Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->AHL20(2)                                                                     --------->AHL20(1)                                                                     <---------AHL20(1)                                                                     --------->AHL20(2)                                                                     <---------AHL20(2)                                                                  <--------ATHB1                                                                  <---------ICU4                                                                  -------->HAHB4                                                                  --------->YAB1                                                                  --------->ATHB51                                                                  <--------HAHB4                                                                 --------->ICU4                                                                 <---------ATHB51                                                                 --------->AHL20(2)                                                                 <---------YAB1                                                               --------->YAB1                                                               <---------ICU4                     <--                                                              --------->ICU4                    -----          ----------->GT1                                     <---------YAB1              <-------GAMYB        <---------ANAC46                                    --------->YAB1               ----------->GT1   --------->YAB1                        ----------->GT1   <---------AHL20(2)            --------->ALFIN1   <---------ICU4                <---------AHL20(2)     <---------AHL20(2)              xxxxxxxxxxxxx  --------->ICU4  <-----------GT1--------->AHL20(2)    <---------AHL20(2)<---------AHL20(2)     ----- ----bZIP60(2) --------->YAB1   --------->AHL20(2)     --------->AHL20(2)--------->YAB1xxxxxxxxxxxxxx   tggaataatgacatgtataatcactgttttttcatttaatttttagttaaaaacgaattaaataataataattaattaaaactaattaggggtgttaatt  10616100  <-----------GT1 -------YAB1 ------>GT1          --------->At4g35610                                                            < xxxxxxxx>smallRNA(le3)             ---------->DOF2                                                 - ---->YAB1--------->MYB52(1)   --------->YAB1             <---------KAN4(2)           <------ZmHOX2a(1) xxxxxxxx>smallRNA(i2)         --------->AHL20(2)       <------ZmHOX2a(1)           <---------TOE1(2)   gtaattacacaataactgaaaacatctgagtaataaaaaaaagatgtgttctactgtaggaataaacatacaaatgtgttctatcttaggaattagttca  10616200                                                                                                  <--                                                                                             --------                                                                                        <---------HSFB2a(2)                ---------->DOF2                                                         --------->HSFB2a(2)         <----------DOF2      <-----------GT1                                           --------->HSFC1(1) --------->AHL20(1)       ------>ZmHOX2a(1)                                            <---------LBD16 --------->AHL20(2)       <----------DOF2                       <---------At4g35610  --------->ARR14(2) <---------AHL20(2)   <---------RAP2.6(3)            <---------At4g35610             <---------ARR14(2) ---------AHL20(2)   --------->RAP2.6(2)             --------->At4g35610            <---------GLK1(1) -------->AHL20(2)   --------->DEAR3(1)           <---------At4g35610             <---------ICU4<----   aattaaattgtcttttcccaaagccgtcctttaaacccgacgaagttgtttaagcagcttaaattaagctccttgaaagattaagcatttctggaatttt  10616300                             <---------AHL20(2)                          --------->ARR11(3)                          <---------AHL20(1)                          <---------ARR11(3)                          --------->AHL20(1)     <---------ARR11(3)               ----------->RAV1(1)      --------->AHL20(2)<---------AHL20(2)       --------->GLK1(2)            <-----------GT1      <---------AHL20(2)--------->AHL20(1)      --------->RVE1(1)     <---------ZAT18    <----------DOF2     <---------AHL20(1)----------->GT1           --------->ANAC46        --------- ---------GT1        --------->AHL20(2) <---------ANAC46          <-----------GT1--------->At1g77200 ->ICU4              <---------AHL20(2) <---------ANAC58         --------->ZAT14 <---------ETT(1) -----YAB1           --------->AHL20(1) <---------ANAC58    ---------->DOF2<---------ICU4  ----------   tatcgactttaattagagaaaaataaaatattttttgatattccttgtaaaaatctgaagaataaagtttactccacttattaccgacacaaaaaaagtt  10616400                                                 ------>ZmHOX2a(1)                                             <---------ARR11(3)                                             --------->ARR14(2)                                             <---------ARR14(2)                           --------->LBD16                                  <---------AHL20(2)                                     --------->HSFB2a(2)                ----------->GT1   --------->AHL20(2)       --------->ARR11(3)            <---------HSFB2a(2)               --------->DAG2    --------->AHL20(2)        <---------ARR11(3)        <----------DOF2              ---------->DOF2    <---------AHL20(2)       <---------CCA1(2)     <------MYB46(1)         <---------AHL20(2)      <---------AHL20(1)  <---------MYB52(1)   <---------AHL20(2)         --------->AHL20(2)  <---------YAB1  --------->ARR11(3)          *TSS   <------MYB83*TSS >DAG2  --------->AHL20(2) --------->YAB1   --------->RVE1(1)           <----------DOF2  --------->HSFC1(1) >DOF2 <---------YAB1   ----------->GT1   --------->AHL20(2)         <---------ARR11(3)  <---------HSFC1(1)   gttccacttattaaaaaaaagttattcagttataatttttttaaaaaaatcctctgttatatatctctcactatcttttatttggttctttccagaaaca  10616500                                                               ----------->HVH21                                                               --------->DREB2C(2)                                          --------->At4g35610  --------->At1g77200                                          --------->ZAT2       --------->DEAR3(1)             -------                                          <---------At4g35610 --------->DEAR3(2)             --------                                    ---------->DOF2           <------NtERF2                 <--------                                  --------->LBD16            ------>NtERF2                 --------->ANAC58                                  --------->ZAT14            <---------ATERF1(1)           --------->ANAC58                                  <---------ZAT14          <---------ABI4(2)   <-----------ARR10                                --------->ANAC46          ------->GAMYB ---------->DOF2   --------->WOX13(1)                               <---------At5g28300       --------->ANAC46      <---------ARR14(2)                  ---------->DOF2--------->DEAR3(1)    --------->MYB52(1)      --------->ARR14(2)   <            ---------->DOF2   <-----------GT1 --------->ANAC58--------->ATERF1(1)   --------->ANAC46<         <----------DOF2   <---------GLK1(1)  --------->ANAC58--------->ORA47(2)<------ZmHOX2a(2)   <   attgatcagagctttaaagaaaaagatggaattcaccgcagagcagctaagccaatacaacggcaccgacgaatcaaagccgatctacgtcgcaatcaaa  10616600                          --------->ARR14(2)                          --------->GLK1(2)                          <---------ARR14(2)                          <---------ARR11(3)  <------NtERF2                          --------->ARR11(3)<---------DEAR3(1)                   <---------LBD16        --------->LBD16                  --------->MYB52(1)     <---------HSFB2a(2)                 --------->DEAR3(1)     <------NtERF2                          --------->ZAT2  <---------MYB52(1) --------->LBD16    <---------LBD16                        --------->At4g35610 --->DOF2     <-----------GT1          ------>NtERF2               <------NtERF2 ->YAB1     <-----------HVH21         --------->ARR14(2)          --------->LBD16 -ATHB12   --------->bZIP60(1)------>ZmHOX2a(1)   --------->ARR14(2)           <---------ZAT2  <----- ---------ANAC46 --------->AtMYB61    <---------ARR14(2)         --------->LBD16               ------ ---------ANAC58 <---------ALFIN1  --------->ANAC46             <---------LBD16<---------At4g35610 ---------ANAC58--------->MYB46(3)<---------LBD16 <---------ARR14(2) ---------->DOF2  <----------DOF2   ggccgtgtgttcgatgtcaccaccggaaaatccttctacggctccggaggcgattactcgatgttcgccggaaaagacgcgagcagagctttgggtaaga  10616700                                                                      <---------WOX13(1)                                                                    --------->ATHB12                                                                    <---------ICU4                                                                    <--------ATHB1                                                                    -------->HAHB4                                                                   <---------YAB1                                                     --------->ARR11(3)                                                     <---------ARR11(3)                             -                                    <---------ARR11(3)             <---------ATHB12      <---------At4g35610                                    --------->ARR11(3)<------ZmHOX2a(2)          ------>MYB46(1)<---- ----At4g35610           ------>ZmHOX2a(1)     ---------->DOF2     --------->ICU4------>MYB83   ----- --->At4g35610           ====================================HOX2a_HOX2a       <---------MYB59  -----   tgagtaagaacgaagaagatgtgtctccttctcttgaaggtctcactgagaaagagatcaatactcttaatgattgggagaccaaatttgaagctaagta  10616800             --------->REM1(2)                                                       <---------ANAC58            --------->ALFIN1                                                         <---------ANAC58          <---------ANAC46                                                  <----------DOF2          <---------ANAC58                                                 ------>ZmHOX2a(2)          <---------ANAC58                                                <------ZmHOX2a(2)      --------->WRKY38(1)                                                --------->ARR14(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <---------ARR11(3)      --------->WRKY12                                          <---------ANAC46     <---------ANAC46     <---------MYB52(1)                                 ------->TEIL     --------->GLK1(2)    <-------GAMYB                                       <-----------GT1  --------->ARR14(2)   <---------MYB46(3)                                ----------->GT1     <---------ARR14(2)   <---------ANAC46                       <---------ZAT14       <---------ANAC58   <---------ANAC46 <-----------HVH21                        <---------ZAT18       <---------ANAC58<-----------RAV1(1) < ----->ZmHOX2a(1)                --------->At4g35610 --------->ANAC55(2) <---------ARR14(3)         < -----ARR14(2)                   <---------At4g35610 <---------ANAC55(2) <-----------ARR10          < ---->ARR14(2)         <---------TOE1(2)  --------->ZAT18 <---------YAB1 --------->ARR11(3)         < ---->ARR11(3)       <---------MYB52(1)   --------->ZAT14 --------->ICU4<------ZmHOX2a(1)     <------   tcctgtcgttggccgtgttgtctcttaggtctctcttctgagattgcactatgttatgtaactattgtgtgtgaggatctttgtgttgtgtgttttctga  10616900                                                                        <---------ANAC46                                                                        <---------ANAC58            ----------->HVH21                                           <---------ANAC55(1)           ------>ZmHOX2a(2)                                            <---------ANAC58          <---------At4g35610                                        --------->GLK1(1)         <---------AGP1                                              <---------GLK1(1)         --------->ARR14(2)                 ------>MYB83            <---------ARR14(2) ---------ANAC55(1)                       <---------MYB59        --------->LBD16 ---------ANAC46                <---------YAB1                  <---------LBD16                    -- ---------ANAC58     <---------YAB1 <---------ICU4             <---------LBD16                ------- ---------ANAC58------>ZmHOX2a(2)--------->YAB1           --------->AHL20(2)                 <------- ---YAB1 <---------ARR14(2)   --------->YAB1------>MYB46(1)<---------AHL20(2)       <---------ZAT18<-   tttcgtgtttggatctgatcgttttgatacaattaccataagtaccaaattatctatgaaataaatcggggatttcgtgttctcagtggtcttcatattc  10617000  Previous    Next  AGI:  At2g24940.1    Description:  ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2); heme binding / transition metal ion binding. Identical to Putative steroid-binding protein 3 (MP3) [Arabidopsis Thaliana] (GB:Q9SK39); similar to MSBP1 (MEMBRANE STEROID BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G52240.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83013.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) Range:  from: 10616473    to: 10619311    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g24945.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36925.1) Range:  from: 10616492    to: 10619311    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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