                           <---------ZAT6            --------->YAB1--------->DAG2    --------------->AtSPL8                      ----------->GT1            <---------AHL20(2)     ---    <---------------AtSPL8 <-----------GT1  ---------->DOF2               --------->AHL20(2) <------ZmHOX2a(1) <---------TOE2(3)  <-------TEIL       --------->ANAC46              ----------->RAV1(1) ---------->DOF2   aatgaggttgtacacttcaaaattcgtaataacatcactagacggaaaaagagtgataactgataagaaaacaacatataataagggatgataaaggaca  11280800                                              <-------TEIL                                  <--------                                          --------------->AtSPL8                     ------->GAMYB                                          <---------------AtSPL8                   >>>>>>>>>MYB98                                      <---------ICU4                              --------->MYB52(1)                                     <---------ATHB51                             ------>MYB83                                     --------->ICU4                               ------>MYB46(1)                                   --------->YAB1                                --------->MYB55(1)                                  --------->AHL20(2)                             ----------->HVH21                                  <---------AHL20(2)                            <---------MYB52(2)                                 --------->AHL20(2)                             <---------MYB111(1)                         <---------ICU4   --------------->AtSPL3                <---------MYB46(2)                        <---------YAB1-------->HAHB4                            <---------MYB59   <--             --------->YAB1      <---------ATHB12                              --------->ANAC55(2)<-- ------>MYB46(3)        --------->ICU4--------->YAB1     --------->AHL20(2)    --------->ANAC46<-----   acaacacgatgacaaaaataaacttcattattccaattaataatgaagtacatttccaaataaacaattactaaaacttatacctaacggagaattaata  11280900                                                                  ------>ZmHOX2a(1)                                <---------DAG2                <---------ARR11(3)  <---------YAB1                <----------DOF2               --------->ARR14(2) -AHL20(2)                   <-----------GT1                  <---------ARR14(2)                 ---- -------DAG2           --------->AHL20(2)                 --------->YAB1                  <---------ATHB12 --------DOF2          <---------AHL20(2)      ----------->GT1--------->ARR11(3)         *TSS    <--- ------GT1           --------->YAB1   <-----------GT1    --------->AHL20(2)         ----------->RAV1(1)   ctttattcttgaagtttgaacaaaaataaatatactttatttactcaaatagtagataaataaaaatcctctgttccttccttctcccacaaatcaaaca  11281000                                                       <---------At4g35610                                                    ----------->RAV1(2)                                                  <-----------GT1                                               ----------------------->TaNAC69(2)                                             <---------DAG2                                         <-------TEIL ------>ZmHOX2a(1)                                        --------->CCA1(2)                                  --------->ATHB12                                        --------->ARR14(1)                        <-----------RAV1(1)             <-----------GT1           <---------ARR14(2)              --------->YAB1 <---------DEAR3(2)   <---------DAG2           --------->ZAT14  <----------DOF2         <-----------GT1  <---------MYB46(3)   <----------DOF2   --------->AHL20(2)--------->ARR14(2)           <-----------GT1 ---------->ID1 ----->ANAC55(2)     <---------AHL20(2)<---------GLK1(2)        <----------DOF2 <----------DOF2 ------ANAC55(2)--------->TOE2(3)      --------->ARR11(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    -----   agtgactttttatatttatcttattaattctgtagtctcgagattcgctttttctcctgcttacttctttttatcatcttctctttgtcggtttgatttg  11281100                                                            <---------ARR11(3)                                                            --------->GLK1(2)                                                           --------->RVE1(1)           ---------->DOF2                                                   ------>ZmHOX2a(1)                --------->YAB1                                                <------ZmHOX2a(2)                   --------->AHL20(2)                                               <---------ARR11(3)               <---------AHL20(2)                                               --------->ARR14(2)              --------->AHL20(2)                                               <---------GLK1(2)            <---------RVE1(1)                                               --------->ARR11(3)          <---------ARR11(3)                           --------->TOE2(3)   <---------ARR14(3)          <---------GLK1(2)  -------                         --------->GLK1(2)     --------->ARR14(3)          --------->ARR11(3) <------                        <---------GLK1(2)      <---------ARR14(2)        ----------->ARR10    ------- ------>GT1     ---------->DOF2   <----------DOF2------>ZmHOX2a(2)---------->DOF2--------->YAB1   gaaaaactttctgcaaaaaaaagagagattcttaaactttttatctcaagatcctttcaaaaaatctgaaaagagaagatttttaataaaaaagaatggt  11281200                                         --------->ATERF1(1)                                      <-----------RAV1(2)                                     <------NtERF2                                     --------->At4g35610                                     <---------At4g35610                                  ----------->RAV1(2)                                  --------->ZAT2                                  --------->At4g35610                                <-------PIF5                                ------->PIF5                                --------->DEAR3(1)                                --------->MYB46(3)                               --------->DEAR4(2)                               <------NtERF2                               --------->ATERF1(1)      <---------ARR14(2)                               --------->DEAR3(2)       --------->ARR14(2)                               <---------At4g35610    <---------DEAR3(2)          --------->TOE2(2)                              ------>NtERF2           <---------MYB46(3)          --------->TOE1(2)                              <---------ATERF1(1)  --------->LBD16            ----------->HVH21                             <---------ALFIN1      ------>NtERF2            --------->ANAC58                            <---------ABI4(2)     --------->ANAC46          ----------->GT1                           <-----------HVH21      ------->GAMYB             <------NtERF2                          --------->ATERF1(2)    --------->MYB46(3)         <---------ANAC55(2)     -                          --------->DREB2C(2)   --------->At4g35610         --------->ANAC58        -                          <---------ATERF1(2)   <---------At4g35610         --------->ANAC55(2)     <                          --------->DEAR3(1)  <---------WRKY38(1)          ------>NtERF2           <-                          --------->ANAC46   --------->WRKY18(1)          <---------ANAC58        <--                         <---------LBD16------>NtERF2<---------DEAR3(1)   <---------ANAC46  <--------                        --------->MYB52(1)  <-----------HVH21          --------->ALFIN1--------->PCF2 -->ATHB12             <---------ALFIN1 <---------At4g35610            <---------DEAR3(1)   --------- ---MYB46(3)          --------->MYB46(3)<---------ZAT2<---------ATERF1(1) <---------ANAC58<---------ALFIN1 ---->GT1    --------->YAB1<---------ATERF1(1)<---------WRKY12        --------->ATERF1(1)--------->MYB46(3)   tgaaactggtcaccatcatcaacatccaccggcaccggctgcagccggtcatccgccggttccatccatggcgatggcgcgtaacatgggaaccacttgg  11281300      <------NtERF2   <---------LBD16  ------>NtERF2  --------->LBD16 <---------DEAR3(1) -------->SPL7                                                      <----------DOF2 -------->ATERF1(1)                                        XXXXXXXXXXXXXXXXXXXX>MIR413 ---------LBD16                                           --------->MYB52(2) --------ATERF1(1)                                      <---------MYB52(1)              <----------DOF2 -------SPL7                        <---------ALFIN1  <---------ANAC58              <----------DOF2 -O2 --------->LBD16               --------->MYB46(3) <---------ANAC58        --------->ZAT6 >O2<---------DEAR3(1)     <---------ICU4             <---------ANAC46   <---------At4g35610<--------   cctccggcggagcaacttcatcatcttcaatattgcatccactctaacccttcttggcgttagtctctctctttctgcttatactactttctttattttt  11281400                            <----------DOF2                           <---------ICU4                  <---------ICU4                 --------->ICU4               --------->YAB1     ----------->GT1    --------->YAB1                                                <-----------RAV1(1)   <---------At4g35610 <---------YAB1                                             <----------DOF2   --------->At4g35610--------->AHL20(2)                                          <---------DAG2 <-----------RAV1(2) --------->YAB1                 <---------ZAT14          <---------At4g35610 -YAB1        --------->AHL20(2)      ---------->DOF2    --------->ZAT14 <----------DOF2   <---------ANAC46   gtttcagatgtaaaaaataaaaattataatcttttcagtcaaaagttgtattagttcagttctgtctctctctctctttatctgctttatgttgtgtctt  11281500  Previous    Next  AGI:  At2g26510.1    Description:  PDE135 (PIGMENT DEFECTIVE EMBRYO 135); transmembrane transporter. Identical to Nucleobase-ascorbate transporter 3 (NAT3) [Arabidopsis Thaliana] (GB:Q8GZD4;GB:O48718); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G34190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61277.1); similar to hypothetical protein OsI_037641 [Oryza sativa (indica cultivar-group)] (GB:EAY83682.1); similar to hypothetical protein OsJ_035234 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21025.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) Range:  from: 11280989    to: 11284708    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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