Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                               ------                                                                                               <-----                     --------->ARR11(3)                                                       -------                     <---------ARR11(3)                                                    <---------          <------MYB46(1)                                                            <---------AHL20(1)          ----------->GT1           <---------TOE1(3)                                --------->AHL20(1)          <------MYB83              <---------TOE2(3)          <---------AHL20(2)    <---------AHL20(2)     --------->AHL20(2)       <---------YAB1             ----------->GT1        <---------YAB1-------     <---------AHL20(2)    <---------YAB1          <------ZmHOX2a(1) <---------YAB1 --------->AHL20(2)    --------->AHL20(2)  --------------->AGL15    <---------TOE2(3)   ------->TEIL  <---------YAB1   gtgctatttatttggttacaaattatcttgttatagttaatgtttgtaatttaggaagtttgtaatttatgaacattgttttgtgattatatttttccgt  11088000                  <---------AHL20(1)                  --------->AHL20(1)                 <---------AHL20(2)               <---------AHL20(2)         <---------AHL20(2)         --------->AHL20(2)       <---------AHL20(2)     --------->AHL20(2)     <---------AHL20(2)   --------->AHL20(2)   <---------AHL20(2)  <---------AHL20(2) --------->AHL20(2)  <---------AHL20(2)         <-----------GT1 -----MYB52(1) --------->AHL20(2)          --------->AHL20(1) --->LBD16 --------->AHL20(2)              --------->AHL20(2) ------HVH21 --------->AHL20(2)            <---------AHL20(2)         ----------->GT1 -->ANAC55(2)<---------AHL20(2)           <---------AHL20(2)      --------->AHL20(1) --GT1 --------->AHL20(2) <---------AHL20(2)    --------->MYB52(1)--------->ARR11(3) -->ANAC46 <---------AHL20(2)             --------->AHL20(2)    ------->TEIL          ------->TEIL  <   catatatatatatatatatatatattattttatataagttttaaaaaaattaacagagtttagatgaatatatagaaaattttagatgaacatgtatgaa  11088100                                                                  --------->ANAC58                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                         <---------MYB52(1)                                                        --------->LBD16                                                      <---------LBD16                                                    <---------ARR14(2)    <---------ARR11(3)         <---------AHL20(2)                         --------->ARR14(2)    --------->GLK1(2)     -----         --------->AHL20(2)                     ---------->DOF2   --------->ANAC58         <--------- ---------ICU4           <----------ID1     --------->YAB1--------->GLK1(1)       <---------MYB52(1)   aatcaatacatataaataccccaaaaaaaaacaaaaaaaaactcaagtataaaagttccggtatccacaggcccagtatctatcgtttttttttttcagg  11088200                                                                       --------->ARR11(1)                                                           <---------ATERF1(1)                                                           ------>NtERF2          <---------ZAT2                                                           <------NtERF2          --------->ZAT2                                                         <---------ANAC58    --------->ZAT2                                                      <---------MYB46(3)--------->GLK1(2)    ------>MYB46(1)                                   <---------DEAR3(1)--------->CCA1(2)    ------>MYB83 --------->ARR14(2)                   --------->MYB55(2)--------->ARR14(1)  <---------MYB59<---------ARR14(2)                  --------->ALFIN1  <---------GLK1(2)  <---------MYB111(1)                             <-----------RAV1(1)  --------->ARR14(2)  <---------MYB46(2)  --------->ANAC46         <----------DOF2         <---------ARR14(2)          -- ---->AGP1<---------AHL20(2)         <---------AHL20(2)  <---------ANAC58<-------TEIL              -- --GT1   --------->AHL20(2)          --------->AHL20(2) --------->ATERF1(1)  <---------ZAT2   <------   tctacctactattaaatccgatacacatcagttttttttttaatttgggcttctggtgggcgggctcaattcagattcgggctgggctgggtttttttac  11088300                                                                                     --------->ARR11(3)                                                                                   ------->TEIL                                                                                *TSS <---------ARR11(3)                                                       <---------O2            <------NtERF2                                                       --------->O2           ------>NtERF2      --------->ARR11(3)                               --------->ANAC46      <---------DEAR3(1)     -      <---------ARR11(3)                               <---------TGA1a       ----------->HVH21      - ---->MYB46(1)                                         --------->TGA1a       --------->DEAR3(1)     < ---->MYB83                --------->ANAC46          <---------ALFIN1       <------NtERF2          <- -----GT1         ------------>CBF                ----------->HVH21       <---------DEAR3(1)       <-   caactcaacatcttcaactaaacaattacacatcggttttcttctcttctctctcacacgtcgattttgttctctctcggcgacgaagctctctctcgac  11088400         <--------P        <---------MYB52(1)      --------->HSFB2a(2)           --------->ATHB12      <---------HSFB2a(2)    --------->ARR14(2) ----->ZmHOX2a(1)  --------->YAB1 <---------MYB52(1)            <---------ANAC58 -------------->AGL15        <---------ARR14(2)                 <---------ANAC58 ---------------AGL15        --------->GLK1(2)       --------------------->WRI1 ----------------AGL3       <---------GLK1(1)   --------->ARR11(3)               <---------ANAC46 ----------------AGL2      <------ZmHOX2a(1)    <---------ARR11(3)    --------->ANAC55(2)   tcctacttctggtaagttctattagaataggaatccgttgattagaataagttctctctgaaattttcgttcatgtgatagtctcgtcgattttgttctc  11088500                                                          <-------MYC3                                                          ------->MYC3                                               <---------YAB1                                         <---------YAB1   ------->MYC2                        <<<<<<<                                         <---------AHL20(2)                 <---------At4g35610                                         --------->AHL20(2)                 <---------ZAT2    <<<<<<<                            <----------DOF2  --------->YAB1       <----------DOF2<---------ANAC46 <-- <---------ZAT6      <----------DOF2  <----------DOF2     <-------MYC2 <---------GLK1(1)    xxxxxxxxx   tcagtgttgatgcaacttcatcgctttgttctttgctattcttttaattgtgattctgcatatgcttcctttgatttcagcttgtgggtttgtccaaatt  11088600                                           <-------MYC3                                       <---------ATHB12                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <<CBP60g                             ------>MYB83                         <---------ZAT6      ------ <<SARD1       <-----------GT1        ------>MYB46(1)              --------->GLK1(2)         <------- ---------GT1<-----------GT1          -------->P                  <---------GLK1(2)          <------- xxxxxxxxxxx>smallRNA(fl3)  <----------DOF2------->MYC3     ----------->HVH21              --------->ARR11(3)   tcacttgtttgctattttctctctcccttcctttgatgccaaccatgtgtttgatgaaatgcctcacagaatatgtagagtttgtttttggtagagcttg  11088700                                     <------MYB83   <---------ANAC46                  <------MYB46(1)                                 --------->DOF5.7(2)   <---------ANAC58               <---------ANAC46                                   <---------MYB52(1)   <---------ANAC58          <-----------RAV1(1)                                    --------->TOE2(3)   <---------ANAC55(1)    <---------ARR14(2)                                        --------->TOE1(3) <---------AHL20(2)       --------->ARR14(2)                                       ----------->GT1 ----->GT1               <---------GLK1(1)                                        <---------TOE2(3) --ANAC58        <---------YAB1   <---------ANAC58   <---------At4g35610 --------->ICU4            <- --ANAC58      <---------AHL20(2) <---------ANAC58   --------->At4g35610<---------TOE2(3)         ---   taattacttgtgtctgtttatttttggatatatgctgcttggtgtttatgtatggagctaagtgtgtgttctctaatgtttataaacgttaattcaagag  11088800                                      -------->ATHB1                                      <---------AHL20(2)                                      -------->HAHB4                                      --------->ATHB51                                      <---------ICU4                                      --------->ATHB12                                     <---------YAB1                                     <---------ATHB51                                   <--------ATHB1                                   -------->HAHB4                                   --------->ATHB51                                   <---------ICU4                                   --------->YAB1                                               =====                                   <--------HAHB4                                               <----                                  --------->AHL20(2)                                           <-----                                  <---------ATHB12                                             <-----                                  <---------YAB1                                               <-----                                  <---------ATHB51                                            <------                                  --------->ICU4                                           <---------                            --------->ANAC58                                        --------->LBD16                            --------->ANAC46                                       <---------ANAC55(2)                            --------->ANAC58                      --------->ZAT14  <---------ANAC58                         <-------TEIL--------->ICU4               <---------ZAT14  --------->ANAC55(2)         <---------LBD16--------->CCA1(2)                <---------ARR14(2)        <---------ANAC58 ------TEIL            <---------ARR14(2)                <---------GLK1(2)         <---------ANAC46 < ------>CCA1(2)        --------->ARR14(2)                --------->ARR14(2)        <---------ANAC55(1)   atacaatctaatcgggagcattacagatacaagctaataattattgatactggattttagatactctctgtactacttgttgattccgtgtctgtgttgg  11088900  Previous    Next  AGI:  At2g26000.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (ubiquitin-hydrolase) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G42160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47090.1); contains InterPro domain BRCA1-associated 2 (InterPro:IPR011422); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 11088380    to: 11092408    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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