Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------->ATHB12                       ----------->GT1                            --------->ICU4               ---------->DOF2               <-----------GT1      <---------YAB1                   <-            <---------AHL20(2)   <---------AHL20(1)             --------->YAB1                    ---         --------->AHL20(1)      --------->AHL20(1)            <---------YAB1                  ------        --------->AHL20(2)      --------->AHL20(2)   --------->ATHB12     <---------ETT(2)     ------   ----------------->AGL3     --------->AHL20(2)     --------->YAB1-------->HAHB4             -------  <------ZmHOX2a(2)  ---------->DOF2  <---------YAB1<---------ATHB12  ------>ZmHOX2a(2)       <------ ----DOF2<---------AHL20(1) --------->AHL20(2)<-----------GT1--------->YAB1                 ---------   atcgatccaaatatataaaaagagaaagaaaaaaatatatatgatttatacccattcattgttttataatgatcggtagacgttgaaaacccaaaaatga  11274600                                                                                           <---------AHL20(2)                                                                                           --------->AHL20(2)                                                                                          <---------YAB1                                                                                        --------->ATHB51                                                                                        <---------AHL20(2)                                                                                        --------->YAB1                                                                                        <---------ICU4                                                                                        <--------HAHB4                                                                                        -------->HAHB4                                                                                        -------->ATHB1 --------AHL20(2)               <---------TOE2(3)                                      <---------ATHB51 ------>AHL20(2)                <---------TOE1(3)                                      <---------YAB1 ----->GT1              >>>>>>>ZML2                                                 --------->ICU4 --->YAB1               --------->HSFB2a(2)                                   --------->ZAT6 ---->GT1               <---------HSFC1(1)                          --------->CCA1(2)  <---------ATHB12 ---YAB1                <---------HSFB2a(2)                        <---------ARR14(2)  --------->ICU4 >YAB1                  --------->HSFC1(1)  --------->TOE2(3)      --------->ARR14(2)<---------ICU4   taaaattagtagtagctaattgagttctagaaataaggtttgtaaacctcattagtttttttgacatgggatacgacttaagactactaattattaattg  11274700                                                              <---------AHL20(2)                                                             --------->AHL20(2)                                                             <---------AHL20(2)                                                        ----------->GT1                                                        --------->ANAC58                                            --------------->AGL15                                           ==========================================================                                           <-----------------AGL3                              <-----                             --------->GLK1(1)          --------->ANAC58                      -------              --------->ANAC55(2)          <-----------------AGL2                             <------       <-------GAMYB<---------AHL20(2)     ----------------->AGL3     ---------->DOF2       ---------       <---------At4g35610 <------ZmHOX2a(1)<---------------AGL15 ----------->GT1 <------ZmHOX2a(1)   ttctatttctgttgacacttattttaagaggaaatcgaccctgtttctatttttagggaagaaataaatagtaaaagattgctaggagttagaatattaa  11274800                                                       ----------->HVH21                                                    --------->MYB52(1)                                                   ----------->HVH21      <---------ATHB12                                   <---------------AGL15        <---------MYB46(3)      --------->ARR11(3)           --------------->AGL15       <---------DEAR3(1) ==================================================MADS_MADS   --------->ALFIN1                    -- ----AHL20(2)                     ----------------->AGL3       <---------AtMYB61              ------- -->AHL20(2)                      ----------------->AGL2 --------->ARR14(2)                <---------ICU4 ---AHL20(2)       ----------->GT1<-----------------AGL2 <---------ARR14(2)  ------->TEIL  --------->YAB1 >YAB1<---------ARR11(3)  ---------->DOF2          --------->WRKY12   --------->MYB46(3)  <---------ATHB12   ttttgtaagatgttagatgtgaagtaacaaaagaatgccaaatatagattaagttgacggacacggtggtgaaccaatgaattttcacatcaataatcaa  11274900              -------->ATHB1              <---------ICU4             <---------ATHB12            ------>MYB83                                                                ------------>CBF            ------>MYB46(1)         ----------->RAV1(1) >>>>>>>>>>>>>>>>>LFY          <----------DOF2           --------->WOX13(1)    --------->ANAC46      --------->ANAC58         ------>MYB46(1)       <-----------GT1           ------>ZmHOX2a(1)     --------->ANAC46         ------>MYB83  ----------->GT1              ----------->RAV1(2)     --------->ANAC58       --------->AtMYB61 <---------TOE2(3)             =================RAV  <---------ALFIN1 --------->At4g35610 -------->DOF2--------->YAB1<---------ANAC58      <---------AtLEC2    <---------At4g35610        <--- -->YAB1 --------->MYB46(3) <---------ANAC58<---------YAB1 <------------CBF   <---------MYB59--------   aaaaaggtttaaccaatcattcatctatttgcttcctgccacaactatatttgcatcaccccattgttcttaagctaaaaccaaacccctttcaatctca  11275000                      <----------DOF2                    *TSS                    <------------------------ANAC81                 <----------DOF2                                      <---------AHL20(2)                <---------DAG2                                        --------->AHL20(2)              -------->P                ------>ZmHOX2a(1)      <---------MYB46(3)                  <-       --------->AHL20(2)         <-----------GT1          <---------YAB1                   <-------- ------CCA1(2)------->TEIL ---------->ID1               <---------AHL20(2)                 --------->ALFIN1 ->TOE2(3)   <-----------GT1    <-----------GT1 <-----------GT1----------->GT1<------ZmHOX2a(1)  <---   aatctaattttaaatctaccttttcttttgtttttttctctcctcacaaattactcaatttatagttgttaattttttgaggagaacaagaaggtggtag  11275100                                                                          --------->HSFB2a(1)                                                                         <---------ARR11(1)      ----                                                                         --------->GLK1(2)      <----                                                                         --------->ARR14(2)     <----                     <---------At4g35610                                 ------->TEIL           <----                     --------->At4g35610                                 <---------ARR14(2)     -----                     <---------ZAT2                                      <-----------ARR10    ------>MYB46(1)                <---------ANAC55(2)                                     <---------GLK1(2)     ------>MYB83                --------->ANAC58                                        <---------CCA1(2)     -------                --------->ANAC55(2)                                     <---------ARR14(1)  ---------                --------->ANAC58                                     ===================HOX2a_HOX2a                --------->HSFB2a(2)                                  ------>ZmHOX2a(2)      <-------- --------YAB1   --------->ANAC46                                   --------->ARR14(2)   --------->WRKY38(1) -MYB46(3)      <---------HSFB2a(2)         --------->ARR14(2)     <---------ARR14(2)   --------->WRKY12 ------ZAT6    <---------LBD16     ------>ZmHOX2a(1)             <---------YAB1  ------>ZmHOX2a(1)---   tattatttcaaaatgtttacggaagctgatagcattcctagggcaaaatatgccaacatgatgcattctgatccgaatctttcctccacgatgacccaac  11275200                                                                                        <---------ICU4                    --------->ANAC55(1)          <-------PIF5                           --------->YAB1            <---------ZAT14                 <------MYB83                               <---------ATHB12        <---------------AtSPL3              <------MYB46(1)                            --------->ICU4     <------ZmHOX2a(1)                    <--------P                         --------->HSFC1(2) --->GAMYB  --------->ZAT18        --------->At4g35610                       <---------HSFC1(2) -----MYB111(2)     --------->ANAC55(2)   <---------MYB55(1)                 --------->HSFB2a(1) -----MYB55(2)      --------->ANAC46     <-------GAMYB                       <---------HSFB2a(1) -----MYB52(2)      --------->ANAC58    <---------MYB46(3)                  ----------->ARR10 ---->MYB46(3)      --------->ANAC58  <---------LBD16                       <---------TOE1(3) ---->RAV1(1)    <---------ARR14(2)----------->RAV1(2)                      <---------TOE1(2) >MYB46(3)  --------->SPL7        ------->TEIL   ------->PIF5            <---------ANAC58 -MYB59 <---------------AtSPL8  <---------ZAT18<---------LBD16           <---------ANAC46 ------>MYB52(1) --------->ARR14(2)<---------At4g35610    <---------YAB1 <---------ANAC58 <---------YAB1   aaacagaggaagagtacggtatacgcaatagcagtgcatctgcggttggcacggggatgtatgatagaatgagttgcgaaggttctccaatgatgatgtc  11275300                                                           ----------------->AGL2                                                           <-----------------AGL1                                                          --------->ANAC46                 --------->REM1(2)                                                         -------->P                      --------->LBD16                                                         ------>MYB83                   <---------ANAC58                                                         ------>MYB46(1)           <----------DOF2         --------->ANAC58                               --------->MYB55(1)        <---------ANAC58         --------->ANAC58                              <---------MYB46(2)         <---------ANAC58         --------->AtLEC2                              --------->AtMYB61      <---------ANAC58         --------->ANAC46                              <---------MYB111(1)    <---------ANAC58    <--         ------>MYB83                                  <---------MYB59  --------->ATHB12<---------ANAC58         ------>MYB46(1)     --------->YAB1          <-----------ARR10<----------DOF2<---------WRKY18(1)   tccttggaaccaagcaactccatttactcaaacacaatggtctactgtagaagaaaacctaccccaaaatggccttattggctcgcttgtccgtgaagaa  11275400                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                            <---------ARR11(3)                            <---------ARR14(2)                            <-----------ARR10                      --------->ALFIN1                            --------->ARR14(3)                 <---------TGA1a                            --------->ARR11(3)                 --------->TGA1a                            <---------ARR14(3)                 <---------ANAC46                            --------->ARR14(2)                 <---------ANAC55(2)                            --------->AGP1                     --------->ANAC55(2)                        =================================================bZIP_DOF            <-------                        ---------->DOF2                        ============================bZIP_DOF                    --------->RAP2.6(2)                        <---------ANAC55(1)           <-------                    ----------->RAV1(1)                        <---------ANAC58           <---------ANAC46                  ------>NtERF2                                <---------ANAC58         <---------ZAT14                 --------->RAP2.6(2)           <---------YAB1 <-------TEIL  --------->GLK1(2)--------                <---------RAP2.6(2)   <-----------GT1       --------->TOE1(2)           --------->ZAT14               <---------At4g35610<----------DOF2           --------->TOE2(2)   ---------->DOF2          --------->ATHB12 --------->RVE1(1)   ----------->HVH21   <---------ANAC46     --------->ZAT18 ---------HVH21--------->At4g35610=======================================bZIP_DOF     <---------GLK1(1)   ggtcacatctattcattagcggccacaaaagatcttctttatactggctctgatagcaaaaacatacgtgtgtggaagaatctaaaggagttcagtgcat  11275500  Previous    Next  AGI:  At2g26490.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G34380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61249.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61238.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 11275020    to: 11276701    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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