Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       ------>MYB46(1)     ------>MYB83   <---------MYB59 ------>MYB83 ------>MYB46(1) -------->ORA47(1) ------->MYB46(3)                                    --------->GLK1(2) ------>DEAR3(2)                                     --------->ARR14(2) ----->MYB52(1)                                      ------->TEIL ---->P                                              <---------ARR14(2) -------GT1                                     --------->ALFIN1 ---ANAC58 <---------ICU4                       ----------->GT1 ---ANAC55(2)                                --------->DAG2                                         - ---ANAC58 --------->YAB1                --------->YAB1                                      <------- -->ANAC55(2)   <---------YAB1          <---------ZAT6  ----------->GT1            --------->ETT(1) < ---GT1 --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------MYB52(1) -----   accgaccaaataatcagtatcactggtgtcttcagtaatgtagtcataaggtgtgaatctgttaaataatacagtttcccttgggtcggaatgagttacc  10604000                                    <-------GAMYB                                   <---------MYB46(3)                                 <---------ANAC46                                 <-------GAMYB                                 <---------ANAC58                                 <---------ANAC58                            <-----------RAV1(1)                 --------->WOX13(1)--------->MYB111(2)                               <---------ANAC58       <-------TEIL   <---------ANAC55(2)                                            <---------ANAC58 -------->At4g35610 --------->YAB1<--------P                                   <---------YAB1 ----GT1--------->YAB1--------->ANAC55(2)                               ---------->DOF2        <----- ---------At4g35610<---------ATHB12--------->MYB55(2)                 --------->AtMYB61      <------- ---->TOE2(3)------->TEIL------->TEIL                              --------->ZAT6 --------->GLK1(1)   tcagttgcattcatgaactcaatcatgtatttgtgggttgttgttcggacaaaaccccagttttcgataacaccaaaagttctgatttctttccactgat  10604100                    <---------ANAC46                   <---------TOE2(3)            <---------ANAC58               --------->YAB1      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------YAB1            --------->YAB1     --------->ANAC58                  <---------YAB1       <---------GLK1(1)     --------->ANAC58                 ----------------->AGL3--------->GLK1(1) ----GLK1(2)<---------ANAC58       <---------GLK1(1)       <---------ARR14(2)           ----------->GT1 --ATHB12   <---------ANAC46       --------->GLK1(1)       --------->ARR14(2)      <---------MYB46(3)   tctcttcaagcatgtcgtagtaacgttgagaaaaccgagttccgattatagcttcaatttggataccctatgaaaacaaaattggagggtgagttatata  10604200                                                            <---------ATHB12                                                          ------>MYB46(1)                                                          ------>MYB83                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                ----------->GT1 <---------CCA1(2)       --------->MYB46(3)     <---------MYB52(1)           --------->YAB1   <---------ANAC46  --------->ARR14(2)               --------->LBD16         --------->ANAC58   <---------ANAC58  <---------ARR11(3)             <xxxxxxxxxxxxxxxxsmallRNA(s)         --------->ANAC58   <---------ANAC58  <---------ARR14(2)           <xxxxxxxxxxxxxxxxsmallRNA(s)    <----------ID1   <---------ANAC55(2)      --------->ARR11(3)    ---------->DOF2   gggaataagacaagcagaaggttaagtatgccttgtatcacgagtgaagatcccattacccactcatctacaaagacgacccgtagttcgaatgagttat  10604300                                                                         <------NtERF2                            --------->TOE2(3)             --------->ANAC58      <------NtERF2                            --------->TOE1(3)           <---------AtLEC2 --------->ATERF1(1)                     ------>ZmHOX2a(1)                <---------YAB1    --------->LBD16            <---------ANAC55(2)                  --------->ANAC58      <---------ANAC46            --------->ANAC55(2)              --------->ANAC58          <------NtERF2           --------------->AtSPL3            --------->ANAC58         <---------LBD16           --------------->AtSPL8--------->ZAT6  --------->ANAC58 --------->ANAC46            *TSS --------->YAB1------->TEIL --------->YAB1 --------->SPL7 --------->ANAC58     <---------RAP2.6(3)---   ctgtgataaacaagacgtacttcctaagaaccataacacaaatcgtccagcaagttatgcaaggattcaagtcgcggaggccgtcgtaacccatgctgaa  10604400                                                                                            <--------                                                                                            <--------                                                                                            <--------                               <---------MYB52(1)               <---------ANAC46         XXXXXXXXXXXX                         --------->AHL20(1)                  <-----------RAV1(1)     <---------YAB1                         <---------AHL20(1)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <---------TOE2(3)            xxxxxxxxxxxxxxxx>smallRNA(s)         <-----------TBP                 ---------->DOF2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------RAP2.6(3)                <---------AHL20(2)       <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------MYB46(3) --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------MYB52(1) ------>GLK1(2) --------->AHL20(2)<---------At4g35610 <-----------GT1        --------->GLK1(2)     <-   attctgagtcgttgaaaattaaagaaatattttgttagcttctgtttgtgcgagtttagccttctggtgtttatgggagaagccgtttttataggcgtat  10604500                              <-----------ARR10                              <---------ARR14(2)                              --------->ARR14(2)                            ----------->GT1                            --------->LBD16                          <---------LBD16                        <-----------GT1                     --------->CCA1(2)         <--------P                    --------->ARR14(2)         <---------MYB52(1)                                 xxx                    <---------ARR14(2)        <-------GAMYB                                      ---- --------->MYB46(3) <-----------ARR10   ------->TEIL                                           ------ -ANAC58          --------->LBD16       --------->SPL7                                         <----- -ANAC46          <------NtERF2      ------->GAMYB                                    <-----------GT1 -ANAC58          ----------->GT1  <---------At5g28300                           <---------AHL20(2) XXXXXXXXX>MIR402<---------ANAC46 <-----------GT1    ----------->GT1             --------->AHL20(2)<- ----------GT1  <---------LBD16--------->CCA1(2) --------->MYB52(2)             --------->AHL20(2)<--   taaaccgctggtaattgggccggatataaccggatataaccgtacctcggttagtcagtaaatcgtattgaacttcatgtcatttaattcacaactcagc  10604600                                                         --------->ANAC46                                                         <---------ANAC55(2)                                                         --------->ANAC55(2)                                                         --------->ANAC55(1)                                                         --------->ANAC58                    --------                                                     --------->SPL7                          <-------                                                   --------->At5g28300         <---------ANAC58                           <------ZmHOX2a(1)       <---------RAP2.6(3)         <---------ANAC46                    ----------->HVH21             --------->RAP2.6(2)          <---------ANAC58<-----                   <---------RAP2.6(3)            --------->ANAC46 <---------ANAC58          --------             <---------ATHB12                   --------->At4g35610<---------ANAC46          <-------           --------->WOX13(1)                   <---------At4g35610<---------ANAC58      <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ------>MYB46(1)--------->ANAC58    >>>>>>>>>WRKY18<-------- ----->RAP2.6(2)   --------->At5g28300    ------>MYB83<xxxxxxxxxxxxxxxxsmallRNA(i)      --------->AHL20(2) --->At4g35610    --------->RAP2.6(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ANAC58  --------- ----At4g35610  --------->At4g35610     <---------MYB46(2)     <---------DAG2<---------WRKY18(1) --------MYB52(1) ----------->GT1       <---------MYB111(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------RAP2.6(3) --------->ANAC46   <-----------GT1----------->HVH21     <---------ANAC58--------->YAB1   cgtaatgtcatttcaatcagccgtaacaaggacgatttatcaccaaactcagccgtaacacgcaacctttcgtattccttgacttgtatttttaataatt  10604700                                                                 ------>NtERF2                                                                 <---------RAP2.6(3)                                                                --------->RAP2.6(2)                --                                                                --------->DEAR3(1)                 --                                                        <---------AHL20(2)                        ---                        <---------ANAC58               <---------AHL20(2)                  <---------ARR11(3)                        --------->ANAC55(2)            --------->AHL20(2)                  --------->ARR11(3)                        <---------ANAC55(1)            <---------AHL20(1)                  --------->AHL20(1)                        <---------ANAC58               --------->AHL20(1)                  <---------AHL20(1)                        <---------ANAC55(2)            --------->ARR11(3)            ----------->GT1                       <-------TEIL            <---------RAP2.6(3)            --------->LBD16     ---                      <-----------GT1          --------->At5g28300<------NtERF2<---------------AtSPL3 ->YAB1            <---------ICU4           --------->At4g35610 --------->ANAC46    <---------ANAC55(2) -ATHB1         --------->YAB1              <---------At4g35610 --------->ATERF1(2) --------->ANAC58> ----YAB1      <---------YAB1           XXXXXXXXXXXXXXXXXXXX>MIR170        <---------At4g35610    --- >HAHB4    <---------ANAC46  <---------ANAC58 --------->ANAC46  <---------ATERF1(2) --------->ANAC58> --ICU4    --------->RAP2.6(2)   <---------ANAC46      <---------ARR11(3)  --------->At4g35610<------ -ATHB51 <---------At4g35610 <---------ANAC46 ----------->GT1  <---------RAP2.6(2) <---------LBD16<<< >ICU4   --------->At4g35610 <---------ANAC58 --------->RAP2.6(2)--------->LBD16 <---------SPL7  <---   cttgacaactcagccgtataatagttacatgtcttgggtataactcagccgtaacaatatattttgccgccaaactcagccgtagtacggaaatattttc  10604800           --------->ARR14(2)           <---------ARR14(2)        <---------ANAC55(2)        --------->ANAC58        --------->ANAC58                       <---------YAB1        --------->ANAC55(1)                  <--------ATHB1        --------->ANAC46                     -------->HAHB4        --------->ANAC55(2)                  <---------ICU4       <---------LBD16                       --------->YAB1     <xxxxxxxxxxxxxxxxsmallRNA(i)         --------->YAB1 ------->LBD16                           <---------AHL20(2) ---->NtERF2                            --------->AHL20(2)                  <---------AtLEC2       -- ------>ANAC58                       ------>ZmHOX2a(1)                     <-------TEIL            <- ------>ANAC46                       <----------DOF2                   <---------ICU4           <---- >>>>>>>>E2Fc                     ---------->ID1                    --------->YAB1              ----- ------>ANAC58                --------->At4g35610                  <---------YAB1           XXXXXXXXX >>>>>>>>E2Fd                 ----------->RAV1(2)              --------->RAP2.6(2)   <---------ANAC46 -----GT1  <---------GLK1(2)  <---------At4g35610              <---------ANAC46  <---------ANAC58 --- <<<<<<<E2Fa                <---------ALFIN1<---------ATHB51 <---------At4g35610 <---------ANAC58 --- ------LBD16              <-----------HVH21 --------->ICU4   --------->At4g35610 <---------ANAC46 ---   ccgccaaaacacggaacctctcgcattccttcacctgtcctttttaataattcttgacaactcagccgtataatagttacatggcttgggtataactcag  10604900  Previous    Next  AGI:  At2g24900.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07690.1); similar to Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE80110.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) Range:  from: 10603378    to: 10604394    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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