Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->AHL20(2)           --------->AHL20(2)          ----------->GT1 -------->ANAC46         --------->TOE2(3) ------>ANAC46 <---------AHL20(2)     --------->AtLEC2   --------->TOE1(3) ->YAB1    --------->YAB1--------->TOE1(3)               --------->TOE2(3)                   -------- -ATHB12  <---------ATHB12    --------->YAB1 --------->AHL20(2)                        ---------->DOF2   acacaacattcaataatataaataaaaccctaacatagtcatggaaaaaatataaaaaaccctaattctaaaaacataaaaccaaaaaacaaagaaaaag  10956300                  ====================HOX2a_HOX2a                                <---------HSFB2a(2)                  <------ZmHOX2a(2)                    --------->WRKY38(1)  <---------MYB46(3)              <------ZmHOX2a(1)              <---------TOE2(3)            ------->PIF5      -------->P--------->GLK1(1)        <----------DOF2              <---------At4g35610        ---- -->DOF2  --------->LBD16      <------ZmHOX2a(1)       --------->WRKY12   <-------PIF5           <---   acattactaacccgaaggagatcgaagagagtaggatgatcaactttgacgaaatcgttgtcccaagtcttgagctcgtggttctcggtggaaccataga  10956400                       --------->At4g35610                       <---------At4g35610                    --------->At4g35610                    <---------At4g35610                    --------->ZAT2                                            ----------->HVH21            <---------ALFIN1                                                --------->LBD16            <---------MYB111(2)                                           <------NtERF2            --------->MYB46(3)                                            <---------LBD16            <---------MYB55(2)          <---------ANAC58                  <-----------RAV1(2)         --------->ANAC46               <---------ANAC58              <---------ATERF1(1)     ---------->ARF1<---------ZAT2      <---------ANAC46      <---------HSFB2a(2)                   < <---------ANAC58 ---------->CDC5 ------->MYC3                --------->HSFB2a(2)                  -- <---------ANAC58 <-----------RAV1(2)<---------CCA1(2)    --------->TOE1(3) <---------At4g35610    <- ----->GLK1(1)------>MYB46(1)     <-------MYC3            --------->TOE2(3) --------->At4g35610------ ------GLK1(1)------>MYB83  <----------DOF2 --------------->AtSPL3 <------ZmHOX2a(1)           <-----   aatccttgtctccaccagcctcagcagcggcttcaacgtgtttcttgcagtactcgataaccttcgcgaggatggctccggtgacattgggaagtggaat  10956500                                                                                          <---------GLK1(1)                                                                                          <---------At4g35610                                                                                        <------NtERF2                                                                                      <---------DEAR3(1)                                                                                    <-----------HVH21                                                                                <-----------GT1        --------->ANAC46                                <---------DEAR3(1)   <---------ARR14(2)   <---------DOF5.7(2)                                 --------->RAP2.6(3)   --------->ARR14(2) <---------MYB52(1)                                   ------>NtERF2         <------ZmHOX2a(1) --------->DOF5.7(2)                                  <---------ATERF1(1) <---------TOE2(2)        <- -------GAMYB                  <----------DOF2       ----------->HVH21    <---------TOE1(2)--------->ARR11(3) ------->ANAC55(2)         <-------MYC3        ----------->HVH21     --------------------->WRI1  <--- --------ANAC55(2)         ------->MYC3 <---------HSFB2a(2)       <---------ALFIN1 --------->DEAR3(1) --->GLK1(1)           <------ZmHOX2a(2)--------->HSFB2a(2)     ------>ZmHOX2a(1)<---------At5g28300 ----GLK1(1)       ------>ZmHOX2a(1)  ----------->RAV1(2)------>NtERF2<---------HSFB2a(2) --------->GLK1(1)   tccgttatcgacgcagtcgtcctcgatcatgtgcttaatcgtctgggactcgaccgcgacggcttcctcgacctcgaaggattcaccgtcggagctcttg  10956600                                                                                    <---------ANAC58                                                                                   --------->ATHB12                                                                                 <---------WOX13(1)                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)   <---------ARR11(3)                         <------ZmHOX2a(1)     --------->GLK1(2)          <-----   --------->ARR11(3)                     ---------->DOF2           <---------ARR14(2)         <----- -----ZmHOX2a(1) <---------ARR14(2)    <------ZmHOX2a(1)            --------->ARR14(2)         <----- ------TOE2(3)   --------->ARR14(2)   <----------ID1               <---------GLK1(2)<---------ANAC58<   aggatgatcatcttcttcgtttctgccatcgtttgcaacaaggacaaaggactagacaagttttgaagagaatcggctctgcgattgattgtgaattgtg  10956700                                                                                       <----------DOF2                                                                                      <---------ANAC58                                                                                      <---------ANAC46                                                                                   <---------WOX13(1)                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                       <------ZmHOX2a(2)                          <------------CBF                               <-----------TBP                                   --------->ATHB12                            ----------------->AGL3                            <-------GAMYB                         ------>NtERF2--------->ARR11(3)                     <---------DEAR3(2)                         <---------ZAT18                               ---------->DOF2<---------ANAC58                         --------->ZAT18                              <---------AHL20(2)     --------                      <------MYB46(1) <---------AGP1            ----------->GT1<---------MYB52(1)                      <------MYB83    <---------ARR11(3)     <---------ANAC58<------MYB46(1) --------    *TSS             --------->ALFIN1 --------->AGP1         <---------ANAC58<------MYB83   <-------- ----ANAC58          --------->MYB111(1)                 <---------ANAC58    <---------MYB46(3) ----ANAC58   <---------HSFB2a(2)<---------AHL20(2)    <---------ARR11(3)   <---------DEAR3(1) ----ANAC46--------->ALFIN1 <-----------------AGL3------------>CBF    --------->AHL20(2)   <---------TOE2(3) ---------AtMYB61    --------->MYB111(2)------>ZmHOX2a(2)<---------ANAC58   <---------DREB2C(2)   tgatggtctcaaggtttgggaagttggtgccctatttatagatctatgtaaaaacaatttcttacttggtaattaaagtcggttgattgcttttatgtta  10956800                                                                        <---------AHL20(1)                                                                        <---------AHL20(2)                  <------ZmHOX2a(1)                                   <---------YAB1             -------->HAHB4                                        <---------YAB1              <-----             --------->YAB1                                       <----------DOF2              ------            <---------YAB1                                     <---------ARR11(3)              ------      <----------DOF2------------------------>ANAC81           --------->ARR11(3)    ---------->DOF2 ->YAB1 --------->AHL20(2)                                     --------->GLK1(2) <----------DOF2    < ->TOE2(3)--------->YAB1        ----------->GT1       --------->ANAC55(2)  <---------AHL20(2)  <----- -YAB1------>ZmHOX2a(1)     ---------->DOF2           <---------ANAC55(2)<---------YAB1  ----------->GT1   atctaatccttttaataataggaaaacaataaaagggaaacaaatattggaattttaagtaacaaaatctttattatttttttcttttaaagagaaatat  10956900                                                       --------->GLK1(2)                                                       ------->TEIL                                                       --------->ARR14(2)                                                       <---------ARR14(2)                                                       <-----------ARR10                                                       <---------ARR11(1)                                                      <---------ARR14(1)                                                    --------->ANAC46                                                 -------->P                                             <---------ARR14(2)          ---------->DOF2                    <-----------ARR10        <---------HSFB2a(2)        <-----------GT1  --------->ANAC55(2)        --------->HSFB2a(2)        <---------AHL20(2) <---------CCA1(2)                   <---------ANAC58   <----------DOF2              <---------ICU4   <-----------GT1                          <---------ANAC46   <---------DAG2              --------->ICU4--------->ARR14(2)                  --------->YAB1 ----AHL20(1)                --------->AHL20(2) <-----------GT1                 <---------ATHB12 --->ARR11(3)                --------->YAB1--------->LBD16                    --------->WOX13(1) --->AHL20(1)             --------->YAB1  --------->HSFB2a(2)               <---------MYB52(1) -----------GT1     --------->TOE1(3)     <---------HSFB2a(2)             <---------ZAT6  <---------ANAC55(2) ----ARR11(3)       --------->TOE2(3) <----------DOF2--------->LBD16      ----------->GT1 <---------ANAC58   ttttacttttccaaaagctcaaccttagtaataatatttactttccagatttacccgtatctgatttcagaaaatacagttaatcatctactacgtgtga  10957000                                                                       <---------AHL20(2)                                                                      <---------YAB1                                                                    <--------HAHB4                                                                    <---------AHL20(2)                                                                    -------->ATHB1                                                                    -------->HAHB4                                                                    <---------ICU4                                                                    --------->YAB1                                                       <---------GLK1(2)                                               <-------TEIL         --------->ATHB51                                              <-----------HVH21    <---------ATHB51                              ---------->DOF2------->MYC3          <---------YAB1      --------->WRKY38(1) --------->YAB1     <-------MYC2          --------->ICU4                   -   <---------ICU4       --------->AHL20(2)   ------->MYC2       --------->AHL20(1)                 <-   --------->ATHB12     <---------AHL20(2)   <-------MYC3       <---------AHL20(2)               ----   -------->ATHB1  <---------TOE1(2)      <---------ALFIN1      --------->AHL20(2)             <-----  <---------YAB1   <---------TOE2(2)   --------->AtMYB61   <---------YAB1              ----------->GT1   aaaaatcattgactagggtcttatgttttaataaaagtaaacctccacgttcacatagattatgaattaattattatttgtgtattttgtagtgaatatc  10957100                                                 --------->AHL20(2)                                                <---------YAB1                                              <---------ICU4                                              -------->ATHB1                                              --------->YAB1                                             --------->ICU4                                             <---------ATHB51                                             <---------AHL20(2)                                  <---------AHL20(2)                                 --------->AHL20(2)                                 <---------AHL20(2)                        <---------ALFIN1     --------->AHL20(2)                       -------->P<---------AHL20(1)                       ------>MYB83       <---------AHL20(1)                                      ---                       ------>MYB46(1)    --------->AHL20(1)                                     ----                     --------->AtMYB61    --------->AHL20(2)                                     <---                     ------->GAMYB--------->AHL20(2)                                           ------     ----------->GT1--------->MYB46(3) --------->YAB1<-----------GT1              --------->MYB52(1) -------->YAB1      <---------MYB52(2)<---------AHL20(2)                   --------->ANAC46   ------- --------ATHB12    --------->ANAC58  --------->AHL20(2)             <---------ANAC55(2)       <------ ----->WOX13(1)    --------->ANAC58  <---------AHL20(2)   ----------->GT1--------->ZAT6      <------- ----YAB1 --------->ICU4--------->ANAC46  <---------AHL20(2)        --------->ANAC46        ---------   aatgaaaatgtaaaaattggtaaccaacaccacaatttttttaataaattattatttactgggtaaaactacgttacactaaacaaactgaaattaacga  10957200  Previous    Next  AGI:  At2g25700.1    Description:  ASK3 (ARABIDOPSIS SKP1-LIKE 3); protein binding / ubiquitin-protein ligase. similar to ASK4 (ARABIDOPSIS SKP1-LIKE 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G20140.1); similar to unknown [Populus trichocarpa] (GB:ABK92824.1); contains InterPro domain SKP1 component, POZ; (InterPro:IPR016073); contains InterPro domain SKP1 component; (InterPro:IPR001232); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897); contains InterPro domain SKP1 component, dimerisation; (InterPro:IPR016072) Range:  from: 10955825    to: 10956704    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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