Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ----------->GT1     <---------YAB1  --------->ICU4              <---------ALFIN1 -------->RAV1(1)            --------->At4g35610                  <---------ZAT6 ---->ZAT2                   <---------At4g35610                ----------->GT1                  ---- ---->At4g35610            --------->YAB1          --------->MYB52(1)                      --------->GLK1(2) --->ANAC46              --------->GLK1(2)         ----------->RAV1(1)                 --------->YAB1 --->AGL2            --------->YAB1   ---------->DOF2 ------->GAMYB              ------->TEIL--------   cagcattatgagataaaaacatatcagaatcagcaccttcaaaagtctgaaaacaacagcatgttatagtgaaaacacatttgcacctaaaataatctaa  10820500                        --------->MYB52(1)                         <---------AHL20(2)     --------->ARR11(3)                     --------->ANAC46                              --------->AHL20(2)     <---------AHL20(2)                    <---------HSFB2a(2)                            <---------AHL20(1)     <---------ARR11(3)                    --------->HSFB2a(2)                           --------->AHL20(2)      --------->AHL20(2)                    <------NtERF2      --------->RAP2.6(3)   --------->TOE2(3)     ------>ZmHOX2a(2)      <---------ICU4--------->LBD16   <---------ICU4         --------->YAB1 --------->ATHB12   --------->YAB1 <---------LBD16     --------->ATHB12    <-----------GT1  <---------YAB1 --------->AHL20(1) ----->YAB1       --------->ZAT18  <---------AtLEC2    <----------DOF2     --------->ICU4 <---------AHL20(1) ->TOE2(3) <---------ANAC55(2)<---------MYB46(3)      <---------ICU4    <---------YAB1   --------->AHL20(2)   aataagcataatcacctaagtccgcgaaacggttgatgcatgatggccttagttaatctttaaccatattaaatttgattattgatctaaaatatattga  10820600                  <---------AHL20(2)                <---------RVE1(1)               <---------GLK1(2)               --------->ARR11(3)                           <---------AHL20(2)  <---------AHL20(2)                                    --------->AHL20(1)  --------->AHL20(1)                     <---------YAB1 --------->AHL20(2)                   <------ZmHOX2a(1)  <---------AHL20(1)                    <-----------GT1 <---------AHL20(1)                 <---------TOE1(3)  --------->AHL20(2)               --------->AHL20(2)   <---------AHL20(2)                 <---------TOE2(3) --------->AHL20(2)                <---------AHL20(2)  --------->AHL20(2)          --------->YAB1 <---------AHL20(2)             --------->YAB1  <---------AtLEC2  ------->TEIL    <---------YAB1   --   caaataaattgttttcagattttttttttgacatttataaattttcattttcatgaaataaatttatgaaccaaaacatatgttatgacaattaaggaag  10820700                                                                                                   <-                                                                                                   --                                                                                                   <-                --------->YAB1                                                                     --               <---------ATHB12                                                                 <----              ------>MYB46(1)                                                                   -----            <---------MYB59                                                                    ------            <---------MYB46(2)                                                              <--------      <---------ICU4                                                                      --------->ATHB12     <---------YAB1                               --------->YAB1                         ============  ------>MYB83------>MYB83                      ------>MYB83                             <---------YAB1  ------>MYB46(1)                               ------>MYB46(1)                          ============ ----------->RAV1(1)                          <---------MYB59                          ------>ZmHOX2a(2) ------->MYB46(3)    ------->TEIL             <---------MYB46(2)          ----------->GT1------>ZmHOX2a(1)   aaccaacatcattaccaaacatgaacttcaaaaatcccaataccaataccaaacataactccaaaacatttgagcctagtaacttctgatcctgattgca  10820800                <---------ARR14(3)                --------->ARR14(3)                <---------ARR14(2)                --------->ARR11(3)                <---------ARR11(3)                --------->ARR14(2)                --------->AGP1                <---------AGP1         <---------AHL20(1)         <---------ARR11(3)         --------->AHL20(1) --------ARR11(3) ------->ARR11(3) --------AHL20(1)                                                             --------->AHL20(2) ------->AHL20(1)                                                            <---------ATHB12 -----------AGL15     ---------->DOF2                                      --------->WOX13(1) ---------->AGL15 ------>ZmHOX2a(2)                                      <------ZmHOX2a(2) ----------->AGL2<------ZmHOX2a(2)                              <---------AHL20(2) -WOX13(1)--------->CCA1(2)                                    --------->AHL20(1)           <-------- ========================HOX2a_HOX2a                  ------->TEIL       ------------>CBF  ---------- =======================HOX2a_HOX2a       --------->MYB52(1)   <---------AHL20(1)  --------->AHL20(1)   atatatagcaatatataagatcttgaaaggaagttaatgtcaaataacagaaaatgaacttcatatatattttagatcaatgaaatatatgactaaagtt  10820900                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxx>smallRNA(le3)                  *TSS                                            <---------PCF2                 --------->ANAC58                         xxxxxxxxxxxxxxxx>smallRNA(s)                 --------->ANAC58                      --------->ANAC58 <---------ARR14(2)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ANAC58 --------->ARR14(2)              --------->MYB46(3)                       xxxxxxxxxxxxxxxx>smallRNA(s)             --------->ANAC58                        xxxxxxxxxxxxxxxx>smallRNA(s)             --------->ANAC58              <---------WRKY18(1) <---------ANAC46             --------->ANAC46            <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(s)   <---------At4g35610                  <-------GAMYBxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->At4g35610             --------->DAG2   <---------ATHB12xxxxxxxxxxxxxxxx>smallRNA(s) -TOE2(3)  ---------->DOF2       xxxxxxxxxxxxxxxxx>smallRNA(se3) <---------DEAR3(2)     <---------ANAC46 >DOF2  <----------ID1     --------->MYB52(1)   xxxxxxxxxxxxxxxx>smallRNA(s)     <---------ANAC46   -   tgttcagataacaacaagcacccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgaatcccactgggtgtgatttgtattt  10821000                                                                                                    -                                                                                                    -              <----------DOF2   ---------->DOF2                     --------->ANAC46                <             <---------DAG2   <------NtERF2                 <-------GAMYB                          --          <-----------GT1 --------->ZAT2                   <---------MYB46(3)                      <-       --------->ARR14(2) <---------At4g35610              <---------DEAR3(2)                   -----       <---------ARR14(2) <---------ZAT2  ---------->DOF2 <---------DEAR3(1)                    <---- --------->DOF2           --------->At4g35610          ----------->HVH21------>NtERF2 ------>ZmHOX2a(1)   ttaaaagcatatttgcctttttcttctaagctggcaaagagaatgaaagaccaatttccgacggttgaatatgccaccttcttcgttcctctctggtcct  10821100            ----------->GT1                                 <---------------AGL15        <---------ARR11(3)                          --------->YAB1        --------->ARR11(3)                          <---------ICU4       --------->GLK1(1)                            <--------HAHB4     --------->LBD16                               --------->ICU4    --------->ANAC46                             --------->YAB1 <---------ARR14(2)                            <---------AHL20(2) --------->ARR14(2)                            --------->AHL20(1) -------->GLK1(1)                              --------->AHL20(2) -------->CCA1(2)                             --------->YAB1--------------->AGL15 ---------GLK1(1)                        --------->YAB1   <---------At4g35610              <--------- ------->ARR11(3)              ------>ZmHOX2a(2)<---------AHL20(2)                    <---------ARR11(3) --------ARR11(3)            <---------ARR11(3)<---------AHL20(1)       ----------->GT1  <---------AHL20(2) ->ZmHOX2a(1)              <---------YAB1--------->TOE2(3)--------->At4g35610         --------->AHL20(1) -----HSFB2a(2)    <---------YAB1   <---------YAB1 <---------YAB1     ---------->DOF2 <---------AHL20(1)   agatatccgaaatcttgtaatttgatagcatgatcgttttcattcttaatataatcattttgctgaaaacagaaaagaaaaaatccaatatataaacact  10821200                                                                     <<<<<<<<<WRKY18                                                         --------->YAB1                                                        ----------->TBP             --------->LBD16                         <---------AHL20(2)                          <---            <------NtERF2                      <---------At4g35610  ------------>CBF            -----            <---------LBD16                   ------->TEIL<---------AHL20(2)                    <----            <---------ANAC46        ---------->DOF2 --------->AHL20(2)                         <----- --GT1     <---------LBD16   --------->YAB1--------->AtLEC2        <-----------HVH21       <---------   tccatatagaagtcgcgggatgggagattaatgagaagaaaagacatgcagctattttataaaaatgctcgtcaatgcattatggtgatgaaataacatc  10821300                                                                                                <----                                                                                                -----                                                                                         --------->TOE2(3)                                                                                   <---------MYB59        <---------HSFB2a(2)                                                     <---------WRKY18(1) ---------CBF         --------->TOE2(3)                                        --------->WRKY12 ----- ---->ATHB12          --------->YAB1                          <-----------TBP<----------DOF2   ------ -----ICU4         --------->YAB1<---------AHL20(2) <------------CBF    <---------WOX13(1)     ------ ----YAB1     --------->AHL20(2) --------->AHL20(2)--------->ATHB12    <------------CBF  --------->TOE1(3) --GT1  --------->HSFB2a(2)  <---------YAB1       <---------YAB1----------->TBP--------->WRKY38(1)---   attgggttttctataagttaataatcttattctcattaattagtcaaaatatacgattggaggtttatatatagattgactttgacctaaaccatagccg  10821400  Previous    Next  AGI:  At2g25400.1    Description:  pre-tRNA. tRNA-Arg (anticodon: TCT) Range:  from: 10820918    to: 10820990    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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