Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->ANAC58                                                                    --------->ANAC58                                                                    --------->ANAC46                                                               <----------ID1                                                             <------ZmHOX2a(1)                                                        <----------DOF2                           ---                                                     --------------->AGL15                        <--                              <-------TEIL           <---------------AGL15                        <--  <---------GLK1(2)         <---------ARR14(2)      <-----------------AG                <---------ZAT14 -------->AHL20(2) <------ZmHOX2a(1)                <-----------------AGL1  <------ZmHOX2a(1)     <--   aaaaaattctccaaacatataggacatgtcgattcgtcttctacttcttgagtttcttctttaggaagacaagaaacaggaatcactgagaacacttctt  10892000                         --------->MYB46(3)                ------->GAMYB              --------->MYB52(1)           --------->DOF5.7(2)             ------>MYB46(1)                                         <-          --------->TOE2(3) --------->MYB46(3)                    <---------ATHB12           --------  ---------->DOF2 ------->TEIL             ------>MYB83         ----------->GT1    <---------AHL20(2) -------->GT1<---------DOF5.7(2)        --------->ANAC58    <---------WRKY18(1)   --------->AHL20(1) -------ANAC58 <---------MYB52(2)       --------->ANAC58   ----------->HVH21      <---------ARR11(3)< -------ANAC46 --------->MYB46(3) --------->HSFB2a(2)    <---------ANAC58         <---------AHL20(1)- -------ANAC58<---------TOE2(3)   <---------HSFB2a(2)    <---------ANAC58--------->TOE2(3)   --------   gcgttaaaacgacgttaacgaacatgaacaaccgttgtagaaacccaacgcttaaactcgcttgaccagtgattacctcagcgatatatttggacaagga  10892100 <------ZmHOX2a(2) -----ZmHOX2a(1)                                                                   --------->ALFIN1 ->ANAC58                  ---------->DOF2<---------ANAC46               --------->ARR14(2)        -- ---------ARR11(3)     --------->At4g35610----------->GT1                <---------ARR14(2) <------ZmHOX2a(1) -------->ARR11(3)  ---------->DOF2  --------->MYB52(1)             --------->MYB52(1)    --------->ALFIN1 ->ANAC58      --------->GLK1(2)--------->CCA1(2)                <-------TEIL    --------->CCA1(2)<--   aggatcatggagacgagaatcaagaagcggaaagagatgaaacggagtgaatttgtagtttaagagattcaaacggatttgagagatggggagaggaggt  10892200                                                 --------->ARR11(3)                                                 <---------ARR11(3)          <---------------AGL15                 <---------CCA1(2)          <---------TOE2(3)         ----------------->AGL3               <---------ANAC55(2)         --------->YAB1       --------->ANAC46                       --------->ANAC55(2)       <---------WOX13(1)  --------->ARR14(2)                        --------->YAB1        <---------ANAC46 ---->ZmHOX2a(1)                           <---------ATHB12      <---------LBD16 -------LBD16  ---------->DOF2           --------->WOX13(1)    ----------->HVH21   cctggatacaatccattaaaagtgatacttccattggatttgtcaatcacatatctcttgaattgttgacggagattgatgatgcaaacagtgttgttta  10892300                                       <---------ZAT6                             <-----------ARR10                             --------->ARR14(3)                             <---------ARR14(3)                             --------->ARR11(3)                             --------->ARR14(2)        --------->ARR14(2)            --------->At4g35610                             <---------ARR14(2)        <---------ARR11(3)            <---------At4g35610                             <---------ARR11(3)        --------->ARR11(3)    ------->GAMYB ----------      --------->At5g28300   --------->RVE1(1)          <---------ARR14(2)   --------->MYB46(3)     ----------->GT1 <---------WRKY18(1)              <---------CCA1(2)     <---------MYB52(2)   ggctcaagggtaaatatgtggtttgactgaatatcttcgtagtgatagcgaatttcatatctccagtctccattctcaacaaacttaagcagacacaata  10892400                                                     <---------AHL20(2)                    <---------At4g35610             --------->AHL20(2)                    --------->At4g35610  <-------GAMYB             --------->ARR11(3)         <---------MYB46(3)           --------->MYB52(2)           --------->MYB52(2)               --------->YAB1         <---------MYB52(1)   --------->CCA1(2)    <---------YAB1   ------------>CBF<----------DOF2 -->CBF --------->TOE2(3)    <----------ID1  <---------TOE2(3)  <---------ZAT18 <-----------GT1   agagagaaatcgttagatgttgagatgagaagagacaagtgtttgttgatgttattatataagttttgcgctcaatagtaagtttccttttttgtttttg  10892500                                         <---------CCA1(2)                    <---------YAB1    --------->TOE2(3)                <---------DAG2      <---------TOE1(3)                <----------DOF2     <---------TOE2(3)                           <----------DOF2 -----            <-----------GT1        <---------DOF5.7(2)                     <----------DOF2>>>>>>>>>WRKY18         <---------ICU4          --------->DOF5.7(2)               <---------MYB46(3)<----------DOF2   <---------At4g35610         <---------YAB1             <----------DOF2  ------>ZmHOX2a(1)    <----   gtttcatctacttatttcctttttcatagacttatgttaacgtttatctcttgctatttccttttttgtttgttatcctttccttttctttttgacagaa  10892600            <---------MYB52(1)           <-------GAMYB   <----------DOF2          <-----------RAV1(1)                                              <---------AHL20(2)  <---------MYB52(1)      <---------DAG2                      <------------CBF          ---------->DOF2 ---->GLK1(1)          <-----------GT1                   <------------CBF --------->AHL20(2) -----GLK1(1)   <-----------GT1                         <---------MYB46(3)<---------AHL20(2)   ctctgttttttgctgttgtttctatttgccttttctaattcgaactagtcgatttcggtgattgtattgactgtgatttatttgaagaggcaaagaaaca  10892700                                                      --------->ATHB12                                                      --------->ATHB51                                                     <---------AHL20(2)                                                     <---------YAB1                                                 --------->YAB1                                                <------ZmHOX2a(2)                                     <---------MYB52(1)         ------>MYB46(1)                            <---------ANAC46    ===================================HOX2a_HOX2a                            <---------ANAC58   <---------ARR11(3)                            <---------ANAC58   --------->ARR11(3)                     --------->AHL20(2)     <----------DOF2      <-----------GT1     --------->YAB1    ------>MYB83------>ZmHOX2a(1)   acaagagccttaagtacaatgcctagttttacttgtaccggttttcaaggatcatattattggacctacagataattcctacagacaatttcataggtga  10892800                                                                      <----------DOF2                                                                   --------->ARR11(3)                                                                   <---------ARR11(3)                                                                  <---------GLK1(1)               ---                                                                  --------->GLK1(1)               ---                                                                  <---------CCA1(1)            <-----                    <---------AHL20(2)                            <---------RVE1(1)        --------->AHL20(2)                  <---------YAB1                                  --------->RVE1(1)        <---------AHL20(2)         <-----------GT1                      <----------DOF2     --------->CCA1(1)       <---------AHL20(1)         >>>>>>>>>WRKY18                  ------->TEIL           <---------ARR11(3)       --------->AHL20(2)        ----------->HVH21             --------------->AtSPL8     --------->ARR11(3)       <---------AHL20(2)   ttcttcggttttgacagtttattattttgaaaactgaacatatgtactctttatttttctgtagatagatatctttctcacgagtacaacaattttttta  10892900  Previous    Next  AGI:  At2g25565.1    Description:  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G24480.1) Range:  from: 10891140    to: 10892373    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g25570.1    Description:  binding. similar to Os02g0202600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046232.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65643.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like (InterPro:IPR006597) Range:  from: 10892776    to: 10894999    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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