Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <<<<<<<GRF7                             <-----------HVH21                            --------->DEAR3(1)                           --------->HSFC1(2)                           --------->DEAR3(2)                           --------->HSFB2a(1)                           <---------HSFC1(2)                           <---------HSFB2a(1)                           --------->MYB46(3)       <---------ARR14(2)  <------------AtMYB77    --------->ANAC58     --------->ARR14(2)    --------->ANAC58  --------->ANAC55(2)    --------->ANAC46  --------->ANAC55(1) ----->P              --------->ANAC58    <---------At4g35610             --------->YAB1 --->At4g35610        --------->ANAC58 --------->At4g35610          --------->YAB1 ----At4g35610        <---------ANAC55(2) --------->At4g35610 <------ZmHOX2a(2) -->ANAC58            --------->ANAC46 <---------At4g35610   <---------ARR11(3) -->ANAC58  <---------MYB52(1)    ----------->HVH21          --------->ARR11(3)                 ----- ->DOF2--------->ARR14(2)<---------ARR14(2)   -------->P<---------ATHB12 <---------ATHB12       -----   taccatacgaaaccggtatcgaagacggaaccgtccctgacatctgcttaccctctaaatcaagatcaaatcacaatcagtaagttttcaattccaaacc  11082300                                           ------->TEIL            ------>ZmHOX2a(1)                                        <---------MYB52(2)         <----------DOF2  <---------ICU4                             --------->ARR11(3)                   --------->TOE2(3) --------->YAB1                             <---------ARR11(3)      --------->CCA1(2)             <---------YAB1                       ---------->DOF2--------->MYB52(1)  --------->At4g35610    --------->YAB1 ---->TOE2(3)     ----------->GT1 ---------->DOF2   --------->ARR14(2)           <---------ICU4 ---->TOE1(3)---------->DOF2<---------RVE1(1)       <---------ARR14(2)     <-----------GT1    >>>>>>>   ctaaattccataaacaaaagaagttaaaagagattttaaagaacgaaccagagggatatgagctaaatcctttgttgtcaccataatcataagaagcacc  11082400                                                            <----------DOF2                                                     <---------ANAC46                 --------->MYB46(3)                                           --------->ZAT2   <---------DAG2      <---------GLK1(1)           <------ZmHOX2a(1) <----------DOF2         <---------ANAC58           --------->GLK1(1) <-- >>>>>>>>>>LFY           --------->At4g35610         <---------ANAC58   --------->WOX13(1)     <-----   attgtcaacacgaggacgtttagcatcagcgctattaagaagacgagcagcgatttcttgtgctttttgtttagcaatctggatttcatccatcggagga  11082500                                        --------->ALFIN1                                      <---------ANAC46                                     <---------DEAR3(1)                                     <---------AtMYB61                                     --------->ALFIN1                                    --------->ZAT18                                    <-------TEIL                                   --------->ALFIN1                                 <------MYB83                                 <------MYB46(1)----------->RAV1(2)                                --------->MYB111(2)                                <---------AtMYB61                                --------->MYB111(1)                                    <------MYB83                                --------->MYB46(2)                                     <------MYB46(1)                                --------->MYB55(2)               ------>ZmHOX2a(2)    --------->MYB59                                <---------DEAR3(1)              <---------At4g35610   <---------AtMYB61                                --------->MYB52(2)              --------->At4g35610  <---------MYB55(1)                                <---------MYB46(3)       --------->At4g35610         <--------P                               <--------P    <------ZmHOX2a(2) --------->ARR14(2)   <---------MYB52(1)     <-------GAMYB             <---------MYB55(1) ------->GAMYB<---------ARR14(2)  <---------RAP2.6(3) ----ZmHOX2a(1)               <---------MYB52(1)--------->At4g35610   <-----------RAV1(2) <---------DEAR3(1) -ZmHOX2a(1)        --------->ALFIN1<---------ABI4(1) <---------At4g35610      --------->GLK1(2)   ggaacgctgttgtaagaagaaggtggaagaccggtaggtgcggtgggatcaactgaagcagatgggatcggaccagaagagaagccggtaggtctgcgag  11082600                 <------MYB46(1)                 <------MYB83                 <---------DEAR3(2)                                            --------->ATHB12                 <---------MYB46(3)                                            <---------MYB46(3)                <---------MYB46(3)   <-------GAMYB                        ------>NtERF2                <---------AtMYB61   --------->MYB52(2)                    <------NtERF2               <---------MYB55(1)   --------->MYB55(2)                   --------->ANAC46               <--------P           <---------MYB46(3)                   --------->ANAC58               <---------MYB52(1)   <-----------RAV1(1)                  --------->RAP2.6(2)              <-------GAMYB       <---------MYB52(1)                     --------->ANAC58             <---------MYB46(3) <---------ANAC58                <---------TOE2(3)          ------------>AtMYB77  <---------ANAC46     --------->At4g35610--------->SPL7         <------ZmHOX2a(1)      <---------ANAC58 <---------ARR14(2)   <---------SPL7       --------->ALFIN1    --------->ARR14(2)    --------->ARR14(2) <-------TEIL        --------->At4g35610      <------ZmHOX2a(1)    <---------ARR14(2)    --------->GLK1(2)<---------GLK1(2)     <---------At4g35610   ttgatggaggaggagcggttggttcttcgtatttgcgtttgttggagtaagtatccgatgagtattgagattcgtccgccatggttgaagagctgatttg  11082700                           <------ZmHOX2a(1)                               ----------->TBP                         <---------TOE2(3)                               <-----------TBP                         --------->ANAC58                                --------->AHL20(2)                       --------->CCA1(2)                                 <---------AHL20(2)                    ----------->ARR10                                --------->AHL20(2)                  --------->LBD16                              --------->ANAC46                 <---------DEAR3(1)                            --------->ANAC58                 <---------ANAC46                              --------->ANAC55(2) ------>NtERF2                <---------LBD16>>>>>>>>>TBF1                   --------->ANAC58 <---------LBD16          ---------->DOF2--------->ANAC58      *TSS----------->GT1  --------->ICU4--------->LBD16  --------->GLK1(1)<------NtERF2           --------->MYB52(1)<---------ALFIN1--------->CCA1(2)    <--   agagaaaccctagaaagaggcggagataaggaagaagaaggaaaacaactgagaggtgaacacacacgcgattatttatatatgcggacaaaaaccttgc  11082800                <---------RVE1(1)                <---------CCA1(1)               --------->ARR11(3)       <---------ARR11(3)       --------->ARR11(3)        <----------DOF2       --------->AHL20(1)     <-----------GT1      <---------AHL20(2)  <---------DAG2         <---------DAG2                        <-----------GT1    --------->AHL20(2)    <----------DOF2   <---------At5g28300                      <-----------GT1    <-----------TBP   ---------->ID1       <-----------GT1     <----------DOF2   <----------DOF2    <---------AHL20(2)<-----------GT1  <---------YAB1       <-----------GT1      <---------DAG2  <-----------TBP    <-----------GT1 <---------AHL20(2)  <---------ICU4       ------->TEIL -----GAMYB    <---------ARR11(3)<---------DAG2  <----------DOF2              <-----------GT1      <-   tgttatatatatattcagatatttttccctttttactttttatttttaccgcttttccatttttacttttgttaactatgtaacttttttctctctctac  11082900                                                                                            ---------                                                                                            <xxxxxxxx                                                                                          xxxxxxxxxxx                                                                                        <---------YAB1                                                                                        --------->ICU4                                                                                      <---------ICU4                                                                                      --------->YAB1                                                                                      -------->HAHB4                                                                                     <---------YAB1                                                    <---------AHL20(2)               --------->ICU4                                               <---------YAB1                        <xxxxxxxxxxxxxxx    <---------YAB1                         <-------GAMYB                           -------->HAHB4  xx  --------->YAB1                          <---------MYB46(3)                       --------->YAB1 xxx  <---------ICU4                       <---------ANAC46             <-------TEIL   <---------ICU4<xxx --------->ICU4                   <---------ICU4    --------->AHL20(2)            --------->ICU4<xxxx --------ICU4   <---------TOE2(3) <-----------GT1  --------->AHL20(2)           --------->YAB1 xxxxxx   ataattatgtttttttttaagaaaaaaatcgcttaattactacgtggttgtgatttaatttagttttatattcatttttgaataataatgatgatggtga  11083000               <---------WOX13(1)              >>>>>>>>>GATA-1              >>>>>>>>>GATA-3              >>>>>>>>>GATA-4              >>>>>>>>>GATA-2           <---------ANAC46         <---------MYB46(3)       <---------ANAC58       <-------GAMYB      <------MYB83      <------MYB46(1)      <---------MYB46(3)   <---------ANAC58   <---------ANAC46   <---------ANAC58  ----------->GT1                                                     <xxxxxxxxxxx -->GT1<---------ANAC58                                                           <---------ARR11(3) xxxxxxxxxxxxxxxsmallRNA(si3)                                            <---------ARR14(2) xxxxxxxxxxxx>smallRNA(si3)   <---------YAB1                             <---------GLK1(2) xxxxxxxxsmallRNA(le3)      --------->YAB1                       <-----------RAV1(2)------>ZmHOX2a(2) xxxxxxxxxxxxxx>smallRNA(i) <---------ICU4                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxx>smallRNA(i) <---------YAB1                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ICU4            <---------At5g28300       --------->ARR11(3) xxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <-----------GT1   --------->ARR14(2) <xxxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(si3)                   <----------DOF2      xxxxxxxxxxxxxxxx>smallRNA(i)   ttttggcttggttgtggattgaaaagtttatcatgatgttgttgaattcttctctttttactgtgtttcaggtcggattctcttgatcttctccatcaag  11083100                                                                                                 xxxx                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                   <---------ARR11(3)                                                                                   xxxxxxxxxxxxxxxxxx                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->ARR11(3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxxxxx                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxxxx                                        ------>ZmHOX2a(2)                       <xxxxxxxxxxxxxxxxxxxx                                      <---------ARR11(3)           <----------DOF2<xxxxxxxxxxxxxxxxxx                             --------->ARR14(2)         --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxx                   <-----------GT1    --------->ARR11(3)<---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <----------DOF2   <---------GLK1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    ------>ZmHOX2a(1) xxxxxxxxxxxxsmallRNA(i2)<---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ----------->RAV1(2)   ttttaagtatgttcttttttttttctcatcggattctcttgatcttctccatcaaattttaaatatgttcttttttttttctcaagttctcctggctttt  11083200  Previous    Next  AGI:  At2g25970.1    Description:  KH domain-containing protein. similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G10070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43782.1); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 11078729    to: 11082747    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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