Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->AtMYB61                                                                    -              --------->MYB46(3)                                                                    -    <---------YAB1                                                                                  - --------->RAV1(2)                                                                                --- --------At4g35610                                                    -------->P        --------->WOX13(1) ------->At4g35610                                      ---------->DOF2    <---------GLK1(2) -------- ------->ANAC55(2)              --------->LBD16      <---------ANAC46--------->WOX13(1)<---------AHL20(2) --------ANAC55(2)       ------>ZmHOX2a(1)   <---------ANAC58       --------->MYB46(3) --------->AHL20(2) --------GT1 --------->SPL7   <---------LBD16<---------ANAC58  <---------ALFIN1        ---------->DOF2   cacctgatcaatgcgaaccacaacttcctctctccgcatagtttcttccttgctctcgtagagcccctcatcaaccagaaacttcacaataaatcagcca  11037300           <---------ARR11(3)    --------->ANAC58                  --------->ATHB12    --------->ANAC58                 <---------YAB1 -------->ANAC46            --------->ANAC58 -------->ANAC58            --------->ANAC58                       --------->ANAC58 -------->ANAC58          ---------->DOF2                     --------->ANAC46 ------->DOF2           ------>ZmHOX2a(1)          <----------ID1  --------->ANAC58          <------- ->At4g35610            --------->LBD16    <----------ID1     --------->YAB1               <---------   aaacgcaagtcaatatcacattgttcctgaaagcaatttttcattggaacaaaaaaacaaacaaacacaacgctaaccttctctagttccaaattacgct  11037400                                                                                                  <--                                                                                                <----                                                                                               <-----                   --------->ANAC58                <---------------AGL15                       <-----                   --------->ANAC58            <---------CCA1(2)                               ------                 <-------TEIL              ------>ZmHOX2a(2)                                  -------        --------->At4g35610           --------->LBD16               <---------At5g28300      <-------     <---------At4g35610             <---------ANAC46              <-----------GT1         <---------ANAC58     --------->At4g35610             --------->ANAC55(2)        <----------DOF2            <---------ANAC58 --YAB1 <---------At4g35610          <---------ANAC55(2)     --------->GLK1(2)            <---------DEAR3(1) --GT1 ----------->RAV1(1)          <------NtERF2  --------------->AGL15                <---------SPL7   taacatcagcagcagaaggtccagcaatagacagtggctccgtgatcccatagctcttaagagaagcttttaccggttgagaagagtcatcgtccgtgcg  11037500                                                                               <---------YAB1                                                                              ------>ZmHOX2a(2)   <---------ANAC58                                                         <---------AGP1   <---------ANAC58                                                         <---------ARR14(2)  <---------------AtSPL8               <---------ARR11(3)                   --------->ARR14(2)  --------------->AtSPL8               --------->ARR14(2)            --------->CCA1(1)             -- -------MYB46(3)                       --------->GLK1(2)             <---------GLK1(1)            --- ---GAMYB               <---------ANAC55(2)           --------->ANAC58--------->ARR11(3)          <-- ----ANAC58             --------->ANAC58   ------>ZmHOX2a(1)         --------->RVE1(1)          ----- ----ANAC58             --------->ANAC58  --------->TOE1(2)          --------->GLK1(1)         ====== --->MYB52(2)          <-----------------------TaNAC69(2)           <---------ARR11(3)         <----- -->SPL7 --------->ANAC46              <---------ARR14(2)           --------->ARR11(3)        ------- --MYB52(1) <---------ICU4    --------->ZAT6          --------->ANAC58<---------ARR11(3)      <------   ttgttgagtactcaccatgacaagacgcgtaaacactagaaaatcctaggcgattcaagcacaaaatatagatatctcgatctgattaagcacccagatc  11037600         <---------GLK1(2)     <---------LBD16 <---------YAB1 ------->YAB1 ------>ICU4                                                            ---------->DOF2 -------YAB1                                                          ----------------->AGL1 ---->YAB1--------->GLK1(2)                                         ------------------------>ANAC81 =========================HOX2a_HOX2a                               <----------ID1     --------->DAG2 -ZmHOX2a(2)                  <----------DOF2                   ---------->DOF2       ---------->DOF2 -->ARR11(3)       <------ZmHOX2a(1)                        <------ZmHOX2a(1)   ---------->DOF2 ---ARR11(3)  --------->MYB52(1)                           ----------->GT1     <------ZmHOX2a(1)   atgataattcggaatctaacaggaattggagactttagagtcatgggagagagattgaagaaggagaaaagagccaaaggaggaaagaaaaagtgagaga  11037700                               --------->TOE2(3)                                                    <                               --------->TOE1(3)                                                   --                            --------->GLK1(1)                                                      <-                            <---------GLK1(1)                                                     ---                  --------->ANAC58                                                          ---------        ------------------------>ANAC81     <---------ARR14(2)                            --------->At4g35610      ---------->DOF2      --------->ARR14(2)         --------->ARR11(3)           ---------->DOF2---     *TSS         --------->ANAC58---------->DOF2 ---------->DOF2       ---------->DOF2---------->DOF2   agagcgagaaaagctcgaaaacgaaatcggaaaccctaaatcgatggatagggaaagctctcgactggaattttcaaagggaagtcaaagaaagcggaaa  11037800           --------->AHL20(2)     --------->ANAC55(2)    <---------LBD16  <---------SPL7 --------->YAB1 ---------YAB1                                                             ----------->GT1 ------->ARR11(3)                                          <------ZmHOX2a(1) --------ARR11(3)        <---------ANAC58              ---------->DOF2     <---------MYB46(3)   ----- ------>RVE1(1)          <---------ANAC58           --------->ANAC58   --------->ATHB12        <----- -->GT1    <---------AHL20(2)   ---------->DOF2     --------->ANAC58  <---------AHL20(2)     ------->GAMYB ------>CCA1(1)     <---------ICU4              <------ZmHOX2a(1)     <---------YAB1      -----------   atatcatacggattaaaatcaattttgacttgttcaaagaagggagagaaggagaagcaaaggacaatagtttttattggttaaatcgaattcaacagaa  11037900                                                                                                  <--          <<<<<<<<<<WRKY38                                                                       <---          <<<<<<<<<<WRKY26                                                                       ----          <<<<<<<<<<WRKY43                   <-----------HVH21                           --------->LBD16    --------->ATHB12            <---------ARR11(3)             --------->AtLEC2        <---------LBD16   <---------AHL20(2)    ----------->GT1  <---------LBD16     --------->TOE1(2)       <-----------GT1 ---->GLK1(2)--------->At4g35610--------->GLK1(2)       --------->REM1(2)            <-----------GT1 ----GLK1(2) <---------At4g35610--------->ARR11(3) <---------ZAT2                <---------ARR11(3) >RAV1(1)<-----------HVH21     --------->RVE1(1)   --------->ZAT2                --------->ARR11(3) -   tatgttttattggtcatctgattttggaggtaaaaatcttcaaacccggtcccaactgtgttgacatgcgaatgcgacccaaggatttttccggttcgat  11038000               --------->ANAC58      --------->LBD16      ----------->GT1             <-----------GT1            <---------ALFIN1    ------>ZmHOX2a(2)           <---------GLK1(1)           <------NtERF2                         >>>    <---------LBD16           <---------ICU4              --------->RAP2.6(2)                     >>>  --------->ARR14(2)          --------->ATHB12          <---------ATERF1(1)                       <--  <---------ARR14(2)   ------->TEIL                     <---------ZAT2                           ---- -----GAMYB  ---------->DOF2 <---------YAB1             --------->ZAT2                           ---- ------MYB46(3)--------->ANAC58 --------->GLK1(1)     <---------ALFIN1                           ---- -->ZmHOX2a(2)--------->DAG2 --------->ICU4        --------->ANAC46                   ----------->GT1 -------->WRKY12    <---------ATHB12      <----------DOF2 --------->RAP2.3(3)        ------>ZmHOX2a(1)   cgttgatccggtttaaaaagcaatgaatttcatgatttccccttctttcttatcccccagcccccaattcatttttctcatatggtcctggtaaaaatgt  11038100            <---------YAB1                                                                     ------      --------->LBD16                                                                          ------   ------>MYB83                             --------->YAB1                           --------->ANAC46   ------>MYB46(1)                          <---------ICU4                           --------->ANAC58 >>>>>>>WRKY11                           --------->YAB1                            ---------->DOF2 >>>>>>>WRKY6                           <---------YAB1                       ------>NtERF2     <----- -------WRKY18(1)                      <---------AHL20(2)                   <---------ALFIN1  ------- ----->WRKY38(1)                       --------->AHL20(2)                  --------->MYB46(3)*TSS  -- ----->WRKY45         <---------ICU4<---------ARR11(3)               ------->TEIL<----------DOF2   <- ----->WRKY12--------->YAB1         --------->ARR11(3)              <---------CCA1(2)--------->ANAC58   tgaccatccggtttatgataaaaatcattttcggtttagattttaataatctcggttcgatttagtatttgtatctccccaccctttaagccagaagtgc  11038200  Previous    Next  AGI:  At2g25850.1    Description:  nucleotidyltransferase family protein. similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.2); similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.3); similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.6); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45810.1); similar to putative polynucleotide adenylyltransferase [Oryza sativa (indica cultivar-group)] (GB:AAW68015.1) Range:  from: 11032934    to: 11037705    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g25870.1    Description:  haloacid dehalogenase-like hydrolase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO43749.1); contains InterPro domain HAD-superfamily hydrolase, subfamily IIB; (InterPro:IPR006379); contains InterPro domain Cof protein; (InterPro:IPR000150); contains InterPro domain Protein of unknown function UPF0054 (InterPro:IPR002036); contains InterPro domain HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200) Range:  from: 11038193    to: 11041532    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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