Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                -----                                                                                                <----                       --------->SPL7    <-------TEIL                                           -----                    <---------ANAC46  --------->HSFC1(2)                                <---------ICU4                    --------->ETT(1)  <---------HSFB2a(1)                       --------->ZAT2 ------                   <------NtERF2      --------->ZAT2                            --------->At4g35610                  <-----------HVH21   <---------ZAT2                            <---------At4g35610                 --------->ALFIN1     <---------HSFC1(2)                     --------->At4g35610-----   <---------------AtSPL8            --------->ANAC58                        <---------At4g35610<----   <---------------AtSPL3            --------->ANAC58    <---------ANAC58    --------->ZAT2    ------ ----ANAC46   --------->DAG2      <------NtERF2          <---------ANAC58    <---------ZAT2  <------- --->ETT(1)  --------->DAG2    <---------LBD16    ---------->DOF2     <----------DOF2   <---------GLK1(2) ----->GT1  ---------->DOF2  <------NtERF2<---------ANAC46        ------>ZmHOX2a(2)  --------->YAB1   gaaaaattgtaccgaaaaggtgtcggaaggcatcgcggcaagcttcgtggatgaaagaagcgtattgatcgtctttctcagcagctctcataatctccgg  11227400       --------->MYB52(1)    <---------At4g35610    --------->At4g35610 <---------ZAT2 <---------At4g35610 --------->At4g35610 --------->ZAT2                                                         <---------ARR14(2) -------CDC5                                                            --------->ARR14(2) ---->At4g35610               --------->LBD16                     <---------ARR14(2) -----At4g35610               --------->At5g28300             <---------LBD16 ---->ZAT2                   <---------ANAC46             ------>ZmHOX2a(1) --->LBD16                 ------>NtERF2                  ----------->HVH21 ------>RAV1(2)            --------->LBD16              ----------->RAV1(2) -----ZAT2             --------->ARR14(2)               <---------ICU4 <---------GLK1(2) >NtERF2      --------->ARR14(2)                    <-------TEIL  --------->ARR14(2) --LBD16      <---------ARR14(2)                --------->LBD16 --------->LBD16                 <----   ctgagctgctaacgggaatcgtctgattccgccgtgaaacccgctcgaaccgggttcatcctgacccggacccgaatccccattaagcctcatcgtttct  11227500                 ------->TEIL         <---------ARR14(2)     <---------LBD16                                                         <---------AHL20(2)    <---------ANAC58                             --------->YAB1       ----------->GT1    <---------ANAC58                          <----------DOF2      ---------->DOF2   *TSS     -------    <---------ANAC46                <---------AHL20(2) <---------AHL20(2)    --------->AHL20(2) ------DOF2------>ZmHOX2a(2)--------->YAB1 ------>NtERF2     <---------AHL20(2)  <---------AHL20(2) -   tttttttcgtggatcgatgaacttgccgaatgatgttttttattcggcctttgatatttttttttaattcaaaggaaaaataaatatttgcaaatgtatc  11227600                                       --------->YAB1                                      <---------YAB1                                 --------->YAB1                                --------->AHL20(2)                                <---------AHL20(2)                            <---------AHL20(1)                            --------->AHL20(1)                            <---------AHL20(2)                            --------->AHL20(2)              --------->YAB1                         <---------AHL20(2)                <---------YAB1                         --------->AHL20(1)          <---------YAB1                      --------->AHL20(2)           --------->AHL20(2)                 <------ZmHOX2a(2)  <---------ICU4 <---------AHL20(2)                 ------------>CBF<---------ICU4    --------->ATHB51      <---------AHL20(2) <---------AHL20(1)    --------->AHL20(2)      <-----------TBP --------->YAB1--------->YAB1 <---------ICU4    <-----------TBP  <---------ATHB12--------->AHL20(2)<---------AHL20(2)     --------->YAB1 >TEIL--------->AHL20(2) --------->AHL20(2)    <---------AHL20(2)          --------------->AGL15 ----->NtERF2   --------->ARR11(3) <---------YAB1 --------->ICU4           <---------------AGL15    -   gatgccatttatatatgagatcaataatattttattaattataatctttttaattatttttatgatcaaatatttgtctatattaagcagtattttgtaa  11227700                                                                                                    <                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                              -------                                                                                              -------                 <---------At4g35610                              --------->AHL20(2)          <------                 --------->At4g35610              --------->AHL20(2)                         <-------               --------->ZAT18                  <---------ANAC55(2)                       --------->ATHB51             <-----------HVH21                  --------->ANAC55(2)                       <---------ICU4          <---------ANAC46                      ----------->GT1 --------->YAB1         --------->TOE2(3)    <---------ATHB12                       <---------YAB1  <<<<<<<<<MYB98             *TSS<--------HAHB4  --------->WOX13(1)                  <---------ANAC55(2)<---------YAB1      ---------->DOF2 -------- ----------->CBF <---------ZAT2       --------->ANAC55(2)----------->GT1 --------->LBD16 --------->ICU4   tagtcaatcgattcgggtgagctgattagttttttagaatacatgatgttaagtaaattatgttaaaaataaatccgagcaaagtgtttccataattaaa  11227800          <---------RVE1(1)         --------->ARR11(3)         <---------ARR11(3)  ---------->DOF2 ---------YAB1 ----->ATHB1 -------ICU4 ----->AHL20(2)                                                                            --------->YAB1 ------ATHB51                                                                              ------>ZmHOX2a(2) ------AHL20(2)                                                                            ========== ----->ICU4                                                                               <------ZmHOX2a(2) -->AHL20(1)                                                                      --------->DAG2 -->AHL20(2)                                                                     ---------->DOF2 ---- ---AHL20(2)     --------->TOE1(3)                                     <---------------AGL15     ==== --AHL20(2)      --------->TOE2(3)                                     ---------->ID1     =========== ->AHL20(2)   <-----------GT1<----------DOF2        <----------DOF2    --------------->AGL15   <-----   ttattaaaggagatattaaccttgacgaaaactttctctcttctctctcaaaaacttttgagagagagagtttgtttttttggtaaagtccgatcgtgat  11227900                                 <---------LBD16                               <-----------GT1                          ----------->GT1                        --------->SPL7                       <---------MYB52(1)                      <-----------HVH21                      <---------SPL7                                            <---------ANAC58                      ------>NtERF2   ------>NtERF2                             <---------ANAC46      ------->TEIL    <---------RAP2.6(3)------>ZmHOX2a(1)                  <---------ANAC58        <     <---------AtLEC2--------->DEAR3(1)----------->RAV1(2)                  <---------ANAC58        - =======================HOX2a_HOX2a  <---------ARR14(2)                   --------->MYB55(2)      --- -->ZmHOX2a(2)    --------->ANAC46   --------->ARR14(2)                   <---------MYB46(3)     <--- =======================HOX2a_HOX2a--------->LBD16                    <-----------RAV1(1)    -------- =======================HOX2a_HOX2a<---------ATERF1(1)                <---------ZAT6         <------- ----ARR11(3)    ------>ZmHOX2a(1)--------->ANAC46             ---------->DOF2  <---------ANAC58<----   ctcatatgcatgttctatcctcgccgtccggtttatccggctcctgtccagcatcgactagcttctaaagtagtgttggctggcttatgtctggcgattt  11228000                                                                      ------>ZmHOX2a(2)                                                                     <------ZmHOX2a(2)                                                                     --------->CCA1(2)                                                                    <---------ARR11(3)                                                                    --------->ARR11(3)         <---------At5g28300                                        <---------ARR14(2) ---------RAP2.6(3)                                                 --------->ARR14(2) ----->NtERF2                                                       <---------AGP1 ------->ID1                                                        --------->AGP1--------->ICU4 ------At5g28300                                                  ----------->ARR10 ->ARR14(2)                             <---------TOE2(3)<---------ICU4      <------MYB46(1)        < --ARR14(2)                        <---------MYB46(3)    --------->YAB1      <------MYB83        <--- -------GT1          ------>NtERF2 --------->MYB52(2)   <---------ATHB12    <---------MYB46(3)-------   gccgtcttgtttacggtgtcttcggccagttttgggtttgttaagtttttttgtttcaataatctcattagatctgagttggtgatgatgttttaggtgt  11228100                                                                 --------->LBD16                                                                --------->HSFB2a(2)  --------->ARR11(3)       ---------->DOF2                                          <---------HSFB2a(2)  <---------ARR11(3)    <---------ANAC55(2) ------>NtERF2                    <---------ARR11(3)          --------->GLK1(2) -----------HVH21    xxxxxxxxxxxxxxxx>smallRNA(i)       <---------GLK1(1)           <---------GLK1(2) ------ANAC46    <---------GLK1(1)        <----------DOF2--------->ARR11(3)  ---------->DOF2 -->ALFIN1       --------->GLK1(1)<----------DOF2       --------->GLK1(1)   <------ZmHOX2a(1)   -----   tgtgtcacttaaagaatggatttctccgacttgtttcttttgagcttttggtttgcagaaatctttccagagacataaggaaagaagaatctttcgaagc  11228200                                                                                      <---------AHL20(2)             ---------->DOF2                                                          --------->AHL20(1)          --------->TOE2(3)                                                           <---------AHL20(1)      <---------WOX13(1)                                            <---------TOE2(3)--------->YAB1    --------->ATHB12                                      ----------->HVH21   ------->GAMYB    <---------ICU4          <----------DOF2              --------->At5g28300 --------->MYB46(3)   --------->ICU4           --------------->AGL15       ------->GAMYB <------ZmHOX2a(1)<---------YAB1   <---------YAB1     --------->MYB52(2)                ----------->GT1      <---------MYB52(2)     - --------->YAB1     <---------MYB52(1)        --------->At4g35610 ---------->DOF2    --------->AHL20(2) ---->YAB1--------->TOE1(3) <---------------AGL15    --------->MYB52(1)      <---------MYB55(2)     <   atattatgattgccttaaagctgttagtttctttttggagtttcgattagcttagcaacggtgacaaacaaaggattcaacgaccgattatatttcggcg  11228300  Previous    Next  AGI:  At2g26350.1    Description:  PEX10 (PEROXIN 10); protein binding / zinc ion binding. Identical to Peroxisome assembly protein 10 (PEX10) [Arabidopsis Thaliana] (GB:Q9SYU4;GB:O65895;GB:Q8LBN2;GB:Q8S8Q5;GB:Q9M400); similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.2); similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43873.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterP Range:  from: 11224517    to: 11227585    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g26355.1    Description:  other RNA Range:  from: 11227786    to: 11228613    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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