Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------AHL20(2)                                                     -----                        --------->AHL20(2)                                                      <----                        <---------AHL20(2)                                                  ---------                --------->ZAT6                                                              <--------               --------->ZAT18                      --------->AHL20(2)                      ---------               <---------ZAT18                   --------->AHL20(2)           <---------RAP2.6(2)             <---------ZAT14                    --------->AHL20(2)           --------->RAP2.6(3)-----             --------->ZAT18                <---------AHL20(2)          <---------YAB1     --------->AHL20(2)             <---------ZAT18                --------->AHL20(2)    <---------YAB1      --------->HSFB2a(2) --MYB46(3)  --------->ZAT14             ------->TEIL            <-----------GT1------>NtERF2   <----   tcaatgtaaaacttgtgcacactaaattaaatggaatagtatgcatttaaataaaaaaatcaagaattttcattcttatttcggccttctaaaattaatt  10917200                                                                <---------AHL20(2)                                                                --------->AHL20(2)                                                               --------->AHL20(2)                                                            <--------ATHB1                                                            --------->AHL20(2)                                                            --------->ATHB51                                                            <---------AHL20(2)                                                            <---------ICU4                                                         --------->YAB1                      <-------     --------->AHL20(2)                                <---------YAB1                --------->YAB1    <---------AHL20(2)                               -------->ATHB1         <---------AHL20(1) ----------->GT1                                    <---------AHL20(2)      <---------ICU4 <---------AHL20(2) ---->AHL20(2)                    <-------GAMYB--------->At5g28300          <---------ARR11(3)    --- -----AHL20(2)                   <---------MYB46(3) <---------ATHB51 --------->GLK1(2)     --------->AHL20(2) >AHL20(1)                      <---------TOE2(3)   --------->AHL20(2)      --------->ARR11(3)  <---- -AHL20(2)                      <---------AtMYB61   --------->ICU4   <---------ARR11(3)   --------->AHL20(2) >AHL20(2)                 <-----------RAV1(1)----------->GT1  <---------AHL20(2)    --------->AHL20(2) ---->AHL20(1)       --------->AHL20(2)      <---------ZAT6--------->ICU4   --------->AHL20(1)  ----- -----AHL20(1)       <---------AHL20(2)--------->ZAT6<---------ICU4  --------->ARR11(3)--------->ICU4   aattagttaaattagtttgtgattttattttgttgtggttgtcactagtggtaaattattaataatttaaaaatctaatattttcaataaaaattaatga  10917300                                                                                <---------AHL20(1)                                                                                --------->AHL20(1)                                                                                <---------ARR11(3)                                                                                --------->ARR11(3)                           <---------YAB1                                     --------->AHL20(1)            <---------AHL20(2)                                                <---------AHL20(1)    --------->AHL20(2)----------->GT1                              --------->ATHB12 --TOE2(3) --------->AHL20(2)                                     <---------AHL20(2) --->ZmHOX2a(2)  --------->AHL20(2)                    <---------ARR11(3)     --------->ARR11(3) -----ARR11(3)  --------->YAB1<---------YAB1           --------->ARR11(3)     <---------ARR11(3) ---->ARR11(3) --------->AHL20(2)                     <---------GLK1(1) ----------->GT1        ------   tctatttttaatattaaataaaaatagttaaaattatagaaatttagttcatattgatatctctctaattcatttggaaaaatatttttagcacagacaa  10917400                                                       --------->ZAT6                            <---                                                       <-----------GT1                           ----                                                   <---------AHL20(2)                          <-----                          <---------AHL20(2)       --------->AHL20(2)                    <-------GAMYB             <---------ICU4                     --------->AHL20(2)                     <---------ANAC46             <--------HAHB4               --------->YAB1                    ---------->DOF2  <-------             --------->ATHB12  <-----------GT1  <---------AHL20(2)    --------->ATHB51 <---------TOE1(3)      <---------ANAC58   --------->AHL20(2)  <---------ICU4          <---------YAB1    <---------TOE2(3)      <---------ANAC58   <---------AHL20(2) --------->ICU4           --------->ICU4   <---------At5g28300 ----->RAV1(1)           <---------AHL20(1) <---------YAB1         --------->YAB1    <-----------GT1-   cagtttatgcctgcatcattacaacaattttttttactattttctcataattttttaatactatttgagttataattgaaaagctaattacggttaagga  10917500                                                                                             <<<<<<<<                                                                                    <---------TOE2(3)         <---------DOF5.7(2)                                                        <---------TOE1(3)         --------->MYB52(1)                                                   ======================= ------At4g35610                     --------->YAB1                           --------------->AGL15 ----->At4g35610                     -------->HAHB4                           <---------------AGL15 -ZmHOX2a(1)    <---------AHL20(2)   --------->AHL20(2)       ------->MYC3   <-----------------AGL2 --TOE2(3)     --------->AHL20(2)   <---------YAB1            <-------MYC3   <-----------------AGL1 -------->At4g35610           ----------->GT1 <-----------HVH21             *TSS<----------DOF2   gcagctatagataacgaattaatagattagagaggttaattatagagtcgtcacatctctctcacatgcctctctaagttccctttagggttttcttctt  10917600                                           ------>ZmHOX2a(2)                                          --------->GLK1(1)                                   <------NtERF2                                  --------->ABI4(1)                                  <---------ATERF1(1)                                  ------>NtERF2                                 --------->RAP2.3(2)                                 --------->RAP2.6(2)                                 <---------ATERF1(2)                                 --------->DEAR3(1)                --------->ANAC55(2)                                 --------->ANAC46                  <---------ANAC55(2)                                 --------->RAP2.3(3)               <------MYB83                                --------->ERF1                     <------MYB46(1)                                --------->RAP2.3(1)               --------->MYB111(1)                                --------->ORA47(2)                --------->MYB59                                --------->DEAR4(2)             <---------GLK1(2)                                --------->ATERF1(1)        <-----------------AGL1 --------->ZAT14               <---------ATERF1(1)         <-----------------AG <---------ZAT14              ------->GAMYB================HOX2a_HOX2a               <----------DOF2 <TBF1                       --------->MYB46(3)     ------>ZmHOX2a(1)              <---------DAG2<--- ============================================================================MADS_MADS         ------   cactatagagactcatgctcttctcttcccaatcgccgcctctgatctctcttcctcgcttctcagattaggtattagacattcactctttcttacattg  10917700                                                          <---------CCA1(2)                                 --------->ATHB12       <---------ICU4                                <---------YAB1          --------->YAB1                              <---------CCA1(2)        <---------ATHB12   --------->TOE2(3)                            --------->YAB1           --------->YAB1      --------->YAB1       --------->YAB1      <-------TEIL             --------->AHL20(2)  <---------ATHB12           -- ------YAB1        <---------HSFC1(2)           <---------YAB1   --------->ZAT6                    -- ----->GT1         --------->HSFC1(2)           --------->ICU4<----------DOF2            --------->YAB1   ttataacattgatgaagtagaagcttagattcatatcattgccattggtcacgattaatcatctctttcactaaatcatcaattgtttcaatgagaacca  10917800                                     <---------ARR11(3)                                     --------->ARR11(3)   --------->At4g35610           <---------ANAC55(2)   --------->ZAT2                --------->ANAC55(2)   ----------->RAV1(2)         <-----------GT1------->TEIL         ---------->ID1   <---------At4g35610   <---------MYB46(3)  <---------CCA1(2) <----------DOF2        <----------DOF2 ------->YAB1   <---------ETT(2) --------->ANAC58        --------->ARR14(2)        ------>NtERF2 ------->MYB52(1)   <-------TEIL --------->ANAC58        <---------ARR14(2) <----------DOF2         <   ataacagctgaatcaatgtcgatacatttgttgttacgaaatcttttgaatcttcactgaatccgctttgtcatttttcttttgcagcctttgttttgtt  10917900                                                                                    <---------ZAT2                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                                                                    --------->ZAT2                                                                                 ------>ZmHOX2a(1)                                                           <---------YAB1        --------->LBD16                                                          --------->TOE2(3)    ----------->RAV1(2) --                                                        --------->AHL20(2)   <---------ALFIN1     <--  --------->ATHB12  --------->GLK1(2)               <---------WRKY38(1)    <---------ALFIN1      <--- ---------WOX13(1)--------->MYB46(3)              <-----------HVH21  <---------ALFIN1    --------->GLK1(1)   agattgatttgttatgtccaacaatctattgcctcagccttgtatgcaaatgggtcaattcattaatgtccctactcccactcctgagctgatttctaat  10918000                                                    <---------ARR14(3)                         --------->ZAT14            --------->ARR14(3)                     ------>MYB46(1)                <---------GLK1(2)                       ---------                     ------>MYB83                   <---------ARR11(3)           <------MYB83                  --------->MYB46(3)         <----------ARF1                 <---------MYB46(3)           <-----------HVH21    <---------CCA1(2) ----------->ARR10  <---------ANAC46     <------ZmHOX2a(2) <---------ARR14(2)  --------->GLK1(2)    <---------MYB46(3)    --------->ICU4   <------MYB46(1) --------->ARR14(2) --------->WOX13(1)   --------->ALFIN1       <-----------RAV1(1)   <---------TOE2(3) ------->LBD16   --------->ANAC58     <-----------RAV1(1)  --------->ANAC55(2)   <---------MYB46(3) -------HSFB2a(2)--------->ANAC58--------->ARR11(3) --------->ARR14(2)    <---------ZAT6<------ZmHOX2a(1) ------LBD16   --------->MYB46(3)<---------ARR11(3) --------->ARR11(3)    <-----------RAV1(1)   ccggaaatgagattgtcacaaccaatctgtagtcatatctctggtgggagacaagattttcatgtaatgttgcctagtgttgttggtttaggatcagtta  10918100  Previous    Next  AGI:  At2g25640.1    Description:  similar to transcription elongation factor-related [Arabidopsis thaliana] (TAIR:AT5G25520.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44119.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Spen paralogue and orthologue C-terminal (InterPro:IPR012921) Range:  from: 10917576    to: 10921047    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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