Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ETT(2)           ------->TEIL                                <---------DAG2         ------->GAMYB                                <---------HSFB2a(1)        --------->ANAC58                              --------->HSFB2a(1)        --------->ANAC58                             ------->TEIL       ------>MYB83                                ------->GAMYB       ------>MYB46(1)                            <---------MYB52(2)     <---------ALFIN1                             --------->MYB46(3)                ------>NtERF2  <-     --------->AtMYB61                          --------->MYB52(1)                 --------->DEAR3(1)     --------->DEAR3(1)                      --------->TOE1(3)                    <------------------ >TOE1(2)<---------ZAT18    ------->TEIL <---------At4g35610            <---------HSFB2a(2)  --------   aatagcaccaacgcacttctaatctatatgaacccacaaactcagaagcttaacgaacctttcgaccagcgattttggaagaacgacgacccatacaaag  11028500                                                                          ----------->HVH21                                                                         --------->At5g28300                                                                         --------->LBD16                                                                      <---------At4g35610                                                                      --------->At4g35610                                                                      ------>NtERF2                                                                      --------->ZAT2                                                                      <---------ZAT2                                           --------->ARR14(2)        --------->DEAR3(1)                                   --------->LBD16                <---------bZIP60(2)                                  <---------ANAC58                --------->ANAC58                                  <---------ANAC46             ----------->HVH21                                  --------->HSFB2a(2)     <---------MYB46(3)                                  <---------ANAC58       <---------WOX13(1)                              <---------ANAC58      <---------At4g35610 <---------ANAC46                              <---------ANAC58      --------->At4g35610 ----------->GT1       ------- -----ZmHOX2a(1)         <---------REM1(1) <---------ARR14(2)  ----------->TGA1             <-------- ---WRI1     <---------ARR11(3)   <---------HSFB2a(2) <---------YAB1--------->ATERF1(1)     <-------- -->DOF2     --------->ARR11(3)  <---------LBD16<-----------HVH21 --------->ANAC58          ---------   aggagttgaaatcgaaatctttctgagttgaagcttgcggaagcagttctggtcatctgattgttgtgacgcagccgtgaaatgcgaagtagtagtgtgg  11028600                                                                                         >>>>>>>>>>>>                                                                                         <<<<<<<<<<<<                                                                                         ------>NtERF2                               --------->WRKY18(1)                                      --------->ANAC58                             <------MYB83                                               --------->ANAC58                 <---------TGA1a                                               <---------HSFB2a(2)                 ===================MYC_MYB                                    --------->HSFB2a(2)                 <---------O2<------MYB46(1)                                --------->ARR14(2)      -                 ===============================================MYC_MYB     <---------ARR14(2)      <               --------->CCA1(2)                                <---------ANAC46      --------->CCA1(2)              <----------ID1<---------AtMYB61                 <---------ZAT18 ======================= -->ALFIN1---------->DOF2<-----------RAV1(1)               --------->MYB52(2) ------>ZmHOX2a(2)     - -ANAC46  =================bZIP_DOF                      <--------P         --------->ARR11(3)      < -ZAT6 <---------TOE2(3) --------->ALFIN1               <-------GAMYB       ------->TEIL--------->ANAC46 >ALFIN1 <------ZmHOX2a(1) <--------P   --------->ZAT6 <---------MYB46(3)   <---------AGP1         <-   ggagagattgaggaaagagacgagagagtgttggtcatggtaagactaagaagacgatggttagtggagttgagaatggatctggaagagacgccattgg  11028700                                                            <---------TOE2(3)       <------ZmHOX2a(1)                                >>>>>>>>>GATA-1 >>>>>LFY                                               >>>>>>>>>GATA-3 <<<<<LFY <------ZmHOX2a(1)                             >>>>>>>>>GATA-4                  <---------GLK1(1) -------->GLK1(2)                                       >>>>>>>>>GATA-2            --------->WOX13(1) -----------ARR10                                <---------ANAC58                ------------>CBF =============HOX2a_HOX2a                        <---------ANAC58            *TSS<---------ATHB12 -------->ARR14(2)                            <----------DOF2               ----------->GT1 ---------ARR14(2)                --------->ANAC58    <XXXXXXXXXXXXXXXXXXXXMIR851-5P <---------ATHB12 --------GLK1(2)                  --------->ANAC58 <---------ANAC46        <---------TOE2(3) --------   agaatctgaggaggattactctcatggagcaatgggaggccatatagtctttggtgtggattgagaatagagggaatgaggtaatcaatcgatttctcaa  11028800                                                                   <---------ANAC58                                                                   <---------YAB1                 --------->ANAC58                            --------->DAG2                 --------->ANAC58                           ---------->DOF2            <---------TOE1(3)                        <---------ANAC58        <----------DOF2   <------ZmHOX2a(1)          <---------AtLEC2                               <   <------------CBF       --------->YAB1             <---------ANAC46    <---------YAB1       <------ <---------AHL20(2)   --------->TOE1(2)        <----------DOF2     <---------ANAC58        <--------- ---->CBF   <---------TOE2(3)     ----------->GT1    <---------ANAC58<------------CBF  <---------GLK1(1)   tgttatattggtttaaggtaagaaactaggataagcgagtaaaaaacttctttttgcttggaaaaagttgcgattgtgattttgacttgaaatctgttgt  11028900               --------->ANAC58               --------->ANAC55(2)      ----------->HVH21     <-----------HVH21    <---------O2    --------->TGA1a    <---------TGA1a    <---------ANAC46    =============================================bZIP_DOF    --------->bZIP60(2)                   <---------ANAC58    --------->O2                          <---------ANAC58   ------>NtERF2                      <----------DOF2              <---------HSFB2a(2)   --------->LBD16            ------>MYB83<---------ANAC46         --------->HSFB2a(2)  --------->DEAR3(1)        --------->AtMYB61                 <<<<<<<<<TBF1                  <------- ---------At4g35610       *TSS------>MYB46(1)           <---------ATHB12        ---------->DOF2 ---MYB46(3)   --------->ANAC58   ------>ZmHOX2a(1)    <---------ARR14(2)       ===================== --RAV1(1)   --------->MYB52(1)<---------ATHB12        --------->ARR14(2)       =====================   tgagccgcgtgaccctcacggactcaaaaaccaatccttcctttgcttataaaccccaatcttcttcttcgagagagagagtgaaagagaagaaaacgac  11029000           --------->TGA1a           <---------O2           --------->O2           <---------TGA1a      --------->ANAC58      --------->TGA1a      --------->ANAC55(1)      --------->ANAC58      --------->bZIP60(2)      --------->ANAC46      --------->O2                                     --------->O2    <---------ATERF1(1)                         <---------GLK1(2)    <---------ALFIN1                         <-----------RAV1(2)                            --------- ---ID1   ------>NtERF2                    ------>ZmHOX2a(1)                               ------>MYB46(1) ====================bZIP_DOF      ------>ZmHOX2a(1)   --------->TGA1a                     ------>MYB83 ===============bZIP_DOF     ------>ZmHOX2a(1)--------->LBD16        --------->ZAT6       <---------ALFIN1   aatgggacacgccacgagtctctctcacttcctcatcctctcttcctccaggttctctcgtctcgggtctctcactagattactctccaaacccacctct  11029100                                --------->WRKY18(1)               --------->At4g35610                              ----------->HVH21                   <---------At4g35610                              --------->LBD16                <------NtERF2                            <---------At4g35610             ------>NtERF2                            <---------LBD16                --------->DEAR3(1)                            --------->At4g35610            <---------ETT(2)                           --------->MYB52(1)           --------->DEAR3(1)                          <---------WRKY38(1)    <-------GAMYB  <-----------RAV1(2)               <-----------------AGL1  --------->ARR14(2)<---------ATERF1(1)               --------->MYB52(1)   ------>NtERF2          <---------WRKY12      ============================RAV    <---------HSFB2a(2)   --------->LBD16       ----------->HVH21      <-----------RAV1(1) ----------->HVH21 ---------->DOF2 <---------LBD16----------------->AGL1 <---------ARR14(2)<-----------HVH21      ------>ZmHOX2a(1) >O2    <----------DOF2 <-----------HVH21  <---------At4g35610----------->RAV1(1)  --------->HSFB2a(2)   ctctccggctctttttcttccatttcggtcaccggacaagggttccgatgctgttgctccgtcgccacagatgacacttctccttctgtaaagtaatggc  11029200                                                                                  --------->ALFIN1                                                                                 <-------MYC3                                                                                --------->TGA1a                                                                                <---------TGA1a                                                                                --------->O2                                                                                <---------O2                                                                                <---------ANAC58                                                                                <---------ANAC55(1)                                                                                <---------ANAC46                                                                                <---------ANAC58                                                                            <------ZmHOX2a(1)                                                                           <------MYB46(1)                                                                           <------MYB83    <---------                                                                         <--------P <---------AtMYB61                                                                   <---------YAB1------->MYC3                                                            =======================HOX2a_HOX2a       <----------DOF2                                      ------>ZmHOX2a(2)  <---------------------  ----------->RAV1(2)                      ===============================================MYC_MYB -------->P                                <-------GAMYB<---------YAB1   =================MYC_MYB   ctctacctgcttctagtttctattacttcttagctatgcattctctgttgaattcattctgatcccattttgatggtaggaaacgtgtggtctctggtgt  11029300                           <---------MYB52(2)                      --------->ANAC58               --------->ZAT14               <---------ZAT14               <---------ZAT18             --------->At4g35610 <---------LBD16                               <----------DOF2 <----- --RAV1(1)<-------TEIL--------->ANAC58    --------->YAB1        <---------GLK1(2)        <---------YAB1 --TaNAC69(2)<---------At4g35610<---------LBD16              <-----------RAV1(2)      --------->ICU4   ccagcctacaggttcagttcacttaggcaactatctcggggctatcaaaaactgggtcgctcttcaggttctctctctctcctttgccattatgctaatc  11029400  Previous    Next  AGI:  At2g25830.1    Description:  YebC-related. Identical to UPF0082 protein At2g25830 [Arabidopsis Thaliana] (GB:O82314;GB:Q93ZW2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44020.1); contains InterPro domain Protein of unknown function DUF28 (InterPro:IPR002876); contains InterPro domain Integrase, N-terminal zinc-binding; (InterPro:IPR003308) Range:  from: 11025794    to: 11028777    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g25840.1    Description:  OVA4 (OVULE ABORTION 4); ATP binding / aminoacyl-tRNA ligase. similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305); contains InterPro domain Aminoacyl-tRNA synthetase, class I, conserved site; (InterPro:IPR001412); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 11028926    to: 11032448    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version