Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->At4g35610        <---------At4g35610  --------->ZAT18  <-------TEIL                 <---------ZAT14 ->ARR11(3)                    <-------TEIL --ARR11(3)                --------->DAG2 -CCA1(1)                  <---------------AtSPL8 -RVE1(1)                 ---------->DOF2------->GAMYB -GLK1(1)         ----------->RAV1(1) ----------->RAV1(1)     --------->YAB1 >GLK1(1)        --------->REM1(1)--------->ANAC46      --------->ANAC58    <---------ARR11(3) >CCA1(1)  --------->At4g35610 --------->ZAT14          --------->ANAC58    --------->ARR11(3)------- >RVE1(1) ----------->RAV1(1)  --------->ZAT18        --------->GLK1(1)    --------->YAB1    <------ZmHOX2a(1)   taagtgcatcagcagcactacaacaaaaaaaagtacacagcaacagaaatttagagaaacccaattagaatttagaaagataatgaagtaatcgaggaaa  11265700                             --------->ALFIN1                          --------->LBD16                          <---------HSFB2a(2)                          --------->HSFB2a(2)                         <---------ANAC46                         <---------LBD16                      <---------ARR14(2)                      --------->ARR14(2)                                     --------->ARR11(3)                     <---------At4g35610                                     <---------ARR14(2)                     <---------ZAT2                                          --------->ARR14(2)                     --------->At4g35610                                     <---------ARR11(3)                <---------ETT(2)                                         <---------ICU4                --------->ETT(2)                                         --------->YAB1             <---------GLK1(1)        ------->GAMYB                   <---------ICU4             --------->GLK1(1)       --------->ANAC58                --------->ICU4            <---------ARR14(2)       --------->ANAC58                <---------YAB1            --------->ARR14(2) <------ZmHOX2a(1)                   --------->YAB1        <---------LBD16 <---------LBD16                           <------ZmHOX2a(2)<---------GLK1(2)       --------->MYB52(1)<---------HSFB2a(2)                      =================HOX2a_HOX2a       -------->P    --------->ZAT2--------->MYB52(1)      ----------->HVH21<------ZmHOX2a(1) <------ --->DOF2 --------->LBD16--------->HSFB2a(2) ---------->DOF2  <---------WOX13(1) <---------YAB1   <--   gacaagtgctaccggatatcgacagctccgggaggagcaacggcatggaaagaactaagctctgatggatcataatcaggattttgattctctcttcttt  11265800         ------>ZmHOX2a(2)        <---------GLK1(1)          ------>ZmHOX2a(1)        <------ZmHOX2a(2)      <---------GLK1(1)        ==================================HOX2a_HOX2a       <---------ARR11(3)      --------->GLK1(1)                   <---------ANAC46       --------->ARR11(3)     <---------GLK1(2)------>ZmHOX2a(1)   <---------bZIP60(2)     --------->ANAC58         <---------ARR14(2)                ----------->HVH21     --------->ANAC58         --------->ARR14(2)                ----------->TGA1     ----------->GT1 ----DOF2=================================HOX2a_HOX2a        --------->DAG2        <---------ANAC46 --------DOF2            --------->MYB52(1)<-----------GT1  ---------->DOF2 <---------TOE2(3)       <   ctttagcacgatctctgtattttggattatcggattcctctagtttctcctctctgtgaaggaaaagtgacgagttttgatgtttttgtgtaaaaaccct  11265900                                             ------>NtERF2                                            --------->DEAR3(1)                                 <---------GLK1(1)                      <------ZmHOX2a(1)     ----------->HVH21           --------->DAG2        --------->GLK1(1)          --------->DAG2        --------->ARR11(3)                                             ------         ---------->DOF2        <---------ARR11(3)                             <---------TOE2(3) <--- ----------DOF2     ----------->GT1  ----------->HVH21    <-----------GT1      <---------TOE1(3)-----   agcttttgaagaaaaggggagagaggaaaatgaagatttctgacctccgacgagcggttttctccttgtgatgcgattttgaaggtttcattagatttcg  11266000                                                                 --------->ARR11(3)                                                                 <---------ARR11(3)                <-                                                                --------->GLK1(1)                  --                                                                <---------GLK1(1)                <---                                                   *TSS        <---------ARR11(3)             <------MYB83                        ----------->GT1         --------->ARR14(2)                            -------              <---------ANAC46                  --------->ARR11(3)                            <------         <---------ANAC58                       <---------ARR11(3)                            <------MYB46(1)         <---------ANAC58          <---------ARR14(2)        <---------YAB1                  <------- ----->GT1    <---------ANAC58     --------->ARR11(3)      <---------At4g35610               <------- ------MYB52(1)       ----------->GT1           <---------ARR14(2)                           -------- ---->TOE2(3) <---------ANAC58     <---------GLK1(2)      <---------YAB1              ---------->DOF2   