Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->ARR14(2)                       <---------ANAC58                                                     <--------                <---------TOE1(2)  <---------ARR14(2)                                      <---------DAG2        <-------TEIL   <---------ANAC58        ---------->DOF2                     <------ZmHOX2a(1)  ---------->DOF2  <<<<<<<<<MYB2   <---------ARR11(3)                             --------->ZAT14 --->ATHB12     <---------TOE2(2)  --------->ARR11(3)                    --------->WRKY18(1)<-------- ---ATHB12   --------->ATHB12     <---------CCA1(2)            <-------GAMYB      <---------ZAT14   ttcgaaaagattcaatccttggttttcgttcaacacatatctcgcagtcgaaagagcgtcttcgtcgttgtattggtcaaacagaggactgtcccttttc  11261600                                                                        ----------->GT1                                                              ------>ZmHOX2a(2)                                                             <------ZmHOX2a(2)                                     --------->At4g35610     --------->CCA1(2)                                     <---------At4g35610    --------->AGP1                      <---------ARR14(2)                    <---------AGP1              <---------AtLEC2                      --------->ARR14(2)                    <-----------ARR10<---------ARR14(2)           ----------->HVH21     <-----------TGA1           <---------ARR11(3)     --------->ARR14(2)         <---------ANAC46     --------------------->WRI1    --------->ARR11(3)     <---------ARR14(2) -DAG2 <------MYB83  <------ZmHOX2a(1)                      <---------ARR14(2)   --------->LBD16 --DOF2<------MYB46(1)<---------GLK1(2)      <-------GAMYB  --------->ARR14(2) <---------LBD16    <--   tatggagattggtgtgaaacagaggattcttacatcgtcatcttcgtcgttgtattggccaagatctatgtagtttgtgaaaccggatttgaatggagtt  11261700                                               <-------GAMYB                                              <---------MYB46(3)                                              <------MYB83                                              <------MYB46(1)                                             <---------AtMYB61                                           <---------MYB52(1)                                    <---------ANAC58                                    <---------bZIP60(1)                                    <---------ANAC58                                    <---------TGA2(1)                        ----------->HVH21<---------ANAC55(2)                     ------>ZmHOX2a(2)   ==============MYC_MYB                    <------ZmHOX2a(2)    <---------TGA1a                   --------->AGP1   --------->TGA2(1)                   <---------GLK1(2)--------->bZIP60(1)                   <---------ARR14(2)    <---------O2                                              --                   <---------ARR11(3)    --------->O2                                              --                   <---------ARR14(3) <------NtERF2                                             -----                   --------->ARR14(2) ----------->HVH21                                     <------NtERF2                   --------->ARR11(3)<-----------HVH21                              --------->MYB52(1)                   --------->ARR14(3)<-----------TGA1    <-------PIF5 --------->ALFIN1    <---------DEAR3(1)       <---------ZAT14 ------>ZmHOX2a(1) --------->TGA1a ------->PIF5 <---------ANAC46    --------->ETT(1) -------HSFB2a(2)----------->ARR10  <---------ANAC46 --------->MYB46(3) --------->ALFIN1<-----------HVH21   tgagaagagtgtattggccaagatcctcgacggagatggcgtcacgtttggttgaaccacgagcggagagaggtgtggagaagatgaaacggtcggagtc  11261800          <------NtERF2       <------NtERF2                                                                    <-------GAMYB       --------->At4g35610                                                            <---------AtMYB61      <---------ATERF1(1)                                                            <--------P      ------>NtERF2                                                                 <-------GAMYB      --------->ABI4(2)                                                            <------MYB46(1)      --------->MYB55(2)                                                           <---------ANAC46      <---------MYB46(3)                                                           <------MYB83     --------->ALFIN1                                                             <---------MYB46(3)     <---------DEAR3(1)                                                     <---------ANAC58      <--  <---------DEAR3(1)                                      <-----------GT1   <---------ANAC58      <--  <---------DREB2C(2)   <-----------RAV1(1) <---------TOE1(3)          <---------ANAC58<---------MYB46(3) ------->WRKY12      --------->GLK1(2)      <---------TOE2(3)          <---------ANAC58<------MYB83 --------->HVH21    <---------GLK1(2) <---------YAB1<---------YAB1     <---------AtLEC2--------->MYB52(2) ---->ATHB12  <-------TEIL           <-----------------AGL2            <---------ANAC46<------MYB46(1)   attgacggtggctgcattcatggaatctgtggccatttttctgattagggttttatgatttttctagttttttgcttgtcttgttgggttggttactgaa  11261900                                                                  <---------AHL20(2) --------->YAB1                                              ------->GAMYB <---------ANAC58    <------ZmHOX2a(1)                              --------->TOE2(2)     --------->ARR14(2) ----------->GT1          ----- -------ANAC58         --------->TOE2(3)    --------->ZAT2  <---------ANAC58  --------->MYB59  <----- -------ANAC58         --------->TOE1(3)   <---------ALFIN1 <---------ANAC46--------->ICU4     <-----   gcgtctcatttttggtgatgctaaacctaaaacctaaggctgtcccaactcccaaaactgcttcgtgtttaatgggtaattaggaaataagaatgctatc  11262000                          <---------------AGL15                          --------------->AGL15                     <----------DOF2                  --------->ARR11(3)                                                       <---------YAB1        *TSS      <---------ARR11(3)                                        --------->ARR14(2) ---->YAB1  --------->ANAC58                                --------->TOE1(3) <-------TEIL <---------ANAC55(2) ----ATHB12 ----------->GT1         --------->GLK1(2)       --------->TOE2(3)--------->CCA1(2) ----YAB1   --------->ANAC58     <---------TOE2(3)          <---------MYB59 <---------ARR14(2)      -   atttcaaaatttggacgtaaaatcttttctaaattaagaatttgaactcaaggtaccaaaaacctaaacagacttgaagatacaaaatagattacgagag  11262100                                                                       --------->ANAC58                                                            <------NtERF2                                                           ------>NtERF2                                    ==============HOX2a_HOX2a     ---------->DOF2                                    ------>ZmHOX2a(2)      <---------ATERF1(1)                                   --------->GLK1(1)       --------->RAP2.6(2)                                   <---------GLK1(1)       <---------RAP2.3(1)                                  --------->ARR11(3)      <---------DEAR3(1)                                  <---------AGP1          <---------ATERF1(2)                                  <---------ARR11(3)      --------->ATERF1(2)       <---------ALFIN1                                 <---------CCA1(2)       <------NtERF2 --------->ANAC58                             <---------ANAC58            --------->At4g35610       ------>NtERF2                             <---------ANAC58           <---------ATERF1(1) <---------ALFIN1      <---------ANAC46       <---------ANAC46          <---------DEAR3(1) ----------->RAV1(1)    <---------ZAT14         --------->ATHB12           ---------->CDC5 --------->ANAC46   ------>ZmHOX2a(1) -------->ATHB12       <---------ATHB12    <------ZmHOX2a(1)--------->ATERF1(1)   <---------ALFIN1   aatgactggagtagacaagagacaaatcaatgcttggatctcttaggagtttgtgcctcggcggcatccaaagaagcaacatccccaccctccttctcca  11262200                                       <---------ICU4                     <---------ANAC58                         ------>ZmHOX2a(2)                                <---------ANAC58                       <---------AGP1  --------->ATHB12              --------->At4g35610              --------->ARR11(3)       --------->ATHB51    --------->WRKY18(1)              <-----------ARR10       <---------YAB1      <-----------HVH21                       <--              <---------ARR11(3)      --------->ICU4<-----------HVH21<---------At4g35610         <---          <---------TOE1(2)        <-------TEIL--------->GLK1(2) --------->ARR14(2)            ------  <----------DOF2      --------->ARR11(3)    <---------At4g35610 <---------ARR14(2)<---------ETT(2)   tcttctttctcgtaagtatcttattgatctggtgaagttcattattgagcttctggtcacggtcacggttctgcttccttgtctttcgaccatcttgcat  11262300                   ------>NtERF2                 <-----------------AGL1     --------->LBD16 <----------DOF2                   <-----------GT1    --------->ANAC46 <---------DAG2                    ---------->ID1   <-----------------AGL1                             <-----------GT1   <---------LBD16--------->DEAR3(1)            --------->AHL20(1)                                  <   <-----------------AG                         --------->AHL20(2)                                <--   ----------------->AGL1                       <---------AHL20(2)                               ----   ----------------->AGL2                       <---------AHL20(1)                               ---- --------DOF2  --------->ANAC58          --------->At4g35610                                   ------ ------ICU4    --------->ANAC58          <---------At4g35610    ------>ZmHOX2a(1)              <----- ->TEIL       --------->SPL7 <------NtERF2     --------->AHL20(2)          ---------->DOF2    -------   ctttaccccgaattggaacgccgcttttggcatcgcttccttctgctcattatatttttcccattcctcttctgtctcaaagtcccatcgatgtaaacca  11262400    <---------ANAC58      -------->P    <---------ANAC46     ------->GAMYB    <---------ANAC58    <---------MYB111(2)                             --------->ANAC55(2) ----------DOF2         --------->MYB46(3)                              <---------ANAC55(2) -------DAG2            <---------MYB55(2) <-----------GT1              ----------->GT1 -->MYB46(1)    <-------TEIL        --------->At5g28300          --------->ANAC58 -->MYB83       ------->TEIL   <---------ARR14(2)                --------->ANAC58 --->AtMYB61 --------->AtLEC2  <---------GLK1(2)                 --------->ANAC46 ----ALFIN1<---------ANAC46    --------->ARR14(2)        --------->AHL20(2)      <-----------HVH21 -->MYB46(3)--------------->AtSPL8 ----------->GT1      --------->AHL20(2)--------->AHL20(2) <-------   ccctttgcctgttccatgtacattcaacaaccagatactgtaattttgctcttccacaataaataacaaggaacatgtaattaagtcagggcataccttt  11262500  Previous    Next  AGI:  At2g26455.1    Description:  pseudogene, similar to Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518: Zinc finger, C3HC4 type (RING finger), signature and Pfam:PF01485 IBR domain; blastp match of 25% identity and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse) {Mus musculus} Range:  from: 11260778    to: 11262008    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g26460.1    Description:  RED family protein. similar to Os11g0146700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065737.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65180.1); contains InterPro domain RED-like, N-terminal; (InterPro:IPR012916); contains InterPro domain RED-like, C-terminal (InterPro:IPR012492) Range:  from: 11262010    to: 11266051    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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