Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -            ----------->GT1                                                                         <           <---------TOE2(3)                                                                        <           <---------YAB1                                                                           -      --------->AHL20(2)                                                                       ------     --------->AHL20(2)                 --------->At4g35610             =============================  --------->AHL20(2)        <---------AHL20(2)                          <---------------AGL15 xxxxxxx  <---------AHL20(2)        --------->AHL20(2)                        --------->YAB1         <------ZmHOX2a(2) ------->AHL20(2)          --------->AHL20(2)             --------->AHL20(2)            xxxxxxxxxxxxx ------>AHL20(2)     --------->YAB1     <---------At4g35610 <-----------GT1           xxxxxxxxxxxxxxx ->GT1<---------AHL20(2)   --------->YAB1                 <---------AHL20(2)      <-----------GT1   -   ataaaaaattaatatggttagaataagaattaaaatatagttagatgaaaacatggacattttaatcgtttttcatattagaagtaactagatggatcat  10959300                                                             <---------------AGL15                                                             --------------->AGL15                                                            ----------------->AGL1                                                            ----------------->AG                                                            <-----------------AG                                                            ----------------->AGL2                                                            <-----------------AGL1                                                   --------->At4g35610      --------->MYB46(3)                           <---------ZAT2                --------->WOX13(1) -------->ZAT2                                     <---------At4g35610     ------>MYB83 ---------ZAT2                                     ----------->RAV1(2)   <---------MYB59 ---------At4g35610                                --------->ZAT2       --------->DEAR3(2) ---------->RAV1(2)                        ------->TEIL     <-----------------AGL3 --->WOX13(1)  ---------->DOF2        --------->At4g35610   ----------------->AGL3 ============================================================================MADS_MADS xxxxxxxxxxxx>smallRNA(le3)           <---------At4g35610   <-----------------AGL2 xxxxxxxxxx>smallRNA(i2)           <---------MYB52(1)      -------->P <---------ARR14(2) --------->AHL20(2) xxxxxxxx>smallRNA(l2)        ------------>MYB.PH3(1)    --------->MYB46(3)------>MYB46(1) -------->At4g35610     <---------TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------YAB1   tcagctgaacaaacaaacaaagttttaatgaaaaacagttagatgaatcatccagctgaactaccaaaaatggaaccgaacatcattcagataaattagt  10959400                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                           <---------ATERF1(1)                                                                                           <------NtERF2                                                                                         --------->ALFIN1                                                                                         --------->ATERF1(1)                                                                                         <---------RAP2.6(2)                                                                                         <---------AtMYB61                                                       <---------MYB59                 <---------ANAC58                                               --------->MYB52(1)                      <---------ANAC46                              ------->TEIL   <---------MYB52(2)                        <---------ANAC58                              <-------TEIL --------->MYB52(1)         <---------ZAT6--------->ALFIN1                 <---------GLK1(2)  --------->LBD16 <------ZmHOX2a(1) ----------->GT1  <---------bZIP60(2)  --------->TOE1(2) --------->ARR11(3)     <xxxxxxxxxxxxxxxxsmallRNA(s)           <-----------RAV1(1)   caaatgtacgatttggatagattatctagatgtacatccgagagcaaacgaacaggacctaaaattgggctagtgtaataaacaatgtggggtggccggc  10959500 -NtERF2 ---RAP2.6(3) --DEAR3(1) ->ATERF1(2) ->RAP2.6(2) ->DEAR3(1) --RAP2.6(2)               ---------->DOF2              --------->ATHB12 --ATERF1(2)           --------->TOE1(3)               <---------AHL20(2)             <---------ANAC58 -ANAC58               --------->TOE2(3)   <-----------TGA1                           <---------ANAC58 >ATERF1(1)     --------->YAB1       <----------DOF2   <---------YAB1                 <---------ANAC46 -ANAC58       --------->ICU4     <-----------GT1<---------AHL20(2)           <---------YAB1   cagattaatgcagagaaattataagccttaaaagtttttctttctcgtcattttttttttattggagtccaaaactcagtataaatgggcttgtattggg  10959600                                                   <---------At4g35610                                      <---------At4g35610                                      --------->ZAT2                                      --------->At4g35610                                      <---------ZAT2                                    <---------ALFIN1                                  ----------->RAV1(1)     <------------CBF                            <---------ANAC58       --------->At4g35610                            <---------ANAC58       ----------->RAV1(2)                       <-------                    --------->At4g35610           ------->TEIL                               <-------              <------ZmHOX2a(1)   =============================RAV                          <--------      <---------ARR11(3)   <---------ZAT2    ------>ZmHOX2a(1)                     ----------->RAV1(1)      --------->ARR11(3)   --------->ZAT2    --------->At4g35610                  --------->MYB46(3)   cttaactaaatcttgaggaatcagcccagagcttggccacagctctcctctgcatctgagcattgctctcgtttcagattaacaacaacaggtttgctgg  10959700                     <---------YAB1                   <---------At4g35610            <----------DOF2          <------ZmHOX2a(2)         <---------AGP1         --------->AGP1         <-----------ARR10--------->AHL20(2)         --------->ARR14(3)               <-----------GT1         <---------ARR11(3)            --------->TOE2(3)         --------->ARR14(2)            --------->TOE1(3)         <---------ARR14(2)            <----------DOF2                            <----------DOF2       ----------->ARR10  <---------AHL20(2) <---------DAG2            --------->ATHB12 --ANAC58--------->ARR11(3)         *TSS--------->DOF5.7(2)        --------->ATHB12 --ANAC58<---------ARR14(3)    <------------CBF       ---------->DOF2<---------WOX13(1) -At4g35610------>ZmHOX2a(2)  <---------ICU4 <----------DOF2      <---------YAB1  <---------DAG2   ttttaagacaagatctttgtcttctgatttaaaaattgcaactttaactttatacgaatagcagcaagatgattgatttggctactttatagtttaatgg  10959800                   --------->TOE1(3)                    <---------ANAC58                   <---------DAG2                       <---------ANAC58                   --------->TOE2(3)                   <---------TOE1(2)                ------->GAMYB               --------->ARR11(3)               <---------MYB111(2)          <---------ARR11(3)        --------->At4g35610               --------->MYB46(3)           --------->AHL20(1)    --------->ANAC58         <---------            --------->MYB46(3)              <---------AHL20(1)    --------->ANAC58   <----------DOF2   <---------MYB52(1)             <---------At4g35610 ------>ZmHOX2a(1)          <---------CCA1(2)---   aagcagttcgttcaacaacaaccttatctaattttcatctactgaatattttagtcctgcgttctctcaagcctctgcatcgtctatctttctctttctc  10959900                              <---------AHL20(1)                              --------->AHL20(1)                                <---------GLK1(1)                              --------->AHL20(2)                        <---------WOX13(1)    <------  <-----------RAV1(2)         <---------AHL20(2)   <-------TEIL      --------->AHL20(2)       ------- -DOF2 <-------TEIL        ------->TEIL      <---------ZAT14         <---------AHL20(2)  <---------AHL20(2) --->NtERF2         <------ZmHOX2a(1)   <---------YAB1<---------YAB1--------->AHL20(2) <----------DOF2   tgcctcaggttcgaaactattaggacatgtattttattgctcattagtgaagtttcatgtttgaaactgatttaattgatagagttctgctttaatttag  10960000                                                                       ------>ZmHOX2a(1)                                                                   --------->ARR14(2)                                                                  --------->GLK1(1)                                                              ----------->GT1                                                           <-----------RAV1(1)                                                           <---------ANAC58                                                           <---------ANAC46                                                           <---------ANAC58                                                <---------At4g35610<---------ARR14(2)      ---------- ---------AtSPL8  <XXXXXXXXXXXXXXXXXXXXMIR859 <---------CCA1(2)   <---------GLK1(1)  xxxxxxxxxxxxxxx>smallRNA(le3) -------->AtSPL8<---------YAB1          ------->TEIL     <---------ANAC46           <---------TOE2(3)   tacaattttggttttgttttgatttagcaatggagagtgatgcatcttgtagcttagttttgtgtgggaaatcctctgtggaaactgaggtagcaaaggg  10960100                                                         --------->GLK1(2)        --------->YAB1                                                         --------->ARR14(2)     <---------TOE2(3)                                                         <---------ARR14(2)    ---------->DOF2                                                        <---------GLK1(2)  ----------->GT1                                               <---------ATHB12            <------MYB46(1) <---------ICU4                           --------->LBD16     --------------->AGL15       <------MYB83<---------YAB1                          --------->HSFB2a(2)  <---------------AGL15      --------->MYB59 <---------YAB1 >DOF2    <---------ARR11(3)                <-----------GT1            --------->GLK1(2)--------->YAB1   tttgaagaacaagaactctcttaaactcccagataataccaaagtttcactcattttagaatctgaggctaagaatttggttaaagatgatgataattcc  10960200  Previous    Next  AGI:  At2g25710.1    Description:  HCS1 (HOLOCARBOXYLASE SYNTHASE); catalytic. similar to HCS2 (HOLOCARBOXYLASE SYNTHETASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G37150.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61807.1); contains InterPro domain Biotin protein ligase, C-terminal; (InterPro:IPR003142); contains InterPro domain Biotin/lipoate A/B protein ligase; (InterPro:IPR004143); contains InterPro domain Biotin--acetyl-CoA-carboxylase ligase; (InterPro:IPR004408) Range:  from: 10959736    to: 10962455    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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