ttaattcgatttcttgtcgtgaaacagagaaaaatcagattttggctgaagttcttcgttctgatgatatctgtgtctgtttcgatttcaaagcgttggt  11266100                                               <---------MYB59                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                             --------->ARR14(2)                                             <---------ARR11(3)        --------->At4g35610                  <---------ARR14(2)      <-----------RAV1(2)                    <-----------ARR10    <-----------HVH21                        <---------ARR11(1) --------ARR14(2)                            <---------AGP1 ------->ARR14(2)                           <---------CCA1(2) ------MYB46(3)                             <---------ARR14(1) -->MYB52(2)                               --------->LBD16 ---MYB46(3)                             <---------LBD16                       --------->LBD16 --DEAR3(1)                             --------->MYB52(1)    --------->AHL20(2)       <---------YAB1 --AtMYB61                    --------->AHL20(2)          ----------->GT1   --------->MYB52(1) ->ALFIN1       --------->YAB1<---------AHL20(2)     <---------AHL20(2)   ----------->HVH21     -----   ggttctggtcaggggaaattagaattcgatgtttaatttagaaaccggatctaatttaaaccgataaaatcgtttagcgaccgggtttgattatcgaaac  11266200                                                                                     <---------ZAT14                                                               --------->TOE2(3)     --------->ZAT14                   --------->MYB46(3)                       <-----------GT1        --------->ANAC46                   <---------MYB55(2)                   --------->AHL20(1)  <------ZmHOX2a(2)                  ------>MYB46(1)                      --------->YAB1      --------->ARR11(3)              <---------At5g28300                      --------->AHL20(2)  <---------ARR11(3)             <-----------GT1    --------->AHL20(2)  --------->YAB1     ---------->DOF2             --          <---------ICU4   <------ZmHOX2a(1)       <---------YAB1    <------ZmHOX2a(2)             -- ------>RAV1(2)   ------>MYB83----------->GT1    --------->YAB1--------->TOE1(3) --------->ZAT6    --   ctggttcacaaatttttaccatccaccaaggacattaaaaacccaattcattcataataatattaccttagatcaaagatcaaacactacacatacaata  11266300    <---------HSFB2a(1)    --------->HSFB2a(1)                  ----------->RAV1(1)  ----------->RAV1(1)                   --------->REM1(1) ------->ANAC58                    <---------ARR11(3)            ------>ZmHOX2a(1) ------->ANAC58                 --------->TOE2(3)      ----------->RAV1(1)   <---------ANAC46 ------->ANAC46                --------->YAB1---------->DOF2     <---------YAB1   caagcaacattcccaaaacgatggtcttatctaacattatctacaacaaaagtaggccaacatggtcctcatagatgttatgtagactcaaaactatttc  11266400                                         <---------ANAC58                                         <---------ANAC58            ------->TEIL                                 ------>ZmHOX2a(1)                --------->AtLEC2   <---------ALFIN1                                --------->TOE2(3)          <---------ALFIN1     ---------->ARF1                          <---------ANAC58           --------->GLK1(1)      <---------ANAC58    <----                 <---------REM1(1)    <---------GLK1(1) <-----------GT1     <---------ANAC58   <-----     ---------->DOF2      <---------ANAC58           <---------GLK1(1)  <----------DOF2    <---------   tcatcgaaaaagaaatgtaatgtagactgcgtctccttagatttcttgatgttagatttccccattccatgcatctttccttgtttcccactgcttttaa  11266500                                      <---------At4g35610                                      --------->At4g35610                                      --------->ZAT2                                              ---                                      <---------ZAT2                                              ---                                 <---------ANAC58                                               -----                             <----------DOF2                              <----------DOF2     ------>NtERF2                            <---------ANAC58                         <---------ALFIN1     --------->ANAC58 -----TOE2(3)          <-----------RAV1(1)                        --------->PCF2          --------->ANAC58 ------GT1       <---------ZAT6  <---------ANAC58             <----------DOF2             --------->ANAC46 -DOF2      --------->YAB1  <---------ANAC58     --------->TOE2(3)---------->ID1     --------->ZAT6   cattttgcaacctctcatagtgtttctgtggcttttcttgagctgagaatacctcatagtctcgctttgtcccactcttttcgctaaacactaagccacc  11266600  Previous    Next  AGI:  At2g26460.1    Description:  RED family protein. similar to Os11g0146700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065737.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65180.1); contains InterPro domain RED-like, N-terminal; (InterPro:IPR012916); contains InterPro domain RED-like, C-terminal (InterPro:IPR012492) Range:  from: 11262010    to: 11266051    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g26470.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN82703.1); contains InterPro domain Protein of unknown function DUF159 (InterPro:IPR003738) Range:  from: 11266231    to: 11269572    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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