Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->YAB1                          <----------DOF2                      <-------TEIL  >>>>>>>>>TBF1               --------->LBD16                     --------->CCA1(2)           <<<<<<<ZML2    ------>NtERF2                      --                    --------->ARR14(2)       --------->TOE1(2)<---------LBD16                      <-                    <---------ARR14(2)     ------->TEIL       --------->RAP2.6(3)              ------ ---At4g35610      --------->At4g35610 >>>>>>>>>TBF1  <------ZmHOX2a(1)                        <-----   tctcactcaccaaaattgatcagatacaagtataagaagaagaagaacctagaacaggaccccttccggcttcatcgatacccattagacaaggttgaga  10688700                                                                                       <------MYB83                                                                                       <------MYB46(1)                                                                                  ------>MYB46(1)                                                                                  ------>MYB83                                                                                <---------------AGL15                                                                                <---------MYB46(2)                                                                                --------------->AGL15                                                                                <---------MYB59                                                                               ----------------->AGL3                                                                               <-----------------AG                                                                               ----------------->AGL2          <-----------HVH21                                                    ----------------->AGL1 --------------->AGL1   --------->GLK1(2)                 <---------TOE1(3)    --------->ANAC55(2) ----------------AGL1  <---------GLK1(2)            <-------TEIL               <-----------------AGL1 --->At4g35610        <---------At4g35610      --------->YAB1       --------->TOE2(3) --------->MYB59 ----At4g35610 <---------ATHB12               <-------TEIL<---------TOE2(3)    <-----------------AGL3   tgcccattctggtgtcaaacattcagattccattccttcaacaaaacattcatatacattagggttttagcctcaattctcacctaatttggtcacattg  10688800        <------MYB46(1)        <------MYB83       <---------AtMYB61       --------->MYB46(2)       --------->MYB59                                                                        <------ZmHOX2a(1)       --------->MYB111(1)                          --------->ANAC58                   --------->MYB52(1)      <--------P                 <----------DOF2    --------->ANAC58             --------->ANAC46  <---------ANAC46   ---------->DOF2              ---------->DOF2          <----------DOF2  <-------- <---------LBD16  --------->TOE2(3)            <---------YAB1--------->LBD16   <---------AtLEC2    --   agttctgggtaggtttcaaaacttaaagcattggacttttctattgaatatgaaaagctactccagataaactcgaactttacatgaaacaactgaggaa  10688900                                                                <------ZmHOX2a(1)                ----      --------->ATHB51                                     --------->ATHB12                      ----      <---------AHL20(2)       ----------->GT1            <---------YAB1                       <----- -TOE2(3)    <---------At4g35610       <-----------GT1----------->RAV1(1)          --------->GLK1(1) --------->GT1    --------->ALFIN1<---------AHL20(2) ----------->HVH21  ------->TEIL <---------ATHB12   atagtgaataatttgagcaggtttgggttacaagagttaattttctggttattgtgcgacatgataggagaatgaaactcaccagaaatcaagagaggta  10689000                   <---------ATERF1(2)                   --------->ATERF1(2)          <---------SPL7                  <---------LBD16             --------->ANAC46                 --------->MYB52(1)           --------------->AtSPL8            <---------AHL20(1)               <---------LBD16            --------->ICU4              <---------ZAT2                        <---------MYB52(1)            --------->ARR11(3)          --------->ZAT2                       <---------RAP2.6(3)<----            --------->AHL20(1)          --------->HSFC1(2)                   *TSS               <----  --------->ARR14(2)                    --------->At4g35610                ---------->ID1       -----  <---------ARR14(2)--------->LBD16     <---------HSFB2a(1)            <---------ANAC58     --------- ----->ANAC58   <-----------GT1         <---------At4g35610            <---------ANAC58 ------------>CBF ----->ANAC58<---------ICU4             <---------HSFC1(2)        --------->ZAT6    <---------ANAC58 ---P       <---------ARR11(3)          --------->HSFB2a(1)     <-----------GT1     <---------ANAC58   agcaaatcggagaaaatattaccggcgaacaatatcgatgggagcttcgcggtactcttctctaatttacactgcttgccgttttgtcgtagcaatgttg  10689100                                                                                             <-------                                           --------->AHL20(2)                                --------                            --------->ANAC58                                                ---------                 --------->ALFIN1      --------->ICU4                        --------------->AGL15                 <---------REM1(1)   --------->AHL20(2)                      <---------------AGL15                 <-----------RAV1(1) --------->YAB1         --------->WOX13(1)        >>>>>>>>>GATA-1 --MYB46(1)    <------MYB46(1)     --------->AHL20(2)     ------------>CBF  ----------------->AGL3 --MYB83       <------MYB83 --------->ANAC58   --------->AHL20(2)           <-----------------AGL3 ------>GT1   --------->MYB111(1) --------->YAB1    ------------>CBF <-----------GT1----------->GT1-- >ICU4<-----------HVH21   ---------->DOF2  <---------AHL20(2) <---------ATHB12 --------->AHL20(2)  <-   gtaaaatgtgtcatagtaggtgttgcccaaaagccaaaataatatttaaataaaaacaatgtcaatgagttttacatctctataaatagataaatgatat  10689200               <-----------RAV1(1)    <---------bZIP60(2) ----------->HVH21        <-------TEIL --ARR11(3)<---------ANAC58                                                   ---------->DOF2 ->ARR11(3)<---------ANAC58                                            <---------ICU4 >YAB1     <---------ANAC46--------->YAB1                              --------->YAB1 ------->ANAC55(2)     --------->ICU4     ------>ZmHOX2a(1)           <---------ATHB12          ----- --------ANAC55(2)----------->GT1<-----------GT1                    <-----------GT1             <----   taagtgacatgtttcttgtgttgtaatattcatattttcagttcctattctgctattcattcgaaagttttaatcatcttcaaagtaattctatctagag  10689300                                                                         <---------WRKY38(1)                                                                         <---------WRKY45                                                                         <---------WRKY12                                                                        <<<<<<<<<<WRKY6                                                                        --------->WRKY18(1)                                                                        <<<<<<<<<<WRKY11                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <<<<<<<<<<WRKY43                                                                      <------MYB83                                                                      <------MYB46(1)                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <--                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)-----         --------->ATHB12      <---------YAB1              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <----        <---------YAB1     <---------AHL20(2)             <---------AHL20(2)          --------->AHL20(2) <----------DOF2         --------->AHL20(2)           --------->AHL20(2)<<<<<<<<<<WRKY26       ------ ---->At4g35610          <---------AHL20(2)    ----------->GT1  ---------->DOF2    <xxxxxxxxxxxxxxxxx -----At4g35610        --------->CCA1(2)<---------ZAT6<---------AHL20(2)<<<<<<<<<<WRKY38       <-----   ctgcttatttgttattggtttgtggatataaatttgatagtagtctaaattgtgaattatatatatgaaagttggtcaactctctccataaaatgacatg  10689400                                         --------->ANAC58                                         --------->ANAC58                                    <---------AHL20(2)                                   --------->AHL20(2)                                   <---------AHL20(2)           --------->YAB1                               <---------AHL20(2)            --------->WOX13(1)                  ----                               --------->AHL20(2)          <---------YAB1                   --------- ---------HVH21               <---------AHL20(2)          --------->TOE2(3)                --------->YAB1 -->MYC3                      <---------AHL20(1)         --------->YAB1                   --------->AHL20(2) ---MYC3                  <---------AHL20(2)           ------->TEIL                   --------->AHL20(2) --->O2                   --------->AHL20(2)     <---------AHL20(2)                <----------DOF2 xxxxxxsmallRNA(i2)      --------->AHL20(2)     <---------AHL20(2)           --------->ATHB12   ----- ----O2  <---------AHL20(2)   --------->AHL20(2)--------->AHL20(2)         <---------WOX13(1) -------   tgtcattcgattttttttaaactaaaaattaataaaattaaataagcaaattaaatgtatcatcaatcttactcttaattgatttctttaaaataaaaat  10689500                                                      <-----------GT1                        ---------->DOF2           --------->AHL20(2)            --------->ZAT14                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------ICU4                    <---------AHL20(2)            <---------YAB1            --------->ZAT6                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------YAB1      <-----------GT1        <-                    --------->AHL20(2)         <----------DOF2           --------->YAB1            --                    <---------AHL20(1)   <---------AHL20(2)              <---------ICU4           <--       --------->AHL20(2)                <---------AHL20(1)             --------->ICU4   --------->ICU4 ----->AHL20(2)     --------->AHL20(1)   --------->AHL20(1)        --------->YAB1        <---------YAB1 >AHL20(2)   ----------->GT1            --------->AHL20(2)      --------->YAB1  <---------ZAT14   --- ---->AHL20(2)--------->TOE2(3)      --------->YAB1  <---------YAB1<-----------GT1     --------->YAB1 -->YAB1    --------->AHL20(1)    <----------DOF2 <---------AHL20(2)  --------->YAB1   <---------ICU4   aaaaaacaaaaaaatatgttaataaattaagcactactttcattatattctttttattactattttttataacaataatcactactctataatgactaaa  10689600  Previous    Next  AGI:  At2g25100.1    Description:  ribonuclease HII family protein. Identical to Ribonuclease H2 subunit A [Arabidopsis Thaliana] (GB:Q9SEZ6;GB:Q8GYG9;GB:Q8LA95); similar to unnamed protein product [Vitis vinifera] (GB:CAO63929.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease HII/HIII; (InterPro:IPR001352); contains InterPro domain Ribonuclease HII; (InterPro:IPR004649) Range:  from: 10686603    to: 10689077    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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