Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -              <----------DOF2   ---------->DOF2                     --------->ANAC46                -             <---------DAG2   <------NtERF2                 <-------GAMYB                          --          <-----------GT1 <---------At4g35610              <---------MYB46(3)                      <-       <---------ARR14(2) --------->ZAT2                   <---------DEAR3(2)                   -----       --------->ARR14(2) --------->At4g35610          ----------->HVH21------>NtERF2           <---- --------->DOF2           <---------ZAT2  ---------->DOF2 <---------DEAR3(1)          ------>ZmHOX2a(1)   ttaaaagcatatttgcctttttcttctaagctggcaaagagaatgaaagaccaatttccgacggttgaatatgccaccttcttcgttcctctctggtcct  10821100            ----------->GT1                                 <---------------AGL15        <---------ARR11(3)                          --------->YAB1        --------->ARR11(3)                          <---------ICU4       --------->GLK1(1)                            <--------HAHB4     --------->LBD16                               --------->ICU4    --------->ANAC46                             --------->YAB1 <---------ARR14(2)                            --------->AHL20(2) --------->ARR14(2)                            --------->AHL20(1) ---------GLK1(1)                              <---------AHL20(1) -------->CCA1(2)                             --------->YAB1--------------->AGL15 -------->GLK1(1)                        --------->YAB1   <---------At4g35610              <--------- ------->ARR11(3)              ------>ZmHOX2a(2)<---------AHL20(2)                    <---------AHL20(1) --------ARR11(3)            <---------ARR11(3)<---------AHL20(2)       ----------->GT1  <---------AHL20(2) ->ZmHOX2a(1)              <---------YAB1--------->TOE2(3)--------->At4g35610         <---------ARR11(3) -----HSFB2a(2)    <---------YAB1   <---------YAB1 <---------YAB1     ---------->DOF2 --------->AHL20(1)   agatatccgaaatcttgtaatttgatagcatgatcgttttcattcttaatataatcattttgctgaaaacagaaaagaaaaaatccaatatataaacact  10821200                                                                     <<<<<<<<<WRKY18                                                         --------->YAB1                                                        ----------->TBP             --------->LBD16                         <---------AHL20(2)                          <---            <---------ANAC46                   <---------At4g35610  ------------>CBF            -----            <------NtERF2                     ------->TEIL<---------AHL20(2)                    <----            <---------LBD16         ---------->DOF2 --------->AHL20(2)                         <----- --GT1     <---------LBD16   --------->YAB1--------->AtLEC2        <-----------HVH21       <---------   tccatatagaagtcgcgggatgggagattaatgagaagaaaagacatgcagctattttataaaaatgctcgtcaatgcattatggtgatgaaataacatc  10821300                                                                                                -----                                                                                                -----                                                                                         --------->TOE1(3)                                                                                   <---------MYB59        <---------HSFB2a(2)                                                     <---------WRKY18(1) ---------CBF         --------->YAB1                                           --------->WRKY12 <---- ---->ATHB12          --------->TOE2(3)                       <-----------TBP<----------DOF2   ------ -----ICU4         --------->YAB1--------->AHL20(2) <------------CBF    <---------WOX13(1)     ------ ----YAB1     --------->AHL20(2) <---------AHL20(2)--------->ATHB12    <------------CBF  --------->TOE2(3) --GT1  --------->HSFB2a(2)  <---------YAB1       <---------YAB1----------->TBP--------->WRKY38(1)---   attgggttttctataagttaataatcttattctcattaattagtcaaaatatacgattggaggtttatatatagattgactttgacctaaaccatagccg  10821400                                                       ----------->GT1          <<<<<<<<<<<<<<<<<LFY                         --------->YAB1  ----------->GT1                                   <--------ATHB1 ---->At5g28300                                     --------->YAB1 ---->LBD16------------>CBF  --------->ZAT18       <---------ATHB51                              ---- -----RAP2.6(3)              ------------>CBF      <---------ATHB12       --------->SPL7         ---- --->RAP2.6(2)               <---------ZAT18       --------->ICU4        --------->ALFIN1        <--- ----->GT1--------->YAB1<----------DOF2        ------------>CBF    <------ZmHOX2a(1)            ----- ------->DOF2         <---------YAB1          ------------------------>ANAC81          <---------MYB52(1)   taaatcggaaaatgacaatggtttatctttgtgcaatactagttcaaaatgcaataatagtaaaaaataggaaacgtagggccttctccattagtgtata  10821500                           <----------DOF2                        <---------ARR11(3)                        --------->ARR11(3)                       <---------CCA1(2)                      --------->ARR11(3)                      <---------AHL20(2)                 --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ICU4    --------->AHL20(1)                                          --------->At4g35610 ----->DAG2   <----------DOF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1) ----------->AtSPL8   <---------ARR11(3)          --------->TOE2(3)     --------->TOE2(3)       <---- ------------AtSPL8   <---------AHL20(1)    <---------ICU4            ------>ZmHOX2a(1) ------>ZmHOX2a(1) ----->DOF2   <---------DAG2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>ZmHOX2a(1)<---------At4g35610   aagtactcatttctaactttttaatatatctttgtgccaaaccacattatgacctcaaaactacttcctctcctcctcaatctcatcttcctcttcttct  10821600                                                                                                   --                                                                                                   --                                                                                                   <x                                                                                                 ----                                                                                               xxxxxx                                                                  <---------ANAC46            <xxxxxx                                                                  <---------ANAC58            <------                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <-------GAMYB <----------DOF2   <xxxxxx              xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)---             --------->ARR14(2)                              <---------MYB46(3)             <xxxxxxxx             ------->TEIL                                    <---------DEAR3(1)             ------>ZmHOX2a(1)          --------->ANAC58                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----          --------->ANAC58                          <xxxxxxxxxxxxxxxxsmallRNA(i)            <xxxxxxxx          --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ANAC58         <xxxxxxxxx ------DOF2  <---------ARR14(2)      <---------GLK1(2)  <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ARR14(2)   ttccccttctaaacgcatccgaacaaaaaccttgctacagtttctcatgtagtcaagagagcgtcgttgctcgtttccctttctccctattctcctatca  10821700                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       --------->ICU4                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     ---------->DOF2                 ================================                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->ARR14(2)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                            <--            <---------ARR14(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                          <---   <-----------HVH21 --------->ARR14(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       ----- ------->TOE2(3)    <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   <xxxxxxxx ------->TOE2(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <-------- ---->P <---------LBD16  <-----------GT1--------->YAB1   --------->TOE1(3)            --------------- xxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)---------->DOF2       <----------DOF2---- xxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxx>smallRNA(fl3)    ------>ZmHOX2a(1)<-------------- ---ATHB12<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->TOE2(3)--------------->AtSPL8xxxxx xxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->RAV1(2)<---------LBD16 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->TOE2(3)<---------ANAC58 xxxxxxxxxxxxxsmallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)XXXXXXXXXXXXXXXXXXXXX>MIR864-3P ------->TEIL  <-------- xxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxx>smallRNA(i)<------ZmHOX2a(1) xxxxxxxxxxxxxxsmallRNA(i2) --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ANAC58   acctgagtcatgcggctactcaggattcaacctcatatgcaaagatgatgccaatactaccttaaagcttcctaagtctgaaccctttcttgttaaggag  10821800                                                                                  ------>ZmHOX2a(2)                                                                                 --------->GLK1(1)                                                                                 <---------GLK1(1)                                                                                --------->ARR14(3)                             --------->MYB46(3)                                 <---------ARR14(2)     <---------YAB1         <xxxxxxxxxxxxxxxxsmallRNA(i)                        <-----------ARR10  <xxxxxxxxxxxxxxxxsmallRNA(i)------->GAMYB                                     <---------ARR14(3) ====HOX2a_HOX2a       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     <---------ARR11(3) ----ZmHOX2a(2)      xxxxxxxxxxxxxxxx>smallRNA(i)                               --------->ARR14(2) ------ARR14(2)      <xxxxxxxxxxxxxxxxsmallRNA(i)                   --------->WRKY45 ---->GLK1(1)     <---------ARR14(2)     xxxxxxxxxxxxxxxx>smallRNA(i)           --------->ARR11(3) xxxxxxxxxxxxxxxsmallRNA(fl3)<---------MYB52(2)                   <----------DOF2<------ZmHOX2a(2) -TOE1(3)         --------->ARR14(2)   xxxxxxxxxxxxxxxx>smallRNA(i) --------->WRKY12  <---------DAG2 >AGL15        xxxxxxxxxxxxxxxx>smallRNA(i)                      xxxxxxxxxxxxxxxx>smallRNA(i) ----->ARR14(2)<---------ANAC46        <xxxxxxxxxxxxxxxxsmallRNA(i) --------->WRKY38(1)     <-------- -AGL15      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxsmallRNA(i)  <----------DOF2 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->LBD16<-----------RAV1(2)          <------ZmHOX2a(1) -TOE2(3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------GLK1(2)   atcgactatgaaacacagcgtattcgcctcaacgaccctgagaattgtttggccagacgacttcttaactttgacccttcaggatctcctttttcttttc  10821900                                                                    --------->ATHB12                         =============HOX2a_HOX2a          xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         ------>ZmHOX2a(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         =================HOX2a_HOX2a    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       <---------ARR11(3)               ------>ZmHOX2a(1)                       <---------AGP1                   xxxxxxxxxxxxxxxx>smallRNA(i)                ------->MYC3              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <-------MYC2              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <                ------->MYC2       <------ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     ------                <-------MYC3     <---------TOE2(3)      <-----------HVH21 <---------ANAC58   xxxxxxxx               --------->ANAC46  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <---------ANAC58  ------>ZmHOX2a(1)     --------->ANAC55(2)<---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     xxxxxxxxxxxxxxxxxx <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <-----------GT1 <-- --DOF2      <---------ALFIN1  ------>ZmHOX2a(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   xxxxxxxxxx   ttcgctctcgtaactacacgttcttgatctgtcctaaggaagcgaacatcactgcatccttcagagctatcgattgccttggtaataccacttcctcctt  10822000  Previous    Next  AGI:  At2g25410.1    Description:  protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G46495.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39757.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 10821549    to: 10823073    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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