Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <-----------GT1           <---------AHL20(2)                                                                       x   ---------->DOF2                                                                                 <- <---------AHL20(2)                                                                               <-- ------->CCA1(2)                                                                <---------ANAC46  --- -------ARR11(3)         <----------DOF2 <---------YAB1                <---------ARR11(3)         <-- ------>ARR11(3)    --------->YAB1    <---------AHL20(2)               --------->ARR11(3)       <xxxx   gatttaaaagtatttacttaaatgatactttcatttttgttttatttttagtttttcatatgaatactcttgaaatcttgttgagtttatatcaattcta  10690800               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            ------->TEIL           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->YAB1       <---------ICU4       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------ATHB12      --------->ICU4     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <---------AHL20(2)   --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(2)      <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------AHL20(2)     --------->LBD16 --------AHL20(2)         <-----------RAV1(1)              <---------LBD16       <xxxxxxxxxxxxxxxxxxx -------AHL20(1)       <-----------RAV1(1)  --------->At4g35610    ----------->GT1 ------>AHL20(1)  --------->YAB1    <---------YAB1      ---------->DOF2       --------->YAB1       <x -------ARR11(3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC55(2)      <---------YAB1       <xx xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->YAB1      <-----   tatatttaatcatgagcctataacaatgttgttggagtattatatcagaagaatacataaaaccggaaatagtttatttataatcaagttagacaatttt  10690900                                                                                     <---------------AtSPL8                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                                  <---------AGP1                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                <------ZmHOX2a(2)                                                 --------->AGP1        --------->ANAC58                                                          <---------ARR11(3)        --------->ANAC46                                                          <---------ARR11(1)        --------->ANAC58      <---------YAB1                                      --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              --------->YAB1<---------CCA1(2) xxxsmallRNA(se3)        --------------->AGL15             <----------DOF2       <---------ARR14(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          ---------->DOF2    <----------DOF2 --------->LBD16 xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         >>>>>>>>>>MYB80  <---------DAG2     <---------LBD16 ------GT1     <---------ARR11(3)<---------YAB1       <-----------GT1         ----------------->AGL1   caattcattcaagacacgatcatttttctaatattatgaattcaaaccaaagtgattcacacttttctttcacaatttatgccggatctagtacccataa  10691000                                                                         --------->ATHB12                                                         <---------YAB1 <---------YAB1            ---    ----------->GT1             ---------->DOF2         <---------AHL20(2)                 ----------   --------->DAG2     ----------->GT1  ----------->RAV1(1)            <----------DOF2 --------->AtLEC2  ---------->DOF2 ---------->DOF2     <----------ID1    --------->AHL20(2)>>>>>>>>>ARR2   -------->P   aacataaagttaaatcaaactaaagtgtgaattcaaaagaacaacaaaaaaaaaccattaaaattagtttagctttgattgtgcctcaatgcaacctgat  10691100                                            <---------ARR11(3)                                            --------->ARR11(3)                                   ----------->GT1                                  ------->MYC3                                  <-------MYC3                                  <-------MYC4                                  <-------MYC2                                  ------->MYC4                                  ------->MYC2                                 <---------TGA1a                                 --------->TGA1a                                 --------->ANAC55(2)                   <---------ANAC58                                 <---------O2                          <---------ANAC46                          <---------ICU4   --------->RVE1(1)           <---------ANAC58            --------->ANAC58     <---------ANAC55(2)                --------->TOE2(2)            --------->ANAC46     <--------ABF1                     ----------->RAV1(2)     --------->YAB1    --------->YAB1      --------->CCA1(1)       <---------At4g35610    <------ZmHOX2a(1) ------>ANAC46   --------->bZIP60(2)   --------->AHL20(2)        <---------ALFIN1       <---------TOE2(3) ->RAV1(2)  --------->ANAC58     --------->O2<---------YAB1     <-------TEIL    --------->TOE2(3)   acaccactgataagacgacatgtcatcaaaatgacacgtgttaaaatatcattcgctatctaaacgtacacctgcgtgtcaacataaactgaggaagtta  10691200                          <---------ARR14(2)                          --------->ARR14(2)               <---------ZAT18               --------->ZAT14               <---------ZAT14                                                         <---------At5g28300              *TSS--------->ANAC58               <------ZmHOX2a(1)                 --------->WOX13(1)           --------->ZAT6 <---------ARR11(3) =============HOX2a_HOX2a           -------->P     <-----         <-----------GT1  --------->ARR11(3) <------ZmHOX2a(1)               --------->At4g35610-----   <----------DOF2--------->ANAC46        ------->PIF5                       <---------At4g35610-----   <---------DAG2 --------->ANAC58        <-------PIF5            --------->MYB52(1) <---------ATHB12 ------->TEIL--------->ANAC46      ---------->DOF2 <------ZmHOX2a(2)   <---------GLK1(2)      <------   atgaactttttttacactgcacgaagaagaccctctcaaaagcacgaggaaggatcaaatcggaaacttaacagaatttagctaccaattactgtctccg  10691300                                  <---------SPL7                                 <---------TGA1a                                 --------->TGA1a                              <---------DEAR3(1)                              --------->DEAR3(1)                             <------NtERF2                             --------->ATERF1(1)                           <---------bZIP60(2)                           <---------ANAC58                           <---------ANAC58                           <---------bZIP60(1)                           <---------ANAC46                                      <---------ICU4    ------>ZmHOX2a(2)     <------NtERF2                                          --------->YAB1    ====================HOX2a_HOX2a                                           <---------ICU4   =====================HOX2a_HOX2a    --------->ANAC46                    --------->YAB1   <------ZmHOX2a(2)      --------->ATERF1(1)    --------->ANAC58         <---------YAB1  --------->ARR14(3)     ------>NtERF2--------->LBD16     --------->HSFB2a(2) --------->YAB1  <---------ARR11(3)     <---------ATERF1(1)     --------->ANAC58       --------->YAB1  --------->ARR11(3)     --------->ABI4(2)  --------->REM1(1)     --------->ANAC58  --------->YAB1  <---------ARR14(3)    <---------DEAR3(1)  --------->MYB46(3)    --------->ANAC58  <---------ICU4 ----DEAR3(1)           --------->ALFIN1  ----------->RAV1(1)   ---------->DOF2 <---------YAB1 ->NtERF2         <---------REM1(2) <---------LBD16       <---------HSFB2a(2)<---------YAB1 ---->LBD16      ------>ZmHOX2a(1)<-----------HVH21<---------ARR11(3)  --------->ICU4           <---- ---LBD16      ------>ZmHOX2a(2) ==========================================bZIP_DOF<---------YAB1   gcgagatctcaatttgatccttcacggtggcgtcgacgtccgggcaacaacaagctctctcgagaagaaagccattatcatcatcatcatcatcttcatc  10691400                                                                            <---------ARR14(2)                                                                            --------->ARR14(2)                                                                        --------->At4g35610                                     ------>NtERF2           --------------->AGL15                                     <------NtERF2           <---------------AGL15                                    <---------RAP2.3(1)     ----------------->AGL1                                    ------>NtERF2           <-----------------AGL1                                    --------->LBD16         <-----------------AG                                   <---------DEAR3(1)       ----------------->AGL2                               ----------->RAV1(2)          <-----------------AGL2<----------DOF2                   ----------->RAV1(2)                      ----------------->AG----------->GT1                   <---------At4g35610<---------ANAC46--------->LBD16   --------->ZAT2                 <---------ALFIN1 <---------LBD16   <---------LBD16     <---------At4g35610      ------>ZmHOX2a(1)     <---------At4g35610   <---------ARR14(2)    <------NtERF2<-----------GT1   ------>ZmHOX2a(1)        <---------ZAT2  --------->MYB52(1)          <---------ZAT2         <----- -----ICU4      ------>ZmHOX2a(1)------>ZmHOX2a(1)--------->ARR14(2)   ----------->RAV1(1)   <-------   atctcctcctccgtcttcctcacctgttcgagctcctgcggcgaagaaaccgagtccggaatacccattttggcagcagaactggtttatcggtctgcta  10691500                                                                                    --------->At4g35610                                                                                    <---------At4g35610                                                                                 ------>NtERF2                                                                                 <---------ATERF1(1)                                                                                <---------ALFIN1                                                                                --------->ANAC46                                                                      --------->ANAC46                                                                      --------->TGA1a                                                                      ===============================                                                                      <---------O2 --------->RAP2.3(2)                                                                      --------->O2--------->RAP2.3(1)                                                                    <---------ALFIN1------>NtERF2                                                                 <---------ARR14(2)<---------DEAR3(1)                                                                 --------->ARR14(2)--------->DEAR3(1)                                                                <-----------HVH21--------->LBD16                                                        <---------YAB1<---------TGA1a                                                        ------>ZmHOX2a(1)       --------->DEAR3(1)                                                    <---------ARR14(2)--------->ANAC58              --------->ARR14(2)          --------->TOE2(3)    --------->LBD16 --------->ATERF1(1)        <----------DOF2              ===========================================bZIP_DOF        -----       <---------ANAC58   --------->ANAC58<---------MYB59     <---------ANAC46<---------ATERF1(1)       <---------ANAC58   --------->ANAC58--------->TOE2(2)  <---------LBD16  ------>NtERF2 <-------- -----DOF2    <---------GLK1(2)      <----------DOF2--------->ARR14(2)--------->ANAC55(1)   --------- --At4g35610 <------ZmHOX2a(1)      --------->TOE2(3)<------ZmHOX2a(2)--------->ANAC58 <---------At4g35610   ttcgtgatggctttaggattcttctgtctcgctatcttcctttacctaagtctcgatcctgattccggttacacgtctgcctccgccgctgcttctggta  10691600       <---------ANAC46      <------NtERF2                                                                 <---------ARR14(2)    --------->ALFIN1           <---------ANAC58                                     --------->ARR14(2) ======bZIP_DOF                <---------ANAC46                                <---------LBD16 ----->DOF2                    <---------ANAC58                               --------->ALFIN1 -HSFB2a(2)   --------->MYB52(2)   <---------YAB1                           --------->CCA1(2) >HSFB2a(2)  <-------TEIL --------->ATHB12                                 --------->ARR11(1)   aagaaggtgtcgaggttcgttttcgatttcattgcttatgattttcggtgaatgtcgatttgtttcaatttcccatagatttgggggatttgtattgaaa  10691700  Previous    Next  AGI:  At2g25110.1    Description:  SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR). Identical to Stromal cell-derived factor 2-like protein precursor [Arabidopsis Thaliana] (GB:Q93ZE8;GB:O81720;GB:Q9SEZ5); similar to unknown [Populus trichocarpa] (GB:ABK93345.1); contains InterPro domain MIR motif; (InterPro:IPR016093); contains InterPro domain MIR; (InterPro:IPR003608) Range:  from: 10691214    to: 10693164    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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