Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------LBD16             --------->LBD16             ------>NtERF2           --------->MYB46(3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           ------>ZmHOX2a(2)         <---------SPL7       <---------SPL7                -------->HAHB4           --------->ATERF1(1)       --------->LBD16      --------->LBD16               <---------ICU4          <------ZmHOX2a(2)         --------->RAP2.6(2)  --------->RAP2.6(2)            <---------AHL20(2)          <---------ATERF1(1)       --------->DEAR3(1)   --------->DEAR3(1)            --------->ICU4         <---------GLK1(2)         <---------LBD16      <---------LBD16                <---------YAB1         --------->ARR14(2)     ------>ZmHOX2a(2)      --------->LBD16             <---------MYB111(1)         <---------ARR14(2)    --------->CCA1(2)     ------>ZmHOX2a(2)             <---------MYB46(2)       --------->LBD16         <------ZmHOX2a(2)    --------->ARR14(1)            --------->ANAC58     <---------LBD16          <---------ARR14(2)    <------ZmHOX2a(2)            ------->TEIL   --------->ARR14(2)         <---------ARR11(3)    --------->CCA1(2)           <---------ALFIN1   <---------ARR14(2)         --------->ARR14(2)   <---------ARR11(3)       <-----------HVH21  <---------CCA1(2)           --------->AGP1       <---------GLK1(2)      ------>ZmHOX2a(2) --------->LBD16             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <------ZmHOX2a(2) ---------ANAC55(2)         ----------->ARR10      --------->ARR14(2)   <---------ARR14(2) ---------ANAC55(1)     <---------ARR14(2)   --------->ARR14(2)         --------->ARR14(2) ---------ANAC58        --------->ARR14(2)   <---------ARR14(2)   <---------ARR14(2)   <---------ATHB12 -------->ANAC55(2)    <---------CCA1(2)    <---------CCA1(2)    <---------CCA1(2)--------->ANAC58  - ---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------>NtERF2<---------LBD16<---------MYB59 -- ---->ZmHOX2a(2)--------->LBD16--------->ARR14(1)  --------->AGP1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----ZmHOX2a(2) <---------SPL7<---------GLK1(2)    <---------ARR14(2) --------->LBD16------>MYB83  <- ------ARR14(2)--------->RAP2.6(2)------>NtERF2   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ATHB51 ----->ARR14(2)--------->DEAR3(1) --------->LBD16----------->ARR10--------->ARR14(2) ------>MYB46(1)<   atccgtatccggatccgccggactcgtatccagatccgccggactcgtatccagatccgccggactcgtatccggatccgtcgcacctaattattcggtt  10573600                 <---------LBD16                 ------>ZmHOX2a(2)               --------->ARR14(2)            <---------ANAC55(2)            --------->ANAC58            --------->ANAC55(1)            --------->ANAC55(2)                                                     <-----------GT1            --------->ANAC46                                                    <---------AHL20(2)            --------->ANAC58                <---------ARR14(2)                  --------->YAB1           <---------LBD16      --------->ANAC46                                -------->ATHB1         <------ZmHOX2a(2)     <---------LBD16                                  -------->HAHB4        <-----------HVH21    <---------ARR14(2)                                 <--------HAHB4     ------>ZmHOX2a(2)       --------->ARR14(2)                                 --------->ATHB51    <------ZmHOX2a(2)      <---------ARR14(2)                                   <---------ICU4   --------->ARR14(2)      --------->ARR14(2)                                  <---------ATHB51   <---------ARR14(2)<---------ARR14(2)     --------->ARR14(2)                 <---------YAB1 --------->LBD16<------ZmHOX2a(2)<---------LBD16                               --------->ICU4 -------->HSFB2a(2)  --------->ARR14(2)  <------------MYB.PH3(1)             >>>>>>>>>GT-2 --------------->AGL1<---------GLK1(2) --------->MYB52(1)                  --------->At5g28300 --------LBD16 <---------ARR14(2)--------->LBD16                          ----------->GT1   --------- ---------HSFB2a(2)--------->LBD16 --------->LBD16                      <---------LBD16     <--------   ttccggatcggatcacggatccggattcgaatacccgcggataacggattttagtcccaggcctacatagcatctacggtaattattaactattaagtaa  10573700                             ---------->DOF2                        ----------->RAV1(1)                        <---------RAP2.6(3)       <----------DOF2                                   -                        ------>NtERF2   <----------DOF2         --------->LBD16                    --                       <---------ETT(1)--------->HSFC1(2)      <---------ANAC55(2)                 <-  ----------->GT1 <---------ANAC58     <---------HSFC1(2)---------->DOF2    ------->TEIL         ---- >ANAC55(2)       <---------ANAC58     <---------HSFB2a(1)     <---------ANAC58              <------- -ANAC55(2)   --------->GLK1(1)        --------->HSFB2a(1)     <---------ANAC58    --------->AHL20(2)   ccatgggtaaattcgaatttccttgccgacaaaaagaaggaactttccattccttttgtgaaagtccgtgagaacatgaacccaagttaatacaccttca  10573800                                                                                                   --                                                                <-----------HVH21                ----                                                             --------->TGA1a                ------>ZmHOX2a(2)                                                             --------->ANAC55(2)           <---------GLK1(1)                                                             --------->O2                  --------->GLK1(1)                                                             <---------O2                  <------ZmHOX2a(2)                                                             <---------ANAC46             --------->ARR11(3)                                                             <---------ANAC55(1)          <---------ARR14(2)                                                             <---------ANAC58             <---------ARR14(3)                                                             <---------TGA1a              --------->ARR14(2)         <---------ALFIN1                                    <---------ANAC58             --------->ARR14(3)      --------->PCF2                                       --------->MYB52(1)             <---------- -------->ATHB12                                         <---------MYB52(2)               <---------AGP1 ------->ICU4                                         <-------TEIL                        --------->AGP1 --------YAB1              <---------ANAC46       <---------TOE2(3) --------->At4g35610   <---------ARR11(3) ----->ANAC55(2)  ------>ZmHOX2a(1)               ----------->ARR10 <---------At4g35610  <---------CCA1(2) ----HVH21 --------->O2    <---------ANAC55(2)<---------At4g35610   <---------CCA1(2) <---------LBD16   catgattagccccacttctcctaaatgtctcgtaaactccaactattcggctaagattcactaacgtgtcatctctctattcgctattcccagatctcca  10573900      <---------ZAT18      <---------ZAT14      --------->ZAT14                                                            <---------ICU4    ===================================MYC_MYB                                   <--------HAHB4    --------->TGA1a                                                              --------->ATHB51    --------->bZIP60(2)                                                         --------->ICU4    --------->O2               --------->ANAC46                                 <---------YAB1    --------->ANAC46           ------->GAMYB                                 *TSS--------->YAB1   ------>MYB46(1)        ------------>CBF                               <---------ATERF1(1)   ------>MYB83        --------->LBD16       --------->ZAT6              ------>NtERF2  <---------ALFIN1     ----------->GT1  <---------HSFB2a(2)             --------->RAP2.6(2) ------->PCF2        --------->SPL7     --------->TOE2(3)           --------->DAG2   <-----------GT1 ------->HVH21     <-----------HVH21    --------->HSFB2a(2)        ---------->DOF2 <---------YAB1 -ARR10            <---------SPL7 <---------ALFIN1    ------------>CBF  --------->DEAR3(1)   tgacccacttcactccctgcgcgtccggtacaatcgccacttccataacaccaagagtcaatacaaaaaaaaagccgactccattattatccctctctct  10574000                                                                               --------->At4g35610                                                                            <------NtERF2                                                                           ------>NtERF2                                                                           <---------ATERF1(1)                                             <-----------HVH21            <---------DEAR3(1)                                           <------NtERF2                  <---------ATERF1(2)       <                                         --------->DEAR3(1)               --------->ATERF1(2)  <-----                                         <---------DEAR3(1)               --------->ANAC46     ------                                        --------->ATERF1(1)          --------->ARR14(2)        ------                                        <------NtERF2<----------DOF2 <---------ARR14(2)       -------                                      <---------bZIP60(1)       --------->AtLEC2           <---------                                      --------->bZIP60(1)     <---------ANAC58 <---------At4g35610 --                    --------->CCA1(2) <---------ANAC58        <---------ANAC58 <------NtERF2  <------                   <---------ARR11(3) <---------ANAC58        <---------ANAC46--------->RAP2.6(2)----                   --------->ARR11(3) <---------ANAC46       <-------TEIL--------->RAP2.6(3)<--------   acaaaaaaaacagtagagagagatatagagagcatcaatggcgtcgtcgtcaagactttgcgattcgtgcaaatcgacggcagcaactctattctgccgc  10574100                                                                    --------->ANAC58                                                               --------->ANAC58      --------->LBD16                                          <---------bZIP60(1)      ------>NtERF2                                            --------->bZIP60(2)      <------NtERF2  ------>NtERF2                             --------->O2     --------->DEAR3(1)                                        --------->ANAC58    <------NtERF2    <---------ATERF1(1)                       <---------O2    --------->ATERF1(1)                                        --------->TGA1a   <---------RAP2.3(1)        ----------->GT1                  --------->bZIP60(1)   ------>NtERF2   <------NtERF2                               --------->TGA2(1)   <---------ATERF1(1)--------->ATERF1(1)         --------->MYB46(3)--------->ANAC58  --------->ANAC46 ------>NtERF2                --------->MYB52(1)  <---------MYB52(2)  --------->ANAC58 --------->ATERF1(1)        <---------MYB52(2) --------->TGA2(2)  --------->ANAC58 --------->RAP2.3(1)       --------->At4g35610<-----------HVH21  --------->DEAR3(1)----------->HVH21        --------->ZAT2    <---------TGA1a --------->ATERF1(1)--------->DEAR3(1)   --------->ANAC46      ====================================== --------->SPL7   <---------ATERF1(1)    <---------ALFIN1      --------->ANAC55(1) ---------ATERF1(1)--------->ORA47(2)<------ZmHOX2a(2)         --------->ANAC55(2) ----LBD16        --------->LBD16   --------->ARR14(2)         <---------ANAC55(2) --->LBD16        ------>NtERF2     --------->ARR11(3)         --------->ANAC46 >NtERF2 <---------CCA1(2)----------->HVH21  <---------At4g35610<-----------TGA1 -->DEAR3(1)      <---------RAP2.3(1)--------->CCA1(2)       <---------ALFIN1 --RAV1(1)      <---------At4g35610 <---------ARR14(2)     <-----------HVH21 ------->DEAR3(1)<---------DEAR3(1) --------->AGP1=======================MYC_MYB ---ANAC46      --------->At4g35610 <---------ARR11(3)  --------->ANAC58                           == ----->LBD16    <---------LBD16--------->At5g28300<------------MYB.PH3(2)                          -- -At4g35610    <-----------RAV1(1)----------->ARR10     --------->ANAC58                           ==   gcagacgccgcgtttctctgcggcgactgcgacggtaagatccacacagctaacaaactcgcatcacgtcacgaacgagtttggctatgtgaagtatgcg  10574200                   ------->PIF5                   ------->MYC2                   <-------PIF5                   ------->MYC3                   <-------MYC3                   <-------PIF4                   ------->PIF4                   <-------MYC2                   <-------MYC4                   ------->MYC4                  <---------ANAC46                   --------->ALFIN1                  <---------ANAC55(2)               ------->MYC2                  --------->ANAC55(2)               ------->MYC3                  <---------TGA1a                   ------->PIF5                  <---------ANAC58 --------->ZAT2   <-------PIF4                  --------->TGA1a  --------->At4g35610  <---------PCF2                  <---------ANAC58 <---------At4g35610--------->SPL7                  <---------bZIP60(2)               ------->PIF4               ----------->HVH21   <---------ZAT2   <-------MYC3              <-----------TGA1     ------>NtERF2    --------->TOE1(2)             --------->O2 --------->At4g35610      <---------ANAC58             --------->TGA1a      <---------DEAR3(1)------->MYC4                                  <--             --------->bZIP60(2)  --------->DEAR3(1)<-------MYC2                                  ---             --------->ANAC58    --------->ATERF1(1)<-------MYC4                                 ----             <---------O2 <---------ZAT2           <---------TGA1a                               ====             <---------TGA1a     --------->RAP2.3(1)<-------PIF5                                 <---             =====================bZIP_DOF         --------->O2                               <------NtERF2             --------->ANAC58<---------ATERF1(1)   <---------O2                              ------>NtERF2             --------->ANAC55(1) <------NtERF2     --------->TGA1a                          ---------             --------->ANAC55(2)------>NtERF2      <---------ANAC58                         ---------             <---------ANAC55(2)<---------RAP2.3(1)<---------bZIP60(2)                      ---------             --------->ANAC46<---------TGA2(2)  ----------->HVH21                           ---------           <---------ALFIN1 ----------->HVH21  <-----------HVH21                            ---------         <---------ALFIN1 <---------At4g35610  <-----------TGA1                             ---------        --------->At4g35610 ----------->TGA1  <---------ANAC58                              <--------        --------->ZAT2    --------->ZAT2 <---------MYB52(1)                                 ---------    ----------->RAV1(1)---------->DOF2 <---------ANAC46----------->HVH21                    ---------  --------->MYB46(3)   ======================================bZIP_DOF                       --------- --------->ANAC58 ================bZIP_DOF    <---------ANAC58  --------->GLK1(1)          --------->ERF1 --------->ANAC46 --------->O2 <---------bZIP60(2) --------->ANAC55(2)          <---------ZAT18 ----- --------->ANAC58------------>OsbHLH66------>NtERF2<---------ANAC55(2)    --------->At4g35610-------- =========bZIP_DOF<---------O2 <---------bZIP60(1) <---------ANAC46   --------->ANAC46     --------->RAP2.3(1) ======================bZIP_DOF<---------O2   --------->ANAC46  <---------GLK1(1)         <---------ATERF1(1) -------->DOF2<-----------HVH21--------->ANAC46<-----------------PIF3(1)  <---------At4g35610<------- ======================bZIP_DOF--------->bZIP60(1)------------>OsbHLH66   <---------ZAT2 --------->ANAC46   aacaagcaccagcacacgtcacgtgcaaagctgacgccgctgcgttatgcgtcacgtgcgaccgtgatatccactcagctaatccactctctcgccgcca  10574300                                                                                           <---------                                                                                           <---------                                                                                          <---------TGA2(1)                                                                                          --------->TGA2(1)                                                                                          <---------TGA1a                                                                                          ===========                                                                                          --------->O2                                                                                          <---------O2                                                                                          --------->TGA1a                                                                                          --------->bZIP60(1)                                                                                          <---------bZIP60(2)                                                                                          <---------bZIP60(1)    <---------SPL7                                                                        --------->ANAC55(2)   <---------ANAC58                                                                       ===========   <---------ANAC58                                                                       <---------ANAC55(2) -----PIF5                                                                                --------->ANAC58 ---->PIF5                                                                                <---------ANAC58 ----->TGA1a                                                                              --------->ANAC58 ============================bZIP_DOF                                                     <---------ANAC58 ------TGA1a                                                                              --------->bZIP60(2) >RAP2.3(2)                                                                              <-----------STF1 >RRTF1(2)                                                                               ----------->STF1 >ATERF1(2)                                                                             <---------TGA2(2) >RAP2.6(2)                                                                            ----------->TGA1 >RAP2.3(3)                                  --------->ARR14(2)      <---------ANAC46  ----------->HVH21 >RRTF1(3)                                   <---------ARR14(2)      <---------ANAC58 --------->At5g28300 -ATERF1(2)                            --------->ANAC58      --------->LBD16          <------NtERF2 >DREB2C(2)             --------->ANAC46<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->ATERF1(1) >DEAR3(1) <---------ATHB12            --------->ANAC58      <-----------HVH21        <-----------HVH21 >ANAC46  ------>MYB46(1)            <-------TEIL         ------>ZmHOX2a(1)         <---------DREB2C(2) ->NtERF2--------->WOX13(1)       <------MYB83         ------>ZmHOX2a(1)            <---------DEAR3(1) ->ABI4(1)------>MYB83  ----------->HVH21    --------->GLK1(2)<---------MYB52(1)    <---------ANAC46 --ATERF1(1)      <----------DOF2 <------MYB46(1)--------->At4g35610 <---------ANAC58<---------MYB46(3)   cgagcgcgtaccaatcactcctttctacgacgctgtaggtccagcaaaatccgcttcctcctccgtcaatttcgtagatgaagatggcggtgacgtcact  10574400               ---------->DOF2                                                      <------ZmHOX2a(1)            <---------At4g35610                                                  <------NtERF2      <---------ANAC46                                                         <---------DEAR3(1)      <---------ANAC58                                                      <---------O2      <---------ANAC58                                                      <---------TGA1a <---------ANAC46                                             --------->LBD16<-----------HVH21 <---------ANAC58                                    <---------YAB1         --------->O2 <---------ANAC58                                  ------>ZmHOX2a(2)        --------->TGA1a        <- --TGA1<----------DOF2                            <------ZmHOX2a(2)       <---------DOF5.7(2)    <--- --HVH21    --------->At4g35610                  --------->ARR11(3)       --------->MYB52(1)     ---- =================bZIP_DOF                       --------->ARR14(2)   <---------TOE2(3)         ----- =================bZIP_DOF                       <---------ARR14(2)   <---------TOE1(3)       <------   gcttcgtggcttttagctaaagaaggaatcgaaatcactaatttgttctccgatcttgattatccgaagattgaggtaacgtcggaggagaatagctccg  10574500  Previous    Next  AGI:  At2g24790.1    Description:  COL3 (CONSTANS-LIKE 3); protein binding / transcription factor/ zinc ion binding. Identical to Zinc finger protein CONSTANS-LIKE 3 (COL3) [Arabidopsis Thaliana] (GB:Q9SK53;GB:Q8LDY3); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT5G24930.1); similar to CONSTANS-like 1 protein [Raphanus sativus] (GB:AAC35496.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 10573977    to: 10575224    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